| mature miRNA: TCCAAAGGGATCGCATTGATC species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164333677|gb|ES816864.1|ES816864 UFL_197_20 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): GGCACGAGCTGGTGCATAGATGTACTAACCTCAAGACTCTTCGGCTCAACCGTGCGGTGCCCCTGGATAAGATTGCCAACATTTTACGTCATGCACCGCAGCTGGTTGAATTCGGTACTGGTACCTACACGGCTGATGTACGGCCAGATGTCTACTCAGATTTGGCCGGGGTGCTTTCTAGTTGCAAGGAACTAAAGAGCTTGTCTGGATTTTGGGATGTGATCCCGGATTACCTTCCTGCCATTTACCCTGTCTGCTCTAAATTAACATCACTGAACCTGAGCTATGCTACTATACAAAGTCCTGATCTTATCAAGCTTGTAAGCCACTGTCCGAATTTGCAGCGCCTATTGGTACTTGATTACATTGAAGATAGTGGGCTTGAGGTGCTTGCATCTAGTTGCAAGGACTTGCAAGAATTACGCGTGTTTCCATCTGATCCATTTGGTGCAGAGCCAAATGTGTCCTTGACAGAACAGGGCCTTGTTGCCGTATCTTTGGGTTGTCCCAAGCTACAATCAGTATTGTACTTCTGCCGCCGAATGTCTAATGAGGCATTAGTTACCATTGCTCGTAGCCGTCCAAACTTCACAAGGTTTCGCCTTTGTATAATTGAGCCTAAAACAGCTGATTACCTGACTCTCGAGCCACTTGATGTTGGTTTTGGAGCCATTGTTCAGTACTGCAAGGATCTCAGGCGTCTTTCCCTCTCTGGTCTTCTTACAGATCGTGTATTCGAATATATTGGGACATACGCGAAGAAACTTGAGATGCTGTCTGTGGCTTTTGCAGGAGATAGTGATTTGGGACTACATCATGTGCTTTCCGGGTGTGAAAGCCTTCGGGAACTGGAGATCAAAGATTGCCCCTTTGGTGACNAGGCTCTTTTGGCCATTGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCGCTGTGAGCTTCGCAGCATGTAAGCTGCTAGGTCAGAGGATGCAAGGGTGGAATGTTGAAGTTATAGATGAGAGGGGACCTCCTGATTCAAGACAGAAAACTGCCCAGTTGATAAGCTCTACCTATATAAGGTCGATTGGCAGGGCCAAGGTTTCAAATGCCCCCCTTTGGTTTGGAAAAGGGATGAAAAATTCGGGATTTGGGGCGTTTCATGAAAAATTTTCCCTTGGAATTTCACTCCCAATTGGTTCCCCAAAAAATAAAAGGCTCCCGGGGGAACATTGTTTCTTTTGGGTCTTCACCATTTTTTTCCCCGGGGTTTCATATTTATTTTTCCCGCCACTAATAATAAAAGGGGGGCCCCAAAAAAGAAAAATGTGGGGGAGGG | |||||||||
gi|164313210|gb|ES842934.1|ES842934 UFL_093_45 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): GCAGCTTCTACCTCAATTCATTGCTCAAACTCGGAGCTGTCGTAGGTATAGCTCATAGTACCATTTCCTAACCTTTGCAACCATTGCATGTAGGCAAAATGCCTAAAAGGTTTTTAAATTTGTGATTAGGGTTTTGACGTCGCTTACTCTATATAGGAATGTACTGTGATAGCTTAACATGATAAGCGTATAGTAATTATATTCTTAGCCTCATTATTTTTTATCTTTTCTTTTATTTTTTTCTACTAATTCCAGCTTTAATCACAAGACTGGAGCAGAGGATGTACACTTCACCTCTGTATCCCCTAATCAAGAATATGAAGATGATGTTGACAGTGAAAATGGTGATAATAACGAACTAAGTAAAATTTCTGGCCATGATAAGAGAGATTCCACCTGTGAAAATTCGTACATTCATAGTGATTCGGAATCAGATTACTCATCAGTTACAGGAGAGGATCCTATGATGCTGCAAATGATTATGGTGAGAGAAGTAAAATCAGGTGATGAGGTTTTTAACACATACGGGTCACTTGGCAATGCTGCTTTACTTCATAGATATGGATTTACAGAGGCTCATAATCCTTTTGATATAGTGAACATCGATTTGGAATTGGTTCTCAAGTGGGGTTGTTCACTGTTCTCTAGTCGGTACTGCAGAGCAAGGTTATCCCTTTGGAGAAGAATAAATATCTCTGGAAGCGTAAGTGAGAACTCTGAATATTTTGAGGTCTCATCTAATGGGGAACCTGAATTGAAACTATTGACATTATTATACATAATGTTATTGGCCAAAAAAACATGTCATAAGTTGGATATAAACATTTGCACTGCAAACAAGGTTAATGCAAACTTGGGCATGATCTTAATCAAAAAAACTTGAAATTACCATGGAACAAAAACTCAAAAAATCACCAAGGGACTTTATTGTTAACAGAAAAAAGTTTGCCGTGGCCCCCTTTGGCACCTGGGAGAAATTCCTGAAAAATTTGTTATCGGTCCAAATTTAAATAAATTAAAAAAT | |||||||||
gi|164360788|gb|ES827656.1|ES827656 UFL_374_21 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): GGCACGAGCTGCCATAGAGCTTCACGGAAAAATCCAGTTTTGAACCCAGTTTTCCAAGCCTATTCCTAGTGCAGGTGGAGAGCTCCAAAGGGATCGCATTGATCTAATGTTGATGATGGGCTTCCTTGAAAACCTTAACGAATTAATTATTGATTTTTGTTGATTCAGTTCAGTACCCATTGGATCATGCGATCCCTTCGGAATTTTCCATCGCTAGCTCTAAATTTTTATCAACCCTTTTCCCTCCTGGTAAGCTAGCTCATCCTCGTGTTTCCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGAAAAATAAAAATAAAAATAAAAATGCATTTTTAGTTTTTTTTTTCTCTGTAATTTTAGTTTCTACGTGCTAGTGCTAGTGCTCTCAGCTATGGAGAAACTGGTTTTGATTGACAGCATGAAAGTTGATTTGAAAGGGTATTTTTCTTTTCAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|84174476|gb|DR463124.1|DR463124 CM115B02 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): GACAATGCTCTATTAGCGAACGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCTTCTTGCTCTGTGAGTCTCGGAGCATGTAAGATGCTAGGTCAAAAGATGCCCAGGTTGAATATCGAAGTTATGGACGAGAAGGGACCTCCAGATTCAAGAGCAGAAAGTGACCCGGTCGATAAGCTCTACATATATAGATCTGTTGCCGGGCCGAGGTTCGATATGCCTCCATTTGTTTGGACGATGGACGAAGATTTTGCATCAGAGCTCTCTTGAGAATTAGGCAACATGTTAGTAAAAACTCTTTTAATCTCAAGAATCAATGCATCAGGTACATGCTCCTTTATGTTACTCATTATTCCCTTAGCTTAATCTAATTGCAGACCTTATTGAAGGGTGTAAAATGGTTTTGAGCTCCATCGCCTTTCGTTTTAGTAGTGGCTGGCGGAGCCATCGGAAACACAATGATCAATAAAGAGATGGAAACTCCAGTTGTGGATTAATCAAAAAAAAAAAAAAAAA | |||||||||
gi|164319949|gb|ES829371.1|ES829371 UFL_265_68 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): GGCACGAGGTCTCAAGAGACTATCACTCTCTGGCCTTCTGACTGATCAGGTTTTTCTTTACATAGGAATGTATGCCGAGCAGCTCGAGATGCTGTCCATCGCTTTTGCTGCGGACAGTGACAAAGGAATGCTCTACGTGTTGAACGGTTGCAAGAAACTTCGCAAGCTAGAGATCAGGGACTGCCCCTTTGGTGACGCAGCACTTCTAGAGGACGTGGGAAAGTATGAAACAATGCGATCCCTTTGGATGTCCTCCTGTGAAGTTACCCTCGGAGGCTGCAAGTCAGTTGCTGAGAAGATGCCGAGCCTAAATGTGGAGATCATAGATGAGAGTGAACAAATGGAATTTAACCTTGACGACAAGCAGAAGGTAGACAAGATGTATCTGTATCGAACATTAGTCGGGCATAGGAAAGATGCACCAGAATATGTGTGGATTTTGTAGGTGCATTGGTTTGGCTCAGCCATTATTTATCTTTGCTTATTTAAGTAGTTGTACGTTGTTAGGAGAACCGATTTTAATGTATTATTAGCTTGTGGTGATCTAGCCTTTATGCTATTGTTGTTTAATGTACAAGAGATTTGCTATTTTGTAATCCTTGTTATTTATAAATGGATCTGTTTTAAGTAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|164334712|gb|ES797091.1|ES797091 UFL_476_79 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): GGCACGAGTCAGAACCGTCCAAACTTGACCCGGTTTCGTCTTTGTATAATTGAGCCAAATACAACTGATTACCTGACCGGAGAGCCATTTGATGTTGGTTTTGGAGCCATTGTTGAGCATTGCAAGGATCTCATACGGCTTTCCCTGTCCGGTCTCCTCACAGATTGCGTGTTTGAATATATTGGAAAATATGCAAAAAAGCTGGAAATGCTATCCGTGGCTTTTGCAGGAGATAGTGATTTGGGACTCCATCACGTGCTTTCAGGGTGTGAAAGCCTACGGAAACTAGAAATTAGGGACTGCCCCTTCGGAGACAAGGCTCTTTTGACCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCTTCCTGCTCCGTGAGTTTCGGAGCTTGTAAGCTGCTAAGTCAGAAGAAGCTGAGGCTGAATGTTGAAGTTATAGATGAGAGGGGACCTCCTGATTCAAGACCCGAAAACTGCACAGTTGATAAGCTCTATATCTACCGATCTGTGGCTGGGCCAAGGTTTGACATGCCTCCTTTTGTTTGGACGAAGGATGAAGATNTGGCTTTGAGGCTTTCTCCATAGATCTCATCTGAAGTAGTCAAACTATGGCGGCTCATTCGATCTNCAGAACAGATTATCAGGTACATCCTCCATATGTNTCTCAGTGTTGCCAGATNCATCTTTATGTAGATTAATATAGTTGCAAATCTGGTTNGGAGTGGGAAACATATATGGAGGATATACGANGATTGAGAATACGCACTGTAGNTAAAAT | |||||||||
gi|78343509|gb|DT563783.1|DT563783 EST1074423 GH_TMO Gossypium hirsutum cDNA, mRNA sequence TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): CACTCCCCCATCTCACTATCCCTCTCTCAGCGCGTTTCTCTTTCTCATGGACGAAGAAGATAGTAGACCACCATAACTCCCTAACCTTACCCACTTGACTCTTCGTTCCGCCATTTCTGCCCTAAAAAAGCTTTTTGTTTTTGTTCCTTCTTTCAACTTGAACTGCCCCTCCATAGACCGGAAATGCCGTTGAGATCCGCCCATGGACAGGGAGGCTAAGCTTCCGCTCCCACCACCTGCCAATCTGGTCCGCCCGATCCCTAATCAGGACACATCGTCTTCCACTTCGTCATCTTCCTCCCCTCCTGGCTTCATCCGTGATGTCCAAGCCGCCTTCAAGCGCCACCGCTCTCTCGGTACAATTCAGACGAATGGTATAATGCCAAGACGAATGGTGGTTCCCCAGCGCGCAGCTTCTAGAAATATGGGTGCCAATAATGATACTAACAAGTCTCAGGATTATGGTTCGTTGAGTCATGGTCAGTTAGTCAAGGACAAAATTAATGCTGGGGAGTCTCAAGAAGATGCATTCATTACTCCACCTTCCATCACGGGAACTACCACCAAAACCATTGATGAAAATTTCAACCCATTTGATGTGGATCGAGATCAACACAAGGAGGTTGATGCTAAAAAAGAGAATAATCCGATCCCTTTGCAGGATGTACAATCTCAAAATGCTGATGGTGAGAGAAAGGTTCAGTTTTTAACTGGACACATTGCTGTTTCCCAAGAAATGGAATGGAACACGGTCAATCAAGTAGAAACATCAACAGTTGTCAATAATGAGTCAAAGCACAGCCACATTCAGAAC | |||||||||
gi|3326602|gb|AI055488.1|AI055488 coau0004C04 Cotton Boll Abscission Zone cDNA Library Gossypium hirsutum cDNA clone coau0004C04 TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): CTTGGCATTTGCTTTTTCTAAATTCCAGCAATCTCTTTACTCTTTGCTTTCATTTTCCCTTAATTCAGTCACAAAAGCATCATCATTATTATCATTGTTTAACCACTCTCTTTCTTTTTCACTCAATTCTACTACTAAAATTCTGGGTTTTGTTTTCTGATTCTTGATTCTCAGTTTTCACTTTGATTATCGATCTGGGTTTGTGTTTTTTTTTTTGGTCATGGAAAAAGACAAAGCTTTTATGTCTGAAGAGCTGAAGAACAGAACAACAACACGACAACAACAACCAGCTTGGAACCCTTGTGGTTTTATGACAGAAATGTCAACAAATGAGCTGAATTGTGGAACAGAACAAGGTGGGAACTATTTTTTCAATCCAAATTGGGATAATTCAATGGATCAGAGCGATCCCTTTGAATCAGCATTAAGTTCCATGGTGTCTTCTCCAGCTGCTTCCAATGTTGGTTCCGGTGAAAATGTAATGATGCGGGAATTAATTGGAAAATATGGGATATATGCCAATCTAAAGATATCATCACCAACAGTACTAATGCTTCATGGTATAGTACGCCATTGAATTCACCTTCATTTTAACTGACCCTGGGATTTGCTGAAGAGCTGCTAGATTTTCTTGTNTGGTGGGCTAAATGATCCATTAGGGATTCCTN | |||||||||
gi|164314417|gb|EV499006.1|EV499006 sg154G04 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): CCTGACTCTCGAGCCACTTGATGTTGGTTTTGGAGCCATTGTTCAGTACTGCAAGGATCTCAGGCGTCTGTCCCTCTCTGGTCTTCTTACAGATCGTGTATTCGAATATATTGGGACATACGCGAAGAAACTTGAGATGCTGTCTGTGGCTTTTGCAGGAGATAGTGATTTGGGACTACATCATGTGCTTTCCGGGTGTGAAAGCCTTCGGAAACTGGAGATCAGAGATTGCCCCTTTGGTGACAAGGCTCTTTTGGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCTTCTTGCGCTGTGAGCTTCGCAGCATGTAAGCTGCTAGGTCAGAAGATGCCAATGTTGAATGTTGAAGTTATAGATGAGAGGGGACCTCCTGATTCAAGACCAGAGAACTGCCCAGTTGATAAGCTCTACATATATAGGTCCATTGCAGGGCCAAGGTTCCACATGCCTCCTTTTTGTTTGGACAATGGATGAAGATTCTGGATCGAGGCTTTCTTGAGACATTTCCTGGGATTCAGCTCGATTGATCCTCCCGACTGAATGTCTCAGGTACATGTTCATTGCGTTACTCATGGTCCCGGTTCAGTTTTATGCCGCCAATATATTGGCCCCACTTATGGCGTGGACCTACTTTGGCGCTGTCAGGTTCGAAGTAATTGCTGCGTTGCCTTCCTTACTCTGGTACCGTTA | |||||||||
gi|109883824|gb|DW512794.1|DW512794 GH_TMIRS_166_G10_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): TTTACATAGGAATGTATGCTAAGAAGCTCGAAATGCTGTCCATTGCTTTTGCCGGCGACAGTAACAAAGGAATGCTCTACGTGTTGAACGGTTGCAAAAAACTCCGCAAGCTAGAGATTAGGGACTGCCCCTTTGGTGACGTAGCACTTTTACAGGACATGGGAAAGTATGAAACAATGCGATCCCTTTGGATGTCCTCCTGCGAAGTTACCCTCGGAGCCTGCAAGACCCTCGCAAAGAAGATGCCAAGCCTGAATGTGGAGATCATAAACGAAAGTGAAAAGTTGGAAAGTGAACAGTTGGAATTTAGCTTCGATGATAGGCTTCTGGTAGACAAGATGTATTTGTATCGGACATTGGTGGGGGATAGGAAAGATGCGCCGGAGTATGTGTGGCTTTTGTAGGCGCATTATTTTGGCTCAGCCGTTTTCATTTCTGTTTTGTTAAAACTAGAGTACTACTTTGTTAGGGACAATTTTATTTTCATGGATCTAGCTGGTCGGTGATCTAGAGATGTATGCTACCTTTGTTTAATTTACAAGAGATTTGGTATTTGTAATCCTTGTTATTTAAAGTTGGCATCCTATCCAGCAATGCAATGAAGTTTGTGGATTAAG | |||||||||
gi|109832254|gb|DW230813.1|DW230813 GH_OVfbl_01-01-15R_E03_InvR_29Jan04_023_F Ovules - day of anthesis from a fiberless mutant G TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): TATCTGGGTTTTTGGAGGTTGCTCCTTGTTGCATGTCAGCTATTTATCCTATTTGCGAAAACCTGACCTTCTTGAACTTGAGCTATGCTCCGGGTCTTCAAGGTAATGATCTCACGAAGCTGGTTCAGCACTGCGGGAAACTTCAGCGTCTGTGGATACTGGATTGTATTGGAGACAAAGGACTCGGAGTTGTAGCTTCAACTTGTAAAGAATTGCAGGAATTGAGGGTTTTCCCATCGGATCCATTTGATGCCGAAAATGCTGCAGTGACAGAGGAAGGTTTGGTCCTTATATCTGCAGGATGTCCTAAGCTCAACTCATTGCTGTATTTCTGTCATCAGATGACGAATGCTGCCCTCATCACTGTAGCCAAGAATTGCACAAATTTTATCCGTTTCAGGTTGTGCATCCTTGACCCCGTAAAAGCTGACCCTGTAACCAATCAGCCATTGGATGAAGGTTTTGGGGCAATTGTCCGGTCTAACAAGAGTCTGAAGCGTTTATCACTCTCTGGCCTTCTGACTGATCAGGTTTTTCTTTACATAGGAATGTATGCTAAGAAGCTCGAAATGCTGTCCATTGCTTTTGCCGGCGACAGTAACAAAGGAATGCTCTACGTGTTGAACGGTTGCAAAAAACTCCGCAAGCTAGAGATTAGGGACTGCCCCTTTGGTGACGTAGCACTTTTACAGGACATGGGAAAGTATGAAACAATGCGATCCCTTTGGATGTCCTCCTGCGAAGTTACCCTCGGAGCCCTGCAGACCCTCGCAAAGAAGATGCCCAGCCTGAATGTGGAGATCATAAACGAAAGTGAAAAGTT | |||||||||