| mature miRNA: CTGTTAAGCTCAGGAGGGATA species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164300136|gb|ES845461.1|ES845461 UFL_122_88 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence CTGTTAAGCTCAGGAGGGATA EST sequence (targeted fragment marked with yellow): AGTTATGGCATGCTGGGAAATTGAACAATCCTTACAGAGCTTAACAGGAGTTTCACCAGGGGAAGGTACGGGGGCAACAATGTCAGATGATGATGAAGACCAAGTCGGAGAGTGATGCAAACTTGTTTGATGCAAGTTTCGACGGTCCTGATTCAATGGGATTTGGCCCTCTCATTCCGACGGAGACTGAAAGGTCTTTGATGGAGCGTGTGAGACGGGAACTCAAACACGAACTCAAACAGGGTTACAAAGAGAAAATTGTTGACATAAGGGAGGAAATTTTACGTAAGAGAAGGGCAGGAAAGCTTCCAGGGGATACGACGTCGGTTTTAAAAGCTTGGTGGCAGGCACATTCCAAGTGGCCATATCCTACTTATTGCAGGTGAAAACTGAAATTAAAAAAAGAAACACACAATATGGCGATCGTCTCCGACGGGATAGCAAATCACCGACACGACTAAACCAAACATACTACATAGAAAGCCAAACATACTAATGTGGTGGCCATGCAATAGTTTTAGGGATTATATTATTGCAACTTTACTGGGGAGAAAGGAAAGGGTTAATTTGTATTGTTAGATTATGAATTTTGGTTACTTTTATCTGGGTCCCTGTGAATACCGGTAGTAAGTAGTGAGTGTACAGTGTAATAAAATGTGGCATAATTTATATTCCCTTTTAACAGTCATGGTAGATCATTGCCGCCATTTCTAATGTAAATCTTTGAATTTGCCCAAAATGGTAAACATATGAAAACACTCCTTTTTGGCATAAAAAAAAAAAAAAAA | |||||||||
gi|78343846|gb|DT564120.1|DT564120 EST1074760 GH_TMO Gossypium hirsutum cDNA, mRNA sequence CTGTTAAGCTCAGGAGGGATA EST sequence (targeted fragment marked with yellow): GAGGAAATGCGGCGGTGAATTGGCAAAATGCGAGGTGCAAGGCGGAGATATTAGCCCACCCTTTGTACGAGCAGCTACTGTCGGCCCACGTGTCGTGTCTTAGGATCGCCACGCCGGTGGACCAGCTCCCGAGGATCGACTCTCAGCTGGCTCAGTCGCAGCACGTGGTGGCCAAGTACTCCGCTCTCGGCGGCGCAGCCCAGGGCTTGGTTGCGGACGACAAAGAACTCGATCAGTTCATGACGCAATATGTTGTATTGCTATGTTCGTTTAAAGAACAATTGCAACAACATGTTCGGGTCCATGCAATGGAAGCAGTTATGGCATGCTGGGAAATTGAACAATCCTTACAGAGCTTAACAGGAGTTTCACCAGGGGAAGGTACGGGGGCAACAATGTCAGATGATGATGAAGACCAAGTGGAGAGTGATGCAAACTTGTTTGATGCAAGTTTCGACGGTCCTGATTCAATGGGATTTGGCCCTCTCATTCCGACGGAGACTGAAAGGTCTTTGATGGGAGCGTGTGAGACGGGAACTCAAACACGAACTCAAACAGGGTTACAAAGAGAAGATTGTTGACATAAGGGAGGAAATTTTACGTAAGAGAACG | |||||||||
gi|109889196|gb|DW518164.1|DW518164 GH_TMIRS_218_D12_R Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc CTGTTAAGCTCAGGAGGGATA EST sequence (targeted fragment marked with yellow): ATTCAATAATATTATTATTATTATGAATCGGAATATCATGTCAACCCCCATTAGTTGGAGCATGGTAAAGGCTAGTAAAAGCAAAAGGAGACCTGCAGGCTGCACCTAAGCACATGCCATACTCTTCACTCTCATTCAATGTCCACTGCTACAATAAGACAAATTACATCCTTTCAATAATTTCATGCACATAATAGTGTTTATAACTTAATTTATAACAGCGACAGTGCCTCTCCATAACACCAAATACAAGCAGAAGCATCACTTCCGCATATGCATTAGAGGACCAAACTAATTATGTCCACAAATATAAGGCCCCTTATTTGTTTGTTTCTCCAATTTATACGACAAAGGGGAATTTTCTTCAACTGTTTCTCCCCCTTTCTAGTGGAATCGTGGAGCCTGCAAAACTTACCCAACACCTGTAATTGTATTTTCTTTAAAAATCCCAGAATTGGGAAAGAGAAAACCAACCAAAACCCTTTTGATTTCAACAATATATGTTAAAACACACACACACAAACGAGGAAATATTTATAAAAAATGGAGGAGAAAAATGCAGTAACGGTACGTACCCACAAGATTTTTGTGTGTTCCTTTTTCGGCTAACGGAGCGACAGCAAGCAAGAAGAACCGATGAAACTCAGGATGGATAGCGCTATATGAGGATCAAATAACATACATGCATGAAAGCTTGAAAGATGGATCATCCATGGCGCTATCCCTCCTGAGCTTAACAGATTCTTCCATACTGGAATTAAATAAAAAAGAGGAGAGAAAAAAAAACCCCAATGTTGGTG | |||||||||
gi|164317838|gb|ES818319.1|ES818319 UFL_213_44 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence CTGTTAAGCTCAGGAGGGATA EST sequence (targeted fragment marked with yellow): GGCACGAGCCCTGATGAGATTGGGAACCTTTCTTCTTTGTCACAATTTCTTGCATATAGCAACAATATCAGTGGATCCTTGCCAAGCTCTCTTGGGAACCTCAAGAGACTAACAAGTTTCCGAGCAGGGCAGAACTTGTTGACTGGAGGTTTACCTTCAATTATAGGTTCATGTGAGAGCTTGGAGTATCTTGGTCTTGCTCAAAATGCACTGACCGGCGAGCTACCGAAAGAGATCGGAAAGCTTAAGAACTTGAAAGAATTAATCCTTTGGGAGAATCAACTCTCTGGGTTAATTCCTGTGGAGCTTAGCAATTGTACAAACTTGAGTATTCTTGCTTTGTATGACAACAAGTTTGTTGGAAGGGTGCCCAAAGAGCTTGGGAACCTTATAAATCTCACAAAGTTGTACCTGTACAGAAACCAATTGAATGGAACAATCCCAAAGGAGATTGGGAATCTTTCATTTGCAGAACAAATTGATTTTTCAGAGAATATGTTGAGTGGAGAAATACCAGTTGAGTTGAGTAAGATAAAAGGGTTGAGTTTGCTTTATCTTTTTGAGAACCAGCTTACAGGTGTTATCCCTGTTGAGCTTACCACCTTGAAGAATTTGACAAAGCTTGATCTCTCCATAAACTATCTCACTGGTCCCATTCCTATGGGATTTCAGTATTTGACAGAACTCATCATGTTTCAGCTGTTTGACAACAAACTCAGTGGGGGCATTCCTCAAAAACTTGGGGCCTATAGCCCACTTTGGGTGCTTGATTTATCAGACAATCAACTGATGGGAAGGATCCCTCGCCATCTTTGCAGGAATTCAAACCTCATCTTTCTCAACCTGGGGTTAAACAGCTTAGTGGGGGCATCCCATCGGGTATTACAAACTGCAAATCACTGGTTTCACTTCTTTTAGTTGGAAACAGTCTTACAGGAAGTCTTCAATCAAATCTTTGCAAATTGTGAAT | |||||||||
gi|193219498|gb|EY196850.1|EY196850 D03_P-32_027 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA seq CTGTTAAGCTCAGGAGGGATA EST sequence (targeted fragment marked with yellow): CCTCCTATAATATACCGTGACCTCAAGTCCTCTAAAGTTTTGTTGGATGATAACTTCAACCCTAAACTCTCCAACGTTGGGCTGGACAAGCTCGGGTCTTCGGCCGATAGCAAGATGCCGATGCAATCGAGGATGATGGATAACCATGGATACAATGCTCCAGAATATACGAAATCGGGTACCGCCACGTTAATGACCGATGTCTATAGTTTCGGAGTTATCCTTCTTGAGCTTATCAGTGGAAGAAAACCTATTGATCCTTCCATGCCTGAGGACCAGCAAGACTTAGTTGCTTGGGCGCAACCAATATTCAAAGAGCCAAAACATTTCTCACAAATGGCAGATCCATTACTCGAGAAACGATTCCCAGAAAGAGGATTAAATCAAGCAGTAGCAATAGCAGCCATGTGTGTCCAAGAAGAAGCTGCTGCTAGGCCATTAATCAGTGATTTAGCCTCCGTCTTAAGTTTCCTATCCATCGCCACCGAAGAAAACAATATTCCGGCCACTCTTCCCGCTTCCATTTCTTCCAAATTAAACTGCATCTCCACCAAGCTCAACTTCTTAGACGGTGCCGATGCCGCAGGGAAGACGAAGGCAGCCGACAGCAACGTCACACCTTCCATCGCCGAAGANGGATCTGAAGACGAAGATGATGGCGGGTCTTCCGCACGAAGCAGCAGTGNCGATAGANGGTTAACGCNACAAAAAAGTCGAAATGGAGATCGTACNCTTAGCCCAAAAA | |||||||||