| mature miRNA: GGCCGGGGGACGGACTGGGAA species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|109823451|gb|DW008309.1|DW008309 GH_FFF_01-01-04R_H05_InvR_25Mar04_033_R.x fiber-five days after anthesis Gossypium hirsutum GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): CGCCCGAGAGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGACTGTTCGTCGCCCGGGGAAGGCCCCCGAGGGAGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCCCGGGAGCAGCTCGAGC | |||||||||
gi|164337094|gb|ES811643.1|ES811643 UFL_221_89 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): GGCACGAGTCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCGGCCGAAGCCGGCCTTGGGTCCAAAAAGAGGGGCCGTGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCAATTTCGCCCGAGAGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGACTGTTCGTCGCCCGGGGAAGGCCCCCGAGGGAGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACTCGCTCTCGCCGCGTGAGCAGCTCGAGCAGTGCACCAGCATCCGACCGGTTCGGGACTGGTACCCCCGTGCCCAGCCCTCAGAGCCAATCCCTTCGGCA | |||||||||
gi|164346032|gb|ES822684.1|ES822684 UFL_364_95 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): GGCACGAGGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCGGCCGAAGCCGGCCTTGGGTCCAAAAAGAGGGGCCGTGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCAATTTCGCCCGAGAGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGACTGTTCGTCGCCCGGGGAAGGCCCCCGAGGGAGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGCGGGAGCAGCTCGAGCAGTGCGCCGGCAGCCGACGGGTTCGGGACTGGGACCCCCGTGCCCAGCCCTCAGAGCCCATCCTTTTCCCGAGGTTACGGATCCATTTTTGCCGACTTCCCTTGCCTACATTGGTCCCTTGACCAGAGGGTGTTCACCTTGAAACCTGATGGCGTTATGAATACAACCGGGCGCGGACGGCCCTCCGTTTCATTTCTCCGGGAAAAAAAGAAAAAAAAAATTGTTAATTTAAAAAAAAGAACTGAAAATTCCGACCCCTTTGTCGGTTCCAAAAATTTTAAAAAATTCAAAAGGAAAGGGAAAAAGAAAAAAAAATTGTTTTGGGGGGGTTTTCTTTTTTTTGGTTTCTTCCTTCCTTAAGGTTTTTTTGCGTTTTGGTGGGAAAAGAAAAAGTTTAATTTCCCTTTTTTTTTAATTTTTTGAGAAAAAAGGGAAACAGGGGGAAAAAATTTTGGGGGGAAAATTTCCCCCCCCCCTGGGAAAAATCAAAAAGAAAAAAAAAAAAACAAAACACAAAA | |||||||||
gi|24976694|gb|AJ513212.1|AJ513212 AJ513212 Gossypium hirsutum ovule first day the flower opens Gossypium hirsutum cDNA clone su GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): TCGAGTTAGAGTCGACTAGGGCCTAGCGGCGACATGTATTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGACTGTTCGTCGCCCGGGGAAGGCCCCCGAGGGAGCCGTTCCCAGTCCGTCCCCCGGCCGACACGCGGCGACCCGCTCTCGCCGCGGGAGCAGCTCGAGCAGTGTGCCGGCAGCCGACGGGTTCGGGACTGGGACCCCCGTGCCCAGCCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGATCCATTTTGCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGCGGACGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCGCACCGGACACCACGCGACGTGCGGTGCTCTTCCGGCCGCTGGAACCTAACTCCGGCTGAGCCGTATCCAGAGTGGGCAAGGCGTTAAACAGAAAAGATAACTCTTTCCGAGGGGCCCGGCGAAGTCTCGCGAGACCCCAAAGTTGCGGCAACGCCGCGATCGGGGCAGGGGATTTTCCGCAGCCTCATTAGAATGTGGTGTGGACGCGTGTTGACGGGTTCCGCGTCTCTGGTTGTAACCCTTTGATGTCGTCTTTGATCCTCCCCTTTGGCTAAGTCATTG | |||||||||
gi|73859310|gb|DT462049.1|DT462049 GH_CHX08A04.x GH_CHX Gossypium hirsutum cDNA clone GH_CHX08A04 5', mRNA sequence GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): GTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGACTGTTCGTCGCCCGGGGAAGGCCCCCGAGGGAGCCGTTCCCAGTCCGTTCCCCGGCCGGCACGCG | |||||||||