mature miRNA: TCATCATCATCATCATCTTCT species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|72277204|gb|DT051020.1|DT051020 COT_EG_H04 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' si TCATCATCATCATCATCTTCT EST sequence (targeted fragment marked with yellow): AAGAAAATCAACACGAATTCCTTTTTGAAATAGCGGAGTCTTATGGACAAAAGGACAGACGATTCACCAAACACAGTGGCACATACATGGAAAAGTAACACAATACCAAATGAAACAGACACCAAAGCAAACCTAGGTAGAAACGGATAATAATATGACCCTAGCAAACAGGGTCTTAACCAAATTCACATCTTTGATCTCTCTCTCTCTTTAAGCGACACTGTTTTTTAGTGCATAAGCAAGTAGGAGACCAATAAGGAGCTGACACGAAAGCACTCCTTTTTTATTTTATTTTATTATCCTAGTCACGGCTGCACCTGATCAGAGAGATATATGATGAGTGAAATGACTAAATTGCCAGGACAAGACCCGGCACGGATTTTCCAACCCTGTTGGAAAAGCTGCTCTCCCAGACGGAAGGGCAATGCACAGAGGTAATCTCACCCGTCGATGATGATGATGATGATGATGATGATGATGATGATGATGGATTGTAGTCGGACGATGGAGATTGGGTAGAGTTTCCAAGGCGAGTAACGGTGAGAGAAGT | |||||||||
gi|84168808|gb|DR457456.1|DR457456 CM055D11 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence TCATCATCATCATCATCTTCT EST sequence (targeted fragment marked with yellow): GGCGAACAGAGAAAAAGAAGGATTAAAAAATCAATGGAATCGAAGAAACTAACGGCGGAATCAGCCCCGGTATTCCAGGAAGGAATAAGCTTAATCCTCACTCGGTGGTCGGCTCTCACCGCCGCCGTTGAAAACGAGTGGGGCGGCCGTGATTCTCTCGGCAAAGCCAACGCCATCTGCACGGACGTCTTCGCATTCTTCACTGAAGCCAGAGCGGAGCCGCTTTATATAGATGATTTGGAAAATCTTTTAGAGGAAGGTTTGCTTAGTCTTAATACGTTAGTTGAAGATGGCAGCATTGAGGAGGTGGCTGAGAAATTAATGATTATGCATGAAGAGTGTTTGGAAGGTAACTATCAATCTGTTGAAAAACTGAGGACAACGAATCCTCCTCCAGTCGCTCATGTCCGACCGAGTAACGACGAAGATGAGGATGACGATGATGATGAAAATGATAGCATGAGTGCAGACATCGCGGCAAACATGATGGTGGATGTACCGAACTCTCAGTCAAGTTTGAATCCAGTTAGTATGCTTACAGAAGAGCCAAAGCAAAAACAGTCAGCTGAAGCTGAAGACGGATGGGTGGTAATTCATCCCGGGAAAACAAGGGTTGACGGAATAAACACAAATAAAAA | |||||||||
gi|109879819|gb|DW508789.1|DW508789 GH_TMIRS_127_H11_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc TCATCATCATCATCATCTTCT EST sequence (targeted fragment marked with yellow): AACTCAACCCTCCTCTATTCTCAACACATCTCTATTTCTATCGCACTTTTATTCCCCTATTCCTCTCTCCCTCTCTCATCCGTAACTCTAACCCTAGCCCTCTATCAGGATTCAAACATGAAAGGAGGTAAATCCAAGTCGGATGCCAAGAGCGCCAAGCTCTCCGTGAATAAGAAATCAACCACGAAAGCTGGAAAGAAATCGGGGAAGGCAGCTAAGGATCCAAACAAGCCAAAGAGGCCTGCTAGCGCCTTCTTCGTTTTCATGGAGGAGTTCCGCGAGCAATACAAGAAGGAGCACCCTAAAAACAAGTCCGTTGCTGCTGTTGGCAAAGCCGGTGGAGATAAATGGAAGAGCCTTTCTGAAGCTGAAAAGCGACCTTATGTTGATAAGGCCGAGAAACGAAAGGTCGAGTATGAAAAGAACATGAAAGCCTACAATAAGAGACAGGCTGAGGGTCCCCAAGAAGATGAGGAGGAATCTGAGAAGTCTGTATCTGAGGTGAATGATGAAGAAGAAGATGATGATGAAGGCAGTGGAGACGTGAGTTGCAATTAGTATCAGTTTTGTGTCACTGATCTTCTGGCTTAGTTTGGACCCTATTGATTCGGGTTTCTCTTTTTTTTTGTAAATGCAGGAAGATGATGAGTAGGAAAAATCCAGGGAGGATAGCATAATCAAACTAGGCTGTGATAGTGTTTGATCATCTTATGTTAATGCTTTTTAAATGCAAATTTCATTTAAGCAAAAATGTAACTCTGGATGCTGTTGGTTTCTTTTGACGTTTCGAAATTAATAGT | |||||||||
gi|164248490|gb|ES837965.1|ES837965 UFL_038_02 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCATCATCATCATCATCTTCT EST sequence (targeted fragment marked with yellow): GCCTAGTGAAACCACTGAGTCAGAGGAGCTGACTTTCTGGACGGCTTGTCCGTACTGTTACATTCTCTATGAATACCCGAAGTTGTACGAGGATTGCACACTGAGGTGTCAGGCTAAGAACTGCAGGAGAGCTTTTCATGCGGTTGTGATACCGTCGCCACCCGTGAATGGAAGGGATTCGCGTTTCAGCTGCTGGGGGTTTTTCCCATTAGGATTTTCGAGGGGCGATCAATTTCCCAGTTGGTCACCCATTTCGACCATGTATGCTTGCCCTAATAATAAGAATACTGGGAAAAATAGTACTGCCAAAAAGCCTGCTCCAAGAGTGTATTATGATGATGATGACGCATATGTAGATATTTCTGACTCGATTGGGACTTCAGAGGATGACGACGACGACGATGATGAGTGGCAGANTGAGAAGAAGATAAGGGCCAAAATGGTCAAGGGGAAGGATCTGTGGGGGAAACTGCTAGAAAACCCCAAATGAAAGAATGAAAAAGGCGGTAATGGAGCACCTAAGGTTAAGGGAGGGGAATTTAATGGGGCTTCCCCTGGCCAAAGGGGTGGGACTGCTAACCCAATAAAAAAGAATTGTTAAAAGGGGAGGAACCAAAGCGAAGGGGCCAAAAATTTTGGGAATTTGGTATTAAATGGGGGTTTTTAATTGAAGTTAAAAACCCCCCCCGAAAAAAAAGAGGGGGAATCCCCCCGGCTTGGGGGAGGAAAAAAATTGAAGGAAAGGGGTTTTTTGGAGGCTTTGGAAAGTTTTTAGGGCCTGGGCCTCACCTTCTCGCGGTGGGGGGAAAAAAAAAATAAGGAGCTCCTTTAAAAGAAAAAACACCCTTTTTTTTTTTT | |||||||||
gi|164364968|gb|ES820529.1|ES820529 UFL_459_82 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCATCATCATCATCATCTTCT EST sequence (targeted fragment marked with yellow): GGCACGAGCTTCTCTTCTCCTTCTCTTGCCTTTCCAGGTTCCAAACTCTCAGTCTTCCTCTAGCTCCTATCCTTTAACAGGAAATGGCAGTCACATTCAACGACTTGGGTTCTGCTGCCGGCTTGAAGAAGCTCGATGAGTATCTCCTCACTCGCAGTTACATCTCTGGGTACCAAGCTTCAAAGGATGATATCACCGTCTACACAGCTCTATCTGGGGCCCCATCGTCTAGCTATCTGAATGTTTCTCGATGGTACAAACACATCGATGCCCTTTTGAGGATCTTAGGTGTTTCTGAAGAAGGCTGTGGTGTGACTGTTGAGGGATTTGCTCCCGCTGAGGCTGTGGCCACTCCTCCAACTGCAGATTCAAAGGCTGCAGCTGCTGAGGATGACGAAGATGATGATGTAGACTTGTTTGGTGAAGAGACTGAGGAGGAAAAGAAGGCAGCTGAAGAACGTGCAGCTGCCGTTAGGGCCTCTTCCAAGAAGAAAGAATCCGGCAAGTCCTCGGTATTATTGGATATTAAGCCATGGGACGATGAGACAGACATGAAAAAGCTTGAAGAAGCAGTAAGAAGTGTTCATATGGAAGGACTACTTTGGGGAGCTTCTAAGCTTGTGCCTGTTGGTTACGGAATNCAGAANATGGCAATTATGATGACNATTGTGGATGATCTAGTGTCTGTTGATACTCTGATCGAGGAACATCTTACAGTGGACCTATTTATGAATACGTCCAGAGCCGTGATATGGTTGCATCTAACAA | |||||||||
gi|109859134|gb|DW488113.1|DW488113 GH_RMIRS_067_G10_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TCATCATCATCATCATCTTCT EST sequence (targeted fragment marked with yellow): GACTTTCTCTCCCTGTTGAGAGAAAAAGAAAATTTAAACGTGAACTTCGTTCACAGAATATTTTCTCGGAAAAGAAAATAGAAAACCATAATCTTTCTCTCCGTCCAAACACAGAAAATGTCTCATATAATGTTCCAAACCTCTCCACTTCCCAAAACCTTGTTATTAAAGCCGAGTCTGCCGCCCCCACCTGGTAAGCATAGGAAAAATCTGACTTTGAGACGTTCATCTTCCTCTTTAATCGACGGTGGGGAGTCCTCCGTCGCTTCTCTAGAGCGCTGTTTCTTGGCACCACCGGCGCCTGTGGAGTCCGCATCTTCAGGTTCGGGTGAGGTTGGACCTGTTATGAAAGGAGGGCAATACGGTGCGTTTGGTGCGGTTACCTTGGAGAAGGGGAAGCTTGATTTGTCTCAGAAGCAGTCTACTTCTAGCCCTGAGCTTGCAACTGGAGGAGGTGGTGGAGATATTGGAAAGAAAATTAGTCATGGAGGTGGAGATGGGGGTGATGATGATGGAGATGAAGGTTATGACTTTGCAAACGCTGACCTCTGGACGGTGGAGAGATACTCTTTGTGTTGCTTGCAGGTTACTTGCCTTTTGAAGAATCCAATATTATGAATCTCTATAAAAAGACTTCAACAGCAGAATTCACATGCCCCCTCTTGTCTCGTCCTCTGCCTGATGTAAGGC | |||||||||
gi|73865278|gb|DT468016.1|DT468016 GH_CHX21E11.f GH_CHX Gossypium hirsutum cDNA clone GH_CHX21E11 5', mRNA sequence TCATCATCATCATCATCTTCT EST sequence (targeted fragment marked with yellow): GCGGCCGCGTCGACGAAGAGAGAGAGGGGAGGGTGTGTGAGGGTTTTTTTTTTTGAGAGAGAAAAGGTGTAAAGAGATGGGGCAGATCGTGAAGAGGAAGAAGAAAGGGAGGCCATCGAAGGCGGATCTGGCTAAAAGGGGAAGCTCGCCGGCAGCAGCGACGGAATTGGAGCTGCGGCGGAGTCACCGGCGGAGAAATGTGAGGTATAACATCGATTATGATGATTACCTGGACGAAGACTTCGAGGAAGAAGACGAGGAAGAAGAGAGGAGGAGAGAGAAGAAGCTTAAGCTTATTCTTAAACTTAATCAAGGTCTAGAAGCTGAACCGCCTTCTCCTCCTGTTTCTTTACCGCCGAGCCGTGGCCGAGGTGTTGTTTCGTCGTCAGCCGCGCGTGGGAGGCGAACGGCGAAGGAGGAAGTGGAGGAGGAAGAAGAAGATGAAGATGAGGAAGAGGAAGAAGAGGAAAGTGAGAGAAGGAAGAGAAAGATTAAAAAGAGAAGAATCAACGTCAGTGATGGAGTTGATGATGAAGACGAAGAAGAAGAAGAAGACCGACAAGTTGATGATGATGAAGATGATGATGACGATGGCCGTGTTGATGTGGATGCCGAGATGAGAGGGAGAAAAGGGGAATCCAAAGGGCAGAACTCGGTTCCAGGGACGCCATCCGATCCTCCATCAGCGGTTCCATTACCTGATAAGAAGATATTGGAATTGATTCTTGATAAACTTCAGAAGAAAGACACGTATGGTGTATATGCGG | |||||||||
gi|109885627|gb|DW514597.1|DW514597 GH_TMIRS_183_G12_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc TCATCATCATCATCATCTTCT EST sequence (targeted fragment marked with yellow): AAGTCTCTTGTAAAAGAGTCTCCCATTGAGATCTAAGACAAAATAGCAGCACCGGTCTCAGGTGAGGGTTCTAGCAGGAACTCGGATACAGTTGATAATGCCATGCTGGGAGCTTGGCTTGAGCAAATGCAGCTTGATCAACTTGTGGCTCAGCAAAACTGAAACTGTTTTCGCTGAGCCCTCCTGAGGTAGAGACAACGAAAAAAAGGTTTTGGTAAATAACATCTGCATTTTTTCTTTGGATTTTCGGATTCTGTTGGTGATTTAGTGTTGAAGGTGAAGGCAAAGAGATTGAGGTCAATTTTCATTTATTATTATTATTATTACAACAAAAGAGTTGGAACAGGATGAGAATAATATCCATCATGTTTAAAGAAATTGACCAGTTTTTTTCTTTTCATTATAATTTTTCTTCCAATATTTCTAAATTAGATTTCCGTTGCTGCCGTCTCAAAATTTATGATACTTCGATGATGGTGGTGGTGATGATGATGATGATGATGTAACCTTCAACTGAAGTTGGTTGCTTAATTGCTATTCCAAATAGCTTCGGTTTTA | |||||||||
gi|109884970|gb|DW513940.1|DW513940 GH_TMIRS_177_E06_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc TCATCATCATCATCATCTTCT EST sequence (targeted fragment marked with yellow): TGCAGAGATGAGGCCGAGAATCAAAGGAAGGTTTTCGAAGCGTACGGACATAGAAGTCTAAGTGGATCGCAGTAACATGTATGGGTTTGGAGTTGTCCCGTCGTTTTGAACTTAACCTCTCCTCTCCAGTCTTCCCCAGCATGGTCTAGTAATATGTTCAATTTTGAACTTTTTAATTTTCATCGCTTTCTCTTTTGTCCTGAGGCTTTTTGGGGGAAAGGATTCTGGGTTTTAAAGGTGTTATTTTGCAGGTTCTGAAATTAATGTTTATGTTATGTATATAAGTAGGTGATGATGATGAAGAAGAAGGTGTTATAATCCCACCTAACAATGGAAACTTGACCACTGTTTTTGTACAAGTTTTTTTTTCCCTTTAATTTGTAATTAGCGGATCTTTTTCTTCAATTCCGCCTGCTTTCTATTTAGGGTTTCAAACAAGAACCAATATTTTATATATATTGTCAGTATTGT | |||||||||
gi|109869783|gb|DW498759.1|DW498759 GH_TMIRS_029_A10 Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence TCATCATCATCATCATCTTCT EST sequence (targeted fragment marked with yellow): CGGTGGTCGGCTCTCACCGCCGCCGTTGAAAACGAGTGGGGCGGCCGTGATTCTCTCGGCAAAGCCAACGCCATCTGCACCGACGTCTTCTCATCCTTCACTGAAGCCAGAGCGGAGCCGCTTTATATAGATGATTTGGAAAATCTTTTAGAGGAAGGTTTGCTTAGTCTTAATACGTTGGTTGAAGATGGCAGCATTGAGGAGGTGGCTGAGAAATTAATGATTATGCATGAAGAGTGTTTGGAAGGTAACTATCAATCTGTTGAAAAACTGAGGACAACGAATCCTCCTCCAGTCGCTCATGTCCGACCGAGTAACGGCGAAGATGAGGATGAGGATGATGATGAAGATGATAGCATGAGTGCAGACATCGCGGCAAACATGATGGTGGATGTACCAAACTCTCAGTCAAGTTTGAATCCAGTCAGTATGCTGACAGATGAGCCAAAGCAAAACCAGTCAGCTGAAGCTGAAGACGGTTGGGTTGTAGTCTCATCCCGGAAAAACAAAGGTAGAAGGAATTAAGTCGTAATTTTTGTTACCCCTGTTCCCTATTCCTGGTATATACATCTTTTCTCAAGACATTTTTGGTGCTCTAATTATTTCTGTTTGTAACTTTTTTTTAAAATCTTATATCGAAAGAAGGATACTGTACTGGAATGTTACTGGATTGAAATAGATATGATTTTCCTTGGATTTTGTTTT | |||||||||
gi|164302634|gb|ES824087.1|ES824087 UFL_403_64 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCATCATCATCATCATCTTCT EST sequence (targeted fragment marked with yellow): GGCACGAGCATCCTTCTATCTTTATTTTCTCGCCTGTGACGAGAAGCCGACGCTACCATGGTTCACGTCAGTTTCTACCGCAACTATGGGAAGACCTTTAAGAAGCCACGACGTCCGTATGAGAAGGAACGATTGGATGCTGAGTTGAGGCTTGTAGGAGAGTATGGGCTCCGATGTAAGAGGGAGCTGTGGAGGGTTCAGTATGCTTTGAGCCGCATCCGTAATGCTGCTAGGGACCTTCTCACTCTTGATGAGAAGAACCCTCGTCGTATTTTTGAAGGTGAAGCCCTTCTTCGTAGGATGAACAGATATGGACTTTTGGATGAGAGCCAGAACAAGCTCGATTATGTGTTGGCTTTGACTGTTGAAAACTTCCTTGAACGTCGTTTGCAAACGCTCGTGTTCAAGACTGGTATGGCCAAGTCAATTCACCATGCACGTGTGTTGATCAGGCAACGACACATAAGGGTCGGGAGACAGGTTGTGAACATCCCGTCCTTCATGGTGAGGGTCGACTCCCAAAAGCATATTGATTTCTCTCTTACTAGTCCGTTTGGAGGTGGCCGCCCCGGAAGAGTGAAGAGAAAGAACCAGAGAGCAGCTGCCAAGAAGGCTGCTGGTGGAGATGGTGATGAAGATGATGAAGAGTAAACCTTAGGCTACTATNCACCACCAGTAGGAACCCTTTAAAAGCCTTTGTTTGGAACATACAATATCCTCCATTGGTAGACATGGTTTTGAGTTTTGGTTCCAGAACTTTGTTGTAGTGGATCTTGATATATGTTTTTGCATTTACTATTGGTGGTTTTGGTCGGATTTGAAAGTTATTAAAGTGTGCTGGTTTTAAGATTAAAAAAAAAAAAAAA | |||||||||
gi|164255812|gb|ES837011.1|ES837011 UFL_027_37 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCATCATCATCATCATCTTCT EST sequence (targeted fragment marked with yellow): GGCACGAGGAGCAATGCCTCTTTGGAGATGGAAACCATTGAAATAACGGTAGAGGATGAAGCAGTGGATCATGTAGATGCAGAGCAGCCAATGGCAGAAGAAAGTTCAACACTTCAATCGTCTTTGTCATCAAAAGAAGAAGATAAATCATCAATTTCAGCAGGGGAAGAAGATGATGAAGAATATCCTTTGATGGAATCATTATATCCAGCAGAAGAAAACGAAGAATATCCATTGATGGAATCATTACATCCAGCAGAAGAAAACGAAGATGAAGAAGAATATTCACCACCAAGATCGTCATTTTCTGTGGAAGATAACCGAATTGATGATGATGAAGAAGAAGATGATGATGATGATGATGATGATGATGGAGAGTATTCAACAAAGGAATCATCATTTTCAACAGAAGAAGAGAAGGACTCATTGATGCAATCACCACTTTCAACAGAAGATAAGAATGGTGAAAATGTTGCAGGGATGGAAGAAGAAAGCTCGGAAAGGAGCATGGAGCTCTTCCCCCAGAACCTAACACGGAGGGTAATTTGCCCAGCAGAGATAATGAAGGGCCCTGGTCACCGGAATCCCAAGAAAAAGAAAATGAATGTTTAGCTTTTCTAAAAATCCCCAATGGAAAATCCCAAGAAGGGAACCCCAAAACAACCCAAAAAAAAAAAAAAATATACATTTTTTTGGGCTAAAAAACCAAATTTTTGAACGAAAAAAAAAAAAAAAATAGCCAACCTTGAAGGAAACTTTGGGCCGGGGGAGGGGGAATGTTTTTGAAAAAAAAAAACAATTTCCCCAACACACAAAAAAAAAAAA | |||||||||
gi|164365601|gb|EV486132.1|EV486132 094E05 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence TCATCATCATCATCATCTTCT EST sequence (targeted fragment marked with yellow): GGCAGACATCAAGGGGGAATCTTCTGATATTCCATCAGAAGAACCTGCTAAAGAGGAAGTAAAAGAAGTTGACGAGGATGATGAATGGGAATCCCTTCAGACACTTAGGAAAATAAAACCTAACAAGGAACTTAATGCAAAGTTGGGCAAGCCAGGCCAAACAGAGATAACACTCAAAGATGACCTCTCCGAAAGAGACCGTATGGACCTCTACAAAACATACTTGTTATATTGTCTGACAGGTGAAGTCACCAGGATTCCTTTTGGTGCTCAAATAACCACGAAGAAGGATGATTCAGAGTATGTTCTACTGAACCAGCTTGGTGGGATCCTTGGTTTGACGAGTGAGGAGACAGTAGAAGTCCATCGGAGTTTGGCGGAGCAGGCTTTTAGGCAACAAGCTGAGGTGATTTTAGCTGATGGACAGTTGACCAAGGCTAGGATGGAGCAGCTCAATGAGCTGCAGAAGAATGTTGGCT | |||||||||
gi|164333045|gb|EV497504.1|EV497504 sg118H07 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence TCATCATCATCATCATCTTCT EST sequence (targeted fragment marked with yellow): CTGAACTAAAGGAGGCATGGAAACTTGTTGATGCTCCAAAAAATGATAAATTCCAGTACACACATTTTGTGCATAAGATTAACAGCTTTGATACTGCTTTAAAGAAGCTATTGGCATCTGATTCTCGCCTACGTCCCGACAGATATGCACTAGAGCAGAGTGACCTCTCTAATGCAGGCTTTGAAAAGAGCAGAGAGGCAACTTTCTTCAAAGTAAGTATGAATGGCAGTTTATTTTTTTGCAACCCTTGGGGATTTTCTCCTTTTTTTCTTTTGCAAGTTTAAAGTGATGCTGATGAAGACGACAATGATGATGGTGATGATGACGGTGAATCAAACAATTCAAGTGGTTTTGACCTGGACTTAACACGAGATGCTATAGCTTCTAGTTTAATTAATTCATTTCACATTGTAAATGCTATTGTAACCTTTCCAGTATCTATATCTGGTATAATAAAATATTATCCCTTTTTAAAAAAAACAACAAAACAAAAA | |||||||||
gi|78352192|gb|DT572466.1|DT572466 EST1083106 GH_TMO Gossypium hirsutum cDNA, mRNA sequence TCATCATCATCATCATCTTCT |