| mature miRNA: AAGCTCAGGAGGGATAGCGCC species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|109890518|gb|DW519482.1|DW519482 GH_TMIRS_231_D02_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc AAGCTCAGGAGGGATAGCGCC EST sequence (targeted fragment marked with yellow): AGAGCAGAGGGAAATTAGCCTTGACGGTTTTAGGGCCAAGAGATTCAATGTTCTTGTTGCTACAGACGTTGCAGGGCGTGGGATTGATATTCCTGATGTGGCTAACGTCATTAACTATGATATGGCGAATAGTATTGAAATGTACACACATCATATTGGAAGAACAGAACGTGCAGGCAAAACTGGTGTGGCCACAACATTTTTGACTCTCCATGACACTGATGTCTTCTTTGACCTTAAGCGGATGCTTGTTCAAAGTGGCAGCCCTGTCCCTCCTGAGCTGGCAAAGCATGACGCTTCTAAGTTTAAACCAGGAACAATTCCTGATAGACCTCCTAGACGCAATGACACTGTTTTTGCTCATTGAGAGTTTTTATTGACGTGAAATTCAAGTCCCCAATTTGCTTAGATGTAGTATGGTATTGTAGTTGCCAATATATTGATCATTGCTGCTCACAAGTAATTGCACTGGCATTCCAATTGTAAAATTTGGACTTGGTATTTGTCAACTTTACTTTATAGTGCTGCAGCAGTACTTGGTAATAGGAAGATGTTGAACTTTTTGAAATATTG | |||||||||
gi|78323062|gb|DT543336.1|DT543336 EST1053976 GH_TMO Gossypium hirsutum cDNA, mRNA sequence AAGCTCAGGAGGGATAGCGCC EST sequence (targeted fragment marked with yellow): CTCAGATCCGGCATGATCTTCATGCCGTTCTAAAAGGTGGATCCACAGTTAAAGAGTATGTTTCAAAGATTAAAAATCTTTGTGTGCTGCTTGAGGCTTCGAGATCTGATGTTTCTGAGGCAGAGAAAGTGGAGGTTCTCCTCGGTGGTCTTCCTCCTGAGTTTGATTCAGTTTTCATGTTAGTCTCGATCTCGTCGGAGGCCTTGACGTTTCAAAAGCTAGTGGATGTTTTAATGGCGTTTGAGAATCGAAAAACGAGGGCCGTGCGTGATGTTCCTATGGTTTCGCATGTCGTCGAAACTCCTGCCGATTTTGAGTCGCGAGGTGTACGTGGTGAGAGATCGTCGGCTGGAGTTCGTGGTGGTCGTGGTTTTCGGACGAAAGTTCAGTGCCAGATCTGTAATCGTCTGGGACATGTTGTACAGCGGTGCTACTATAGATTTGACAAAGATTATGGTGGTTCTGATGCGGCTATTGTGGCCGGTGGTAGAGCCGTTCGTGCGCGTGGTTATCAGTCAATGCCACGTACTGAAGGTGGGCAGTGGGTATGGCAGAACCAACATACTGTACGTGATTATCCACAGCCCAATTGGGTTGGTCTGTCAGCTAGATTGACTGGTGCATATCATGCACCCCGTATGTCAGTGCCTCGTGCCTATGCGCCTAGGCCCTATGCTCGTCCTAGCAGGCCTGTTATGGGTCAAGAAGCCCAGTTTTATACTGCTGCTCCTAGGCAGAATGTGACAGGTCCCATGCTTGGCCCAATCGATCAGCAAAATAGGTTGACTCATGGTACTCAGTACGTGTCCCAACAGTCTCCTGGGTCACCTGTAGCGAATTTTGTGGGTGTTCCGACTGTTCCACCTGACGCTCCGTGGCGTACCAAACCACATGCTCGAGTTTTTGATGTTGATAATTCTCAGAATATTGGTTTGCCTCGTATTCCAGATTTTTGTG | |||||||||
gi|109885862|gb|DW514832.1|DW514832 GH_TMIRS_185_G12_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc AAGCTCAGGAGGGATAGCGCC EST sequence (targeted fragment marked with yellow): GGCCAAGAGATTCAATGTTCTTGTTGCTACAGATGTTGCAGGGCGTGGGATTGATATTCCTGATGTGGCTAACGTCATTAACTATGATATGGCGAATAGTATTGAAATGTACACACATCATATTGGAAGAACAGAACGTGCAGGCAAAACTGGTGTGGCCACAACATTTTTGACTCTCCATGACACTGATGTCTTCTTTGATCTTAAGCGGATGCTTGTTCAAAGTGGCAGCCCTGTCCCTCCTGAGCTG | |||||||||
gi|109891654|gb|DW520617.1|DW520617 GH_TMIRS_242_D01_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc AAGCTCAGGAGGGATAGCGCC EST sequence (targeted fragment marked with yellow): GGCAGAAGGAAATTAGCCTTGACGGTTTTAGGGCCAAGAGATTCAATGTTCTTGTTGCTACAGATGTTGCAGGGCGTGAGATTGATATTCCTGATGTGGCTAACGTCATTAACTATGATATGCCGAATAGTATTGAAATGTACACACATTGTATTAGAAGAACAGGACGTGCAGGCAAAACTGGTCTGGCCACAACATTTTTGACTCTCCATGACACTGATGTCTTCTTTGATCATAAGCAGATGCTTGTTCAAAGTGGCAGCCCTGTCCCTCCTGAGCTGGCAAAGCATGAAGCTTCTAAGTTTAAACCAGGAACAATTCCTGATAGACCTCCTAGGCGCAATGACACTGTTTTTGCTCACTGAGAGTTTTTATTGACATGTGAAAATTCAAGCCCCCAATTTGCTTAGCTGTAGTATGGTATTGTAGTTGCCAATATATTGATCATTGCTGCTCACAAGTAATTGCACTGGCATTCCAATTGTAAAATTTGAACTTGGTATTTGTCAACTTTACTTTAAAGTGCTGCAGCAGTACTTGGTAATAGGAAGATGTTGAACTTTTTGAAATATTCTT | |||||||||
gi|78345818|gb|DT566092.1|DT566092 EST1076732 GH_TMO Gossypium hirsutum cDNA, mRNA sequence AAGCTCAGGAGGGATAGCGCC EST sequence (targeted fragment marked with yellow): GGCGAGTTTAGGTGCATTGTTCAAGCTAACTACACTCGATTTAAGCAAGCAGAATCTTTCGGGTGAATTGCCATTTGAGCTTTCGGGTTTACCTAATCTACAAGTCATTGCGTTACAAGAGAATATTTTATCCGGCGATGTTCCCGAAGGGCTTAGTAGTTTGATGAGTTTGCGATACGTGAATCTAAGTTCAAATTTATTTTCCGGCCATATCCCGGAAACTTTCAGATTTCTGCATTCGTTAGCTGTGCTTTCATTGTCTAATAATCGCATAACCGGGATGATCCCTCCTGAGCTTGGGAACTGCACTGAGCTTGAAGTTCTTGAGCTTGGATCGAATTCTTTGACAGGTCATATTCCTGCCGATCTATCTGGCCTTTTGAGGCTTAATGTGCTCGATTTGGGTGGTAACAACTTAACCGGAGAAATCCCGGAGGAAATCTTCAAGTGCTCATCGTTGACCAGTTTGTTACTCAATGGTAATCGGCTTTCTGGGAGCATACCGGATTCATTGTCCGAGTTATCGAATCTTACAATGCTGGATCTTTCTTATAATAGCTTGAGTGGAAACATTCCGGCTAATCTCAGTCTTATACCCGGGTTGGTCTACTTCAATGTCTCGAGTAATGACCTAACCGGGGAAATTCCGGTTAGTCTCGGTTCTAGATTTAACAATCCATCAACGTTTGCGGGTAATCAAGACTTATGCGGAAAGCCATTGGATCGGAAATGCGAGGATGTAGCGGTGAAGAACAGAAGGAAAAGATTGATTCTTTTGATTGTAGCAGTATCTTGCGCTGCAAGTCTTGTGTCATTGTGTTGTTGCTTTTACGTTTTTAGTCTTTTGAGATGGCGGAAGAAGCTCAAGGAAGCTGCCGGGGAGA | |||||||||
gi|193218418|gb|EY197677.1|EY197677 BC_006_78 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA sequen AAGCTCAGGAGGGATAGCGCC EST sequence (targeted fragment marked with yellow): AAACGAGGAGCTCGCGCGCCTGGCAGGTCGACACTNAGTGGATCCAAAGAATTCGGCACGAGCTCGAGTTTTTTTTTTTTTTTTTTCAAACCCCCAATCCGCTCTCGCTCGCCGCTACTAACGGGGTCTCGGTTGATTTCCCTTCCTTTAGCTATTCAGATGTTTCAGTTCGCTAAGTTTTAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATCACAGACGGTATCTCCCCATGGCCTTTCGCCTCTGAAAGCGTCCTTCCTTCTCAATGCCCGCTCGTGCCGAATTCGGCACGAGGGATTATGAGCCGAAAATCGCCGATTTTGGGGTCGCAAAGGTTGCAGAAAAATCTCTCAAGGGATCTGAATGGAACTGTTTTGCAGGCACCCATGGTTATATCGCTCCTGAGCTTGCCTATACACTAAAAGTGACTGAGAAGAGCGATGTGTATAGTTTCGGAGTAGTGTTACTTGAACTAGTGACCAGAAGAGCAGCCATTGAGGAGGAGTATGGAGAAGGGAAAGATCTTGTGTACTGGGTTTTAACTCATTTCAATCATCATGAAAACGTCCTCAAGGTTCTTGACAGTAAAGTAGCCACAGGAACTGCCACCGTGCGAGATGACATGATTAAGGTCTTGAAGATCGGTATCCTCTGCACTGCCAAGCTTCCAAATTTGCGCCCCACCATGAGAGAAGTAGTCAGGATGCTTGTCAATGCTGAACCAGCCTGTTCTACGTCTCCAGATAGCCAATCTGACAAAAATTGGTAAGGGTTTTGTTTTATACTATGTTATTCGGACTCCTGTGGTTGTTGGATGCGACTACGTGTTCGACGTGTGTATAGTTAAATTTTTCTAAGCTTTTTTTTTTTCGTTTATTTGGAGGATTNTTAAAATCATATTCCAA | |||||||||
gi|109873684|gb|DW502659.1|DW502659 GH_TMIRS_068_D06_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc AAGCTCAGGAGGGATAGCGCC EST sequence (targeted fragment marked with yellow): ATCTTTCATGGCACTGTTTCCACTTCCTCCATAGCCATTTTCTACTGACCAGTCCAAAAAGTCTTAACCCTTCTTCATTGGCTTCCCGAGCCATAAGCTGCTATCAATGGCTCAACGACGCCCATTGCCACCCTTGATCATGGACCTGACCATCGCAGTTCGTCCACCAGGTCATCAACATCCTAGCTCAAGAAAAGTAGATTTCATGTTTTGAAGTAGATGGCAATATCTCTCCTGAGCTTATTCTTCTTATATCTTTTCTTCTATTCTCGAAATTCTTTGATGATTATTCGAGTTTTCTTGACCTTGCAAGTCCGTAAGCAAGGTAAAATTGTTCTTGACCACTTTAAGAATTTTCAAGAGACTCTGAGCATGAAATTTTCATCAAAAGTTCGAGAAAGTTCTTATCTATCTTCTATCCCTCCTGAGCTGTATCTTCTCTTGGTCTCATTTCTCTTTAACCTAGCTAGGGTTATCTTTTATCATCTGTTTCGGTTTTAACTTAAAGTATTTCTGAATGCAATTGGATTATCCGG | |||||||||
gi|109889196|gb|DW518164.1|DW518164 GH_TMIRS_218_D12_R Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc AAGCTCAGGAGGGATAGCGCC EST sequence (targeted fragment marked with yellow): ATTCAATAATATTATTATTATTATGAATCGGAATATCATGTCAACCCCCATTAGTTGGAGCATGGTAAAGGCTAGTAAAAGCAAAAGGAGACCTGCAGGCTGCACCTAAGCACATGCCATACTCTTCACTCTCATTCAATGTCCACTGCTACAATAAGACAAATTACATCCTTTCAATAATTTCATGCACATAATAGTGTTTATAACTTAATTTATAACAGCGACAGTGCCTCTCCATAACACCAAATACAAGCAGAAGCATCACTTCCGCATATGCATTAGAGGACCAAACTAATTATGTCCACAAATATAAGGCCCCTTATTTGTTTGTTTCTCCAATTTATACGACAAAGGGGAATTTTCTTCAACTGTTTCTCCCCCTTTCTAGTGGAATCGTGGAGCCTGCAAAACTTACCCAACACCTGTAATTGTATTTTCTTTAAAAATCCCAGAATTGGGAAAGAGAAAACCAACCAAAACCCTTTTGATTTCAACAATATATGTTAAAACACACACACACAAACGAGGAAATATTTATAAAAAATGGAGGAGAAAAATGCAGTAACGGTACGTACCCACAAGATTTTTGTGTGTTCCTTTTTCGGCTAACGGAGCGACAGCAAGCAAGAAGAACCGATGAAACTCAGGATGGATAGCGCTATATGAGGATCAAATAACATACATGCATGAAAGCTTGAAAGATGGATCATCCATGGCGCTATCCCTCCTGAGCTTAACAGATTCTTCCATACTGGAATTAAATAAAAAAGAGGAGAGAAAAAAAAACCCCAATGTTGGTG | |||||||||