miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGAAGTGTTTGGGGGAACTC
species: Gossypium hirsutum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|164285664|gb|ES832574.1|ES832574 UFL_416_85 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
.|| |||||||. |.|||||
GCTGCACAAACTGCTTTGAG

EST sequence (targeted fragment marked with yellow):
GGATTTCAAAGGCTCGCGCCAATGAGCTTTCATGGCGTCCAAATCGTCTAAGAAGAAGCCTAACAGCAAGCGGTCAAGCTCCAAGCCCGCCTCCTCCCCGATGGCATCTCCGAAGCATTTTCATCTCAAAAGATTCTTCATTTTAATTTCGATTATGTTGCCTGTTTGTGTAATTGTTGTTTTGGGAGTTTCGTCAAACACGTCGTTTAAGATATCGTCGGATCATTACTCCGTTAAGATTTACGGATTTGAATTAGTCAATGAATTCCCCCACGATCCCCGTGCTTTCACTCAGGGCCTTGTTTATGCTGGAAATGAATCCTTATACGAGTCAACTGGACTTTACAAGCAGTCAACTGTTCGCAGAGTAGCTATTCAGACGGGAAAGGTTGAGGTTCTTCACAAGATGCCTGATTCATTTTTTGGAGAGGGTTTAACCCTTCTCGGTGAAAGGCTGTTCCAAGTAACTTGGTTGACGAAAATTGGTTTCATATATGACACAAAAAATTTGCAGAAATTAGATCGATTTACACATCAGATGGAAGATGGTTGGGGCCTAGCAACTGATGGCAAAATCTTATATGGAAGTGATGGGACTTCGACACTGTATCAGATAGATCCTCAAACATTAAAAGCCACAAGAAAGCAAGTCATCCATTTTATGGGCCGTGAAATACGCTATCTGAATGAATTGGAAAAAATAAATGGTGAAATATGGGCAAATGGTTGGCAGAACTGACTGATTGGTAAGAATCTCACCTAAAGGTGGGAAGAAGGCTTGGAAGGGATTCTTCTCCCCAACTTTAAAAAAAGGACTCCAAACAAGCTGGGAATAAACGGAATTGAAGGTTTTAAAAGGGGCTTTGCTTGGGGAAAACAAACAAAAAACGCAATTTTTGGTTAATGGGAAAAACCTTGGGGCCAAAAGCTTTATAGAAAATTCAAGCTTAAATCTCAGTAAAGGGAAAAAAAATCGAAAAAAAAAAA



gi|84170153|gb|DR458801.1|DR458801 CM069E12 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
||||||||||||.|.| |.
ACTTCACAAACCTCTTAGGC

EST sequence (targeted fragment marked with yellow):
GCTACTTCGGATTCTCCAAACACTTCAGCTGGATCTGATATTGAAACAAACCCTAATCCTAATTCTTCAAAAGCCATAATCCTAACACCATCCAATTCCAATTCCCCTGCCGTATGCCTCTTCCAATTCGCAGGAGACTCCGCCGCCGGTGCCTTCATGGGCTCCATCTTTGGCTACGGGTCAGGATTGATTAAAAAGAAAGGCTTTAAAGGATCCTTTGTGGAGGCAGGATCTTACGCCAAGACATTTGCAGTTTTGTCCGGCGTTCACAGTTTGGTTGTTTGCTTTTTGAAGAGGCTTCGGGGAAAAGATGATGTTATTAATGCCGGTGTAGCCGGATGCTGCACTGGACTTGCTCTAAGTTTCCCAGGTGCACCTCAGGCACTTCTACAGAGCTGTCTCACCTTTGGGGCATTCTCATTTATCATCGAAGGGC



gi|109828096|gb|DW226735.1|DW226735 GH_HYPT_01-01-25R_B05_InvR_29Apr04_045_F Stem - 3 weeks after planting Gossypium hirsutum cD

TGAAGTGTTTGGGGGAACTC
||||||..|||...||||.|
ACTTCATGAACTTTCTTGGG

EST sequence (targeted fragment marked with yellow):
TGGGGGAAGGGTTCTTTCAAGTACTTCATCATTATATCATCCAAATTCATCATATTTTTCCCATTTTATTTAGCAATTTAAGAAAACATGAGCAGGCCAGGAGATTGGAACTGCAGGTCATGCCAACACCTCAACTTCCAAAGGAGGGACAACTGCCAACGTTGCGGTGAATCTCGATACGGTATTAGAGTCGGCTCGACATTGGGGTTCACCGCAGGCTCGGACGTTCGACCTGGTGACTGGTATTGCACGGCTGGAAACTGCGGCACCCACAATTTCGCGAGCCGGTCTACTTGTTTCAATTGCGGCGCGTTCAAGGACGAGTCGGGTGGAGGTTTCGACTTCGACATGTCTCGATCAAGAGGGTTCGGAGGTAACCGATCCGGCTGGAAATCAGGGGATTGGATATGTACCAGGTTAGGGTGCAATGAACATAATTTTGCTAGCAGAATGGAATGTTTCAGATGCAGTGCTCCAAGAGAATTCAACAATAGAACTTCATATTAAATCACATGCATGCTACTATATCCATTTTTGGGTGTTTTGAGGCAATTAATAGGAGATTATAATGAGAGAGTGTTACTGGCTTTGATGATGAACACCACAAGCATTTTGTCATGTTTCTTTTATAAGATTCATGGCAATGTAGTACTTTTTCTTGTGATGATTATTTATGGTTTCAATTCTATGGTTTTATTGTCTTTTATTTTAGAGAGTTTTATTTATATTTTTGTAATGGTGCTTTGGCTTTATTAAAAG



gi|109875703|gb|DW504677.1|DW504677 GH_TMIRS_086_E12_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

TGAAGTGTTTGGGGGAACTC
||||||||||||.|.| |.
ACTTCACAAACCTCTTAGGC

EST sequence (targeted fragment marked with yellow):
AACTCATAGTAGTTTTTGGACAAAAATGGCTACTTCGGATTCTCCAAACACTTCAGCTGAGTCTGATATTGAAACAAACCCTAATCCTAATTCTTCAAAAGCCATAATCCCAACACCATCCAATTCCAATTCCCCTGCCGTATGCCTCTTCCAATTCGCAGGAGACTCCGCCGCCGGTGCCTTCATGGGCTCAATCTTTGGCTACGGGTCAGGATTGATTAAAAAGAAAGGCTTTAAAGGATCCTTTGTGGAGGCAGGATCTTATGCCAAGACATTTGCAGTTTTGTCCGGCGTTCACAGTTTGGTTGTTTGCTTTTTGAAGAGGCTTCGGGGAAAAGATGATGTTATTAATGCCGGTGTAGCTGGATGCTGCACTGGACTTGCTCTAAGTTTCCCAGGTGCACCTCAGGCACTTCTACAGAGCTGTCTCACCTTTGGGGCATTCTCATTTATCATCGAAGGGCTTAACAAGCAGCAGCCAGCATTGGCACATTCATTTTCTGCGAGAAACGAGAGTGCACACCACAAAGGACCTCGTCCTTTAGCACTACCCCTTTCTATCCCTATTCCGGATGAGCTGAAAGGAGCTTTTTCTTCATTCTGCAAGTCCTTGGTAAAACCAAATAAAGGTAGGTTTCCTACAGGTAACTAAGGAGTAGGTGGGCCATTTTTCATTTTTCCTGTTGTTTGTAGAATTTTGCAAGTGTTGAGAANGTAAACTGAAAGTTTTGTCAGAGATTTGAAGCTTTTTACAAGCAGAAAGATGAAATTGCTTCTTTTCT



gi|78323938|gb|DT544212.1|DT544212 EST1054852 GH_TMO Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
.|||.||||||.||.||||
GCTTTACAAACTCCTTTGAC

EST sequence (targeted fragment marked with yellow):
GAGAAGTCTTTTCCTCTGCATGAATGCCATGTAAACAAAGTCACCATCATCATCAACAGAACCCATGCAATCCTCCATTCCATAGCCATACTCTTGTTGATTCATTACAGGCTTTCTTTCTTTTTCCAACACCCCCAAAACATCACCATCCCCACTCTTCCATGGCTTCTAATCTTCGTCTCCGAGTTGATTCTCTCTTTTGCATGGTTCCTTCAACAAGCCTGCCGTTGGCGCCCGGTTTATCGGACCGTATTCCCCGAGAGGTTGCCGGCTGATGATAAGCTTCCGGCCATTGACGTGTTCATTTGCACTGCGGATCCAAACAAGGAGCCGAGTGTGGAAGTTATGAACACTGTGATATCAGCCATGGCGTTGGATTATCCACCGGAAAAGCTTCATGTTTATATATCCGACGATGCCGGCTCCAATGCGACGTTGCGTTGTACGAAGGAGGCTTGGAACTTTGCCAAGTATTGGGTTCCTTTTCGTAGGAAATATGGTCTCGTGACTGCTTGTCCGGACGTTTATTTTTCAAGCTCCGAAAATGATAATGGAGACTATAAGGGTTCCGAATTTAAGGCAGAGAGGAAAAAGATGGAGGAAAAATATGAGGTTCTGAAGCAACGGCTAAGGAAAATTGTTGAAGGACACTTTCCCACAAATGTTGCCATCAACAATACTCGGGACCATCCTTCAGTAATTGAGGTCATAAATAAAGAGGAAGATGAAGTTAAAATACCCCAACTTATTTATGTTTCTCGTGAGAAAAGACCTTCTCATAATCATAATTTCAAAGCTGGAGCCCTCAACGTCCTTCTTCGGGTCTCAGCGATGATAAGCAATTCTCCGTATATCCTAGCCCTTGACTGCGACATGTACTGCAATGACCCAACTTCAGCTAGGAAAGCAATGTGTTTTTACTGTGATTCTCAAACACCTTCTTCTTTAGCATTCGTGCAGTTTCCTCAAACATTTCGAATATAAGTCAGATGACATCTACGACAC



gi|84170715|gb|DR459363.1|DR459363 CM075E05 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
.||||||..||.| .|||||
GCTTCACGGACTCGTTTGAG

EST sequence (targeted fragment marked with yellow):
GGCATGAGGAAATCTTTCATTTCTCGAGTCTTTTTCGGGGTTTTCTCTTTTTTTTTTCGTCGGATCTTCAACACTTTTTTCAAAAATGGCTGAGCACGAAGAGAAGAAGCACGAGTGAATCGTTGATGGAAAGGATAGCCGAGAAGATCCAATGTCATGATTCGTCGTCATCGGATTCCGATAATGACAAGCCATCGGAATCATCGATCAATGCCAATGTCTTCCGTCTTTTTGGAAGAGAAAAGCCCGTTCACCACGTTCTCGGTGGAGGCAAACCGGCTGACATTTTCCTTTGGAGGAACAAAAAGATATCGGCAGGAGCGCTCGGTGTCGCAACTGTGATATGGATTTTGTATGAAATGCTCGAATACCACCTTCTCACACTAGTGTGTCATTTGTTGATACTTGCTCTTGCAGTACTGTTCTTGTGGTCAAATGCTGCTACCTTCATTAACAAGTCTCCACCACGCATCCCTGAAAGTCAAATTCCTAAGGACCCAGTAATGGAGTTTGCTCAGGCACTTCGGCTTGAGATCAACCGGGCTTTTGCTGCCTACGGGATATTGCATCAGGAGAGAACTCAGAAGTTCTATCTGTGATCGCGGATATGGTCTGGCTATGCCGAGTGGTCGATTCTTACTGTTGATATCTTCGATCTTCAATACCGGTATTAAATTCAGCTGTGCCTTGTGTAAGAGTTAATAACA



gi|164251192|gb|ES801845.1|ES801845 UFL_499_64 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
||||| ||||||.|||||||
ACTTCTCAAACCTCCTTGAG

EST sequence (targeted fragment marked with yellow):
CGACACTAGTGGATCAAGATTCGGCACGAGACCAAACCGGGTTTTGTTTTGGTTCTCTCTTCCAATGGCTTCCACCATTTTCATCCAACCTTCGTTTACGTCAAAGTCTTTGAATAAATCCCTGAATACCCATTTCGTCCCTTCCTTCAAACTCCCCGGTTTGGTCTCTTTCAAGCCCCGAACGGTTTCCCAGTTGGCGGGTCGAGCCGGGTTGATCGAGCCGGACGGTGGGAAGCTCGTGGACCTCCACGTGGCGGAGCCGGAGCGGGGGTTGAAGAAGCGAGAAGCGGCTCTGTTGCCCAGGGTGAAGCTGACCAGGATCGACTTGCAATGGGTCCATGTTTTGAGTGAGGGCTGGGCAAGCCCCCTCAGCGGGTTCATGAGAGAATCCGAGTTCCTCCAAACTCTTCATGGGGGGGGGGGGGCAACTCGGCGATGGTTCTTTCGGCAAGATGTCGGTGCCGATTGGGTTGGCGATTGATGATTCTCAAAATGAGAGGATCGCTGAGTCCAAAAGAGTCACGCTCGTTGACTCGGATGATAACCGCGTCGCGATCCTCGAACAACCTTGAAATTTATAAGCACCCGAAGGAAGAAAGGATAGCGAGGACATGGGGAAGTACCTGCCCTGGATTGGCAGATGAGGGGGAGCCTATAACAAAGGGTGGAAATTGGCTGATGGGAGGTGATTTTTCATGTTATTGGAGGCGAGGGGGGAGCGTGAGGGCCTCAAACGGTTATAGGGGAGAAATTGGAAGATGCAGAGAGAGGCTCGAAAGGGGGGTGGGGGAGGGGGGGGGGGGCAGGCAGGAAGGGAGGGGGGTGGGGGGGGGCGGAGAGAAAGGGGAGGGCGGGCGCGTCCGAAAGGGAGCGTGGGGGGGAGTGAGAGGGGGGGGAGAAGAGGGGGGGGGACGGGAGGAGGGGGGGGCGGGGGAAGGGGCGGGGACCCCGCGCATGCGGGAGGAAGGAGGGGGGGAGGGGGGGGAGGGGGAGGGGGG



gi|109864443|gb|DW493419.1|DW493419 GH_RMIRS_096_G02_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq

TGAAGTGTTTGGGGGAACTC
|.|||||||||.||.|| ||
ATTTCACAAACTCCTTTAAG

EST sequence (targeted fragment marked with yellow):
ATCAGGCAGAGGACGAGACAAACAAGGCCTAAATGAAACACTACTGGAGAAGTTTTTGGAAAAAAAGGGTAATACCCCCATGAACTGTATACCCACCTGAATGCCAGAAAATATGGGAAACCCCCAAAACTCAATTCTCCTCACTGGTCCCAAACAGTTTCATTCTCGATAAAGATGTCCTTAAGTATCCATCCACCTCAAACTTCTTTGGTGAAAGCTCCTTATACTTTGCGAACTGTTCTTTAGCTTCAGCATTCCTATCAAGCAAGCTATATATGATACCTTGACAAAAATACGGCCTAAAATCAGTTGGATCTTCTTTGGCCAATTCCTGGTAACTCATCAAAGATTCGTCCACGTTCTTTTGCAAGAACTGTATCTGCGCCATTATGAATCGAACATCCCTAGCTTCTTTGACTTTCTTCTCTTCTTGGGCCCTGGCTAAAGCCTCTTCTAACCTCCTGATCACGGCTTCGCCTTCCCCACAACGGTCCATCAATAACGCATTCTCGAACAAAGCTTCGAAAGAGAGCGGATTCGACTGAAGAATTTCCTCAAACACTTTACGTGCATTCTCCGTTTGACCCATTTCCCCCAACAGCCTCCCTAACAAGAATTTCCAATCAATAACATCTGGTTGTGCAGAAACCAATCGGTTCAAGATACTCAGCGCTTCTTCGTCTTCGCCGTTTTCGAGCTTCTGTTGCAAAAGCGACTGTAATGCCGCAATGGCTTCGTCATTAGATCCCAGAAACTCAGAAAACGGTGAAGTTTCTTTTGGGCTTTGGGTTTTCAGTTGTTCGTTTTCCTGGAGAACTGC



gi|109876759|gb|DW505733.1|DW505733 GH_TMIRS_096_G06_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

TGAAGTGTTTGGGGGAACTC
||||||..|||...||||.|
ACTTCATGAACTTTCTTGGG

EST sequence (targeted fragment marked with yellow):
AAGAACGCAGAAAAGGGTTCTTTCAAGTACTTCATCATTATATCATCCAAATTCAGCATATTTTTCCCATTTTATTTAGCAATTTAAGAAAACATGAGCAGGCCAGGAGATTGGAACTGCTGGTCATGCCAACACCTCAACTTCCAAAGGAGGGACAACTGCCAACGTTGCGGTGAATCTCGATACGGTGTTAGAGTCGGCTCGACATTCGGGTTTACCGCAGGCTCGGACGTTCGACCTGGTGACTGGTATTGCACGGCTGGAAACTGCGGCACCCACAATTTCGCCAGCCGGTCTACTTGTTTCAATTGCGGCGCGTTCAAGGACGAGTCGGCTGGAGGTTTCGACTTGGACATGTCTCGATCAAGAGGGTTCGGAGGTAACCGATCCGGCTGGAAATCAGGGGATTGGATATGTACCAGGTTAGGGTGCAATGAACATAATTTTGCTAGCAGAATGGAATGCTTCAGATGCAGTGCTCCAAGAGAATTCAACAATAGAACTTCATATTAAATCACATGCACGCTACTATATCCATTTTTGGGTGTTTTGAGGCAATTAATAGGAGATTATAATGAGAGAATGTTACTGGCTTTGATGATGAACACCACAAGCATTTTGTCATGTTTCTTTGATAAGATTCATGGCAATGTAGTACTTTTTCTTGTGATGATTATTTATGGTTTCAATTCTATGGTTTTATTGTCTTTTATTTTAGAGAGTTTTATTTATATTTTTGTAATGGTGCTTTGGCTTTATT



gi|164309200|gb|ES835485.1|ES835485 UFL_009_57 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
||||| ||||||.|||||||
ACTTCTCAAACCTCCTTGAG

EST sequence (targeted fragment marked with yellow):
GGCACGAGAAGAAGCAGAACCAAACCGGGTTTTCTTTTGGTTCTCTCTTCCAATGGCTTCCACCATTTTCATCCAACCTTCGTTTACGTCAAAGTCTTTGAATAAGTCCCTGAATACCCATTTCGTCCCTTCCTTCAAACTCCCCGGTTCGGTCTCTTTCAACCCCCGAACGGTTTCCCAGTTGTCGGTTCGAGCCGGGTTGATCGAGCCTGACGGTGGGAAGCTCGTGGACCTCCACGTGGCGGAGCCGGAGCGGGGGTTGAAGAAGCGAGAAGCGGCTCTGTTGCCCAGGGTGAAGCTGAGCAGGATCGACTTGCAATGGGTCCATGTTTTGAGTGAGGGCTGGGCAAGCCCCCTCACCGGGTTCATGAGAGAATCCGAGTTCCTCCAAACTCTTCATTTTAATTCGCTCCGACTCGGCGATGGTTCTTTCGTCAACATGTCGGCGCCGATTGTGTTGGCGATTGATGATTCTCAAAAGGAGAGGATCGCTGAGTCCAAAAGAGTCACGCTCGTTGACTTGGATGATAACCCCGTTGCGATCCTCAACAACATTGAGATTTATAAGCACCCGAAGGAAGAAAGGATAGCGAGGACATGGGGAACTACTGCCCCTGGATTGCCATATGTTGAAGAAACTATAACAAAAGCTGGAAATTGGCTCATTGGAGGTGATTTGGAGGTTATAGAGCCGATCAAGTACCATGAATGGTCTCGATCATTTTCGGCTTTCACCTGTTGAGTTACGTCAAGAGTTTGAAAAACGCCATGCTGATGCCGTGTTTGCATTCCAGCTCAGAAATCCTGGTCACAATGGTCATGCTTTGCTAATGACCGATACTCGCCGTAGGCTTCTTGAGATGGGGTACAAGAACCCCATA



gi|164270967|gb|ES800010.1|ES800010 UFL_615_59 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
.|||.||||||.||.||||
GCTTTACAAACTCCTTTGAC

EST sequence (targeted fragment marked with yellow):
GGCACGAGGATTATCCACCGGAAACGCTTCATGTTTATATATCCGACGATGCCGGCTCCAATGCGACGTTGCGTTGTACGAAGGAGGCTTGGAACTTTGCCAAGTATTGGGTTCCTTTTCGTAGGAAATATGGTCTCGTGACTGCTTGTCCGGACGTTTATTTTTCAAGCTCCGAAAATGATAATGGAGACTATAAGGGTTCCGAATTTAAGGCAGAGAGGAAAAAGATGGAGGAAAAATATGAGGTTCTGAAGCAACGGCTAAGGAAAATTGTTGAAGGACACTTTCCCACAAATGTTGCCATCAACAATACTCGGGACCATCCTTCAGTAATTGAGGTCATAAATAAAGAGGAAGATGAAGTTAAAATACCCCAACTTATTTATGTTTCTCGTGAGAAAAGACCTTCTCATAATCATAATTTCAAAGCTGGAGCCCTCAACGTCCTTCTTCGGGTCTCAGCGATGATAAGCAATTCTCCGTATATCCTAGCCCTTGACTGCGACATGTACTGCAATGACCCAACTTCAGCTAGGAAAGCAATGTGTTTTTACTGTGATTCTCAAACACCTTCTTCTTTAGCATTCGTGCAGTTTCCTCAAACATTTCGAAATATAAGTCAAGATGACATCTACGACAACCAAGTCCGATTTGCATTTAAGGTACATTGGTATGGTTTTGATGGCGTCGGAGGACCAATAATATCAGGTTCAAACTTTTGTATAAAGAGAGAGGCTTTATTGGGTAGTTTTAACAAGCAACAAGATTATATGGCACTCAAGAGATTATTTTGGTCCATCCAATGACTTCATTAAAACCCTAGTTGAAGATTATAAGCCTTGTTTCATAAAGGATGGGGAATCTTCAAGGATGTCGCTCGAAAAATGGCAACCTTTTAGCCTCTTGCTCCTACGAAAATCAGAACGTATGGGGGTTCAAAGGTGGGGTTTTCTATTTTTTTTCTGGTGCCAAAAAATTACTTTTACTGGGACTTTATTTTATCCTCCGTAAAAGGCTGGGAAATTCAGTGGAATCTTTAATTCCTTGAAAGGGGTTACAAATTTCTTGGGGGGACAAAGCCCCCCCAAAAATTTTCAAATGAACTCGTTTTATTTTAAGTGGGAAAAAAAATGGGGAAATTCTGGGGGCCCTGGTTTACCCGGTTGTTCTCTTTTCCTAGGTTTTTTGCCCCCCTCTCTATTTTTTTTGGGGGCCCCTTTAAAAAAAAAGGGTGCTTTTGTGGTTACTCACCTTTTTTTTTGGGGCTATTATTTTACAAAAAACATTGTGGGACATTTTTTTGGGCCCCCTCTCTTTTTCTTTATTAATTGTTGTCTCGCCTTTTTTCTTCCTCTCTTTGTGTGTGGGGGG



gi|193217466|gb|EY197594.1|EY197594 BC_005_86 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA sequen

TGAAGTGTTTGGGGGAACTC
||||.|||||||.||| .|
ACTTTACAAACCTCCTCTGG

EST sequence (targeted fragment marked with yellow):
AGGGGGGGCTCGCGCGCCTGCAGGTCGNACACTAGTGGATCCAAAGAATTCGGCACGAGCTAGTCTCGAGTTTTTTTTTTTTTTTTTTGAGACAATCTTGAAATACTAGATTTTATTGCATTCTCAAGCTATTCTTACAATTACAAAGTACAAAGCAATAAAGGGATTGCTTCCCAAGAAGTTAAAATAGATTACAACGGCAATAGATTTTTACTACAAACCAGAGGCTTTCAATATCCTAAACAACAAAAACCTTTGCACATGGACTCAGTATAAACTGTCGTCTCAATGAGCTTCTACTGGCTCCGATCACTGCTTCCTTCTGTATATCATGCAGAACGAACAAATTGTATATATACATAGAGCTTATCTCCAATCATTTTTCACAATTTATATAAGAGCTTATTATACCCAGGGGGTGTGTTGTGCATTTGTACAACTTCACCTGGGAATGCCAAAACAAATGGTTGGTGTTGTGATCTGGGGATTGTGGGCTTATTTATCCAAAATAACCCGAAAAAGTGCAGAATGACATGTTGGATTGAGAAAGAACAATGAAGAACCATGTTTATTTCATGTACTTTCTGATGAGCTCCATCAGCTGCAAATGACCTCCACTGAGAGCTTCTTCATGACACTAGGACACGGGTCTCCTCCAAACATTTCAGGAGCTACGGTCACTGTGCAGAAGTTCTGTCCTAAGCAAAGCCTATTAAAAGCATCATATGAGTGGTGAGCATGACAGCTTCCTTCACGGTAGCTTCCACAGACCCCTTCAGGAGTTCCAAAGCTAGCAAACTTTACAGCCGAGATTTTCTGCCCTGCATCACACTCTAAATGGACTTTTGGCCTTAGGGGTTTGTTGACTTTACCAAAGGCTTGCATCTCGTAATTCATTAAGGGTTGGTTGCCACTCATAAATATCAGCACAAACACTGGTCGTTTCTCTGCGAACCCATGAAATTCCTTTGGATCCCCCACCCGAT



gi|164334444|gb|ES816179.1|ES816179 UFL_297_85 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
||||.|||||||. |||.|
ACTTTACAAACCTAATTGGG

EST sequence (targeted fragment marked with yellow):
GGCACGAGAATAGCCCTCTCCACCGAACCATTTCCAGTGCAACCAATAGCTACTTCTTTGACAGAATCTCACCTACATGGCCAGAGGAAAAACTTCTTTTGGCAACTCGGACCAGGAGCCCCAGGATCAGTTTGGACTATACCTCAGGGGTTAATCCAAACATTTCAGCCTGGGGTATGGTGATCGTGACTGCTGGCCTACGAGGTGAGATCAGAACTTACCAAAATTTTGGATTACCGGTTCGAATTTGATGAACCAAAAAAAAGAAAATGGTAGGTAGCATCAAAGGGTTGGGGGTTGGGGAGGGGGAATGAGTTGATAATGTGTCAATACAATCCTTTCCCTCCCTTTGGTTAAAATTGTGTACAGAGAGTGAGATATTGGTTGAGATTTGTAATATTAGCTGAGTTTCATTTCTTTCTTTGTTCCTCTGCCCATTGGATGTGGGGGGCAATGGAAAGCCACTCCATTTGAGCATTGACGAAAGTATAGATTTGTTCAGAGAAAAAAAAAAAAAAAAAAAA



gi|164245764|gb|ES793620.1|ES793620 UFL_604_63 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
.||||.|||||||.| ||.|
GCTTCGCAAACCCTCGTGGG

EST sequence (targeted fragment marked with yellow):
GGCACGAGGAAATCTGCTGCCGTACGGACCCGAAGGCAGCAGCCGAATTCCTACTCCTAAAGCATATTCTCTTCGTTTCACCCTCTAAATCGGTGCATCGTCCGCCGTGATCGGACTCCGTTCAGTGTTATTTACAGGCGACAATGGATTTAGACGGCGGCGCCGGCAATAATAAGCGTGTCTTCAACCGGCTTGGAACAGACACTTCTAAAAACCAGAAAGTTTGTTTCCATTGGCGGGCCGGTAAGTGTACCCGTTTTCCTTGCTCTTTCTTGCACACCGAACCGTCTCATCCTTCGGGCTCCGCCGCCGCCTCCTCCACCGCTAACGGATCGGGTGCTCCCAAACGCTTCGCTGATGATTCCGGATTCTCGGGTTCGGCTCAACGACGAGGCCCGAACTTCAAAAATAATCATAATAATAGTTGGGGGAGAATGGGAGCTAATAATAAGGTGGTTAGAAAAACGGAGAAAGTATGTAATTATTGGGTGCAAGGGAACTGTACTTTCGGAGACAAGTGTAGGTTTTTACATTCATGGAGTTTAGGTGAAGGTTTTAGCATGTTGAATCACCTTGATGGGCACCAGAAACTTCTCAGTGGAATTGTGCTGCCAGCAGGTATGGATAAGCTTTTTACAGGGAGTAAAGATGAGACGTTGAGGGCTTGGGATGCCAACTCTGGTCAGTGTACGGGTGTGATTAATCTTGGTGGTGAAGTGGGTTGCATGATCAGTGAAGGTCTTTGGTTGTTTGTTGGCATACCGAACGCTGTCAAGGCATGGAACACGCAAACTAACCAAGAGTTCAGTCTTAGTGGACCTGCTGGGCAAGTTTATGCTATGATTGTCGGGAATAGTTTGCTCTTTGCTGGTACACAGGGTCAGTCACCTTCAATCATCGGTTTTCTGCAAGAAGGTATATTGGCTTGGAAATTTAATGGCGTCACCAATAGCTTTGAAACCAGCACATCACTCAAAGGTCATACCCTTTCCTGTTGTATCATTAAAGGGTTGGGGACCTACAAAAACTAAATTTTCAGGTTCCCTGGGACCATTCTTATAAAGGGTTGTGGGTTTTGGAAAATTTTTTCAAGGGCCTCCAAAACCCTAAAAAAATAAAAAATAAAGGGTTGTTTTGTTTTTTTGTTTTTGGGGGGGATATTTTTTTTTTTTATTTGTTTTTTTTTGGTGACCAAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGGTGGGGAGAAAGGGGAAAAAGCGGGGGGGGAAAAGAAAAAAAAAAAAACAACTCCCCCAAAAACAAAAAAAAAAAAAA



gi|164300459|gb|ES807499.1|ES807499 UFL_620_63 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
.|||.||||||||. || ||
GCTTTACAAACCCTATTTAG

EST sequence (targeted fragment marked with yellow):
GGCACGAGCTCAACTTTCAGGTAATTTATAATTACGTTGGGTTTGAAGTTAAAAAGCATCACACTTAACAGTAATACAGAAAAAAAGATTACACCATAAAAGAAGATGCCATATTTCAACACCACTGCAACACGAACCACATTAGAATTGCAGGGCTGGTCCTAGATTACTTGTTTAGCATTCGAATTCACTATCCAAATATTTGTGATAATGACTTGTTGATGATTTGGAACAGTTCTTCCTGATCTGGTTTGAACAATAGATACCGGTAAATAAACCACAAGGAAAACAGTATGCCAATAATTTCCAGCACATTTGGGATAATTGGCAATTTGTCAATAACCGAAATCAAATTAGTTGAAGTCCACAGGGCCACAATAGCTGCAAATCCCAGACCAGTGAGACCTACCCTATCTTCATCAGATTTATCCCAAACATTTCGCACAGACTTGACAATACTAAGTGAGGTAGAAGACTCTGAGCTATCACCGGTAGCCTTCACAAAAACAGCACAGTTTCGCCTCCCTCCGGTATAAGAAACTGGGAGTTTTGGAAAAGTCCCGAAAAGGGTCTTTCTATCTTGTAAAAGCAATGGCGGAAGCAGGTGTACAGTAAGGGAAGCCATGAAAAAACCTGCTAAAAAGCGCAAAGAAAAGCAATTCCGAAAAATGAGTTATATTCGTGGGAGTCCAAAAGGGTTTTAGAC



gi|164248245|gb|ES819143.1|ES819143 UFL_164_49 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
|||.|.|||||||.|||.|
CCTTTATAAACCCCTTTGGG

EST sequence (targeted fragment marked with yellow):
GGCACGAGGGCGATTGTTATTTGGCTCATCAACGCCTTGCCATCATCGACCCTGCCTCCGGCGACCAACCTCTCTTCAATGAAGACAAGAGTGTCGCCGTCACGGTGAATGGAGAGATTTATAACCATGAAGAACTAAGGAAGAATTTGGTGAACCACAAGTTCAGGACTGGCAGTGATTGTGATGTTATAGCACATTTGTATGAGGAGTACGGGGAAGACTTTGTGGACATGTTGGATGGAATCTTCTCATNTGTGCTATTGGATACTCGTGANCATAGCTATATTGTCGCTCGTGATGCCATTGGTGTCACCTCACTTTATATTGGATGGGGACTCGATGGTTCAGTTTGGATAGCATCAGAATTGAACGGATTAAATGATGACTGCGAACATTCGAAAGCTTTCTCCCGTTCATTATACTCGAATAAATCTGGAAGTTTAGGAAATGTATTATCCACCTGGGTTTCAAAGGTCATCCATCCGTTCATAAAACCCCTTGTTCTTAACTGGCTTTGAAAATGTGGGGACAAAAAGTTGAAAACGGATGGCCCTTTGGGATTTCGGTTTTTGGGGGATTGGAACCCCCCTTATGGGCTCCCCCCCCAACCCGGATTTGGGTGGGCCCCAAGGGGGCCCAAAAATGGGGAAAGCCCCCCCCCCTTCTCTCTGGGTGGGGCCCAAGGGTTCCCCCAAATTTAAGGGCGCGCAAAAAGGGGGCACAAATTTTGGGGCCGGGTTTCCCCAAATATTTCCTTCCCCCGCTCCAAAAGGAATAGGCCCCCCCAAAAATTTTTTCCCCCTGTTAGACACCCGGTGTCCCCCCCAATAAAAATTCCTCTCTTTTT



gi|164265903|gb|ES792846.1|ES792846 UFL_618_07 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
.||||.|||||||.| ||.|
GCTTCGCAAACCCTCGTGGG

EST sequence (targeted fragment marked with yellow):
GGCACGAGAACGGATCGGGTGCTCCCAAACGCTTCGCTGATGATTCCAGATTCTCGGGTTCGGCTCAACGACGAGGCCCGAACTTCAAAAATAATCATAATAATAGTTGGGGGAGAATGGGAGCTAATAATAAGGTGGTTAGAAAAACAGAGAAAGTATGTAATTATTGGGTGCAAGGGAACTGTACTTTCGGAGACAAGTGTAGGTTTTTACATTCATGGAGTTTAGGTGAAGGTTTTAGCATGTTGAATCACCTTGATGGGCACCAGAAACTTCTCAGTGGAATTGTGTTGCCAGCAGGTATGGATAAGCTTTTTACAGGGAGTAAAGATGAGACGTTGAGGGCTTGGGATGCCAACTCTGGTCAGTGTACGGGTGTGATTAATCTTGGTGGTGAAGTGGGTTGCATGATCAGTGAAGGCCTTTGGTTGTTTGTTGGCATACCAAACGCTGTCAAGGCATGGAACACACAAACTAACCAAGAGTTCAGTCTTAGTGGACCTGCTGGGCAAGTTTATGCTATGATTGTCGGGAATGGTTTGCTCTTTGCTGGTACACAGGAAGGTATATTGGCTTGGAAATTTAATGCCGTCACCAATAGCTTTGAACCGGCAGCATCACTCAAAGGTCATACCCTTCCTGTTGTATCATTAATGGTTGGAGCTAACAGACTATATTCAGGTTCCATGGACCATTCTATAAAGGTCTGGAGTTTGGAAACTTTGCAATGGCTACAGACTCTAACAGAGCATACTAATGTTGTTATGTCCTTGCTTTGCTGGGATCAGTTTCTTCTATCTTGTTCATTGGACCAAACAATAAAAGTATGGGTGGCTTCTGAAAATGGAAACCTGGAAATAACATACACCTCACAACGAAAAACATGGCCTGGTTAATCCTTCTTGGGAGGCGCGACTTAAAATCCAAAGCCAGTCTTTGTGGGGGGGCATGCATGGACAATTATTGTCCCGGGTTTATGAACCTGCCCGCCGTTTCTCCGGAGGGGGGGAAAAATTTTTTGCTTAAAACAGGAAAAATCCAAGGCCATCCAAAATAAGGGCCCTAGTGGGCCTTCTTTTTTCCTTGGGCGAACGGAACTGGGTTTTTAAAGTGGGGGAAAATGGGGGGGAACCCGATTTGGCTAAAAATTTGATTTGGCCTTGGGCACCATTTTTCATAAACACATTTTCTCCCCCCCCGGCAATTTTTTTTTGGGGGGTTAAATTTTTTTTTTTATTTTTTTTTTTTCATCCCTTTTTCGAGGGAAAAATTCTTTTCTTCGGGGGGAGAAAAAAAAAAAATTTTTGGGGGGGGTTTCCCCCCCCTCTTTTT



gi|109853030|gb|DW482009.1|DW482009 GH_RMIRS_034_A10_080_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA

TGAAGTGTTTGGGGGAACTC
|||||.||||||| |||||
ACTTCGCAAACCCAATTGAG

EST sequence (targeted fragment marked with yellow):
GATTACAATCATGGATGAGTTAACCCAAACGCTTCAAACAATCATGGGTTCCTTACCTCACACTGCTGCGGAGGCTCAGCAGCTAGACCTCGAGGATTCCAGTCGAACCGAGAGAGTGCAGTGGCTGATTAATTCACCTGAGCCTCCTAGTTTATGGCAGGAACTAGTTGGTACAGTCAAAGGAAGTTTGTTAACTCCTGGAAAAAAGAATTCCTCATCCAACGCCAAGGGGAAACATGCCATGTCCTTCCTCCGAGGTCTGTTTCCGATCCTCAGCTGGGGAAGGAATTACAAGGCTTCATTTTTTAAACATGATTTAATGGCGGGTTTAACACTCGCAAGTCTTAGCATTCCTCAGAGTATTGGATATGCTAATTTAGCGAAACTTGATCCTCAATACGGTCTATACACAAGCGTCGTCCCACCTCTTATATATGCGGTAATGGGGAGTTCAAGAGAGACAGCTATCGGACCGGTAGCCGTGGTTTCAATGCTGCTATCTTCCATGATTCCAGGCCTGGTGGATCCTGCAATTGACCCCATTGGGTACACAAGTCTAGTGTTCACCGTGACATTCTTTGCTGGAACTTTCCAAGCCATATTTGGATTGTTTAGACTGGGGAGTTGTCTCGTCCTCTGCCTGATG



gi|109860382|gb|DW489361.1|DW489361 GH_RMIRS_074_F02_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq

TGAAGTGTTTGGGGGAACTC
|||| ||||||..|.|| ||
ACTTGACAAACTTCTTTAAG

EST sequence (targeted fragment marked with yellow):
ATCAGGCAGAGGACGAGACAAGTTTCCTATATGCACCTTCAACACAGTATCCAAGCAATCTTACAAGATTCTTGTGCCTTACACGCCCAATTGCTTCCACCTCCACCTTAAATTCCTTCTCAGCTTGACCCCTGTTATTAAGCAAATTCTTAACAGCAACTTTAGCTCCATCAGTTAAAACGCCACTATAAACAATTCCATAGCCACCTTCCCCAATCACATTCTCTTCACACAATCCATTGGTAGCTAATTCAAGTTCCCTCAAAGTATACCATCTTCCCCACCCAAGATGAGACACTTCCGGACCCACACTTCCACTCCCAAACGACGCCGTCTCGCTCACACTAGCAGCGGCACTCGTCGGCCCTCTGCTTTCCCCACTGGAAAACACCACCCTGTGTTCCACTTTTCCCAAGTCAACTTGAATCTCCGGTACCGGCGGGGCGGCATGGTGGTGATCTGGTGCGGGAGGGTGATGGACTATTTCTTGGATCTCTTTGGAGATTGGCGGCGTGGGGTCCAGGTGTTGATGTCTACGAGATTTGCGGCGTGTCGTGAGGCAAAGTGAGAGAAGAAACAGAGTCAAGACTATGAGTGAACCAAGTAGAATACCGATCACCACCCATAATCTTAACCCGAATATCGACGTCGGCTTTGATAGCTCCGTGTTAACCAATGCCGCGTCGTACACTGACATTTCCTTTCTTTTTCAGAATTTCTTCAAACAGTTCAAGACTCCGGCAGGATTAACTACGCCGGAGAAACGACTTTCATTT



gi|109873006|gb|DW501981.1|DW501981 GH_TMIRS_062_A02_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

TGAAGTGTTTGGGGGAACTC
||||.|.||||...||| ||
ACTTTATAAACTTTCTTAAG

EST sequence (targeted fragment marked with yellow):
CAGCAATTTGCAGTACACAACTGAATTAAGCTCCTATGAAGCAGCTTGTAAGCTAGACAAAGAGCTGCAAACATTCGACACCAATGTCCAAGCTCGAACCAATCGAGTCATCAACACGCTAGCCATGGGTGTCGAGGTTCGAGCCCTTTCGTTCGATTCGCTCAAAGAGGTAACAGGTTGTCTCTTAGAGATGAACCGAGAGGTGGTTAAAGTTATCTTGGACTGCAAGAAAGATATATGGAAGAGCCAAGAATTGTTTGAGCTAGTTGAAGAGTACTTTGAGAACAGCCTGCAAACACTCGATTTTTGCTCCGCGTTGGAGAAGTGCCTAAAACGAGCTCGGGATAGCCAGTTGTTGATCCTAATGGCGCTGCAACAATTCGAGGACGAAAGCGAGGTTAACGGCAGCAAATATGCGGAGACATTGGAAGAACTGAGGAATTTCAAGGCAGCTGGGAACCCTTTCACTGATGAATTCTTTCAAATATTTCAATCTGTTTATAGGCAACAAATAGCAATGCTTGAGAAGCTGCATCAGAGGAAGAACAAGCTTGACAAGAAGCTCAAGTGTATCCACACGTGGCGTAAGGTATCGAGCATGATATTCGTTGCCACGTTCGCCACAGTGTTGATTTGTTCAGTTGTGGCAGCCGCCATGGCTGCTCCTCCGGTGGCTGCTGCACTCGCCGCTGCAACGTCCATCCCATTGGGTTCGATGGGGAAATGGATCGATTCCCTGTGGAGGAACTACGAANACGTGTTGAAAGGGCAAAAGGAAGTGATCACCTCAA



gi|164319981|gb|ES836167.1|ES836167 UFL_017_13 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
.|| |||||||. |.|||||
GCTGCACAAACTGCTTTGAG

EST sequence (targeted fragment marked with yellow):
GGCACGAGCAAATTCCAAAACCCGCGATATTCGGATTTCAAAGGCTCGCCCCAATGAGCTTTCATGGCGTCCAAATCGTCTAAGAAGAAGCCTAACAGCAAGCGATCAAACTCCAAGCCCGCCTACTCCCCGATGGCATCTCCGAAGCATTTCCATCTCAAAAGATTCTTCATTTTAATTGGGATTATGTTGCCTGTTTGTGTAATTGTTGTTTTGGGAGTTTCGTCAAACACGTCGTATAAGATATCGTCGGATCATCACTCCGTTAAGATTTACGGATTTGAATTAGTCAACGAATTCCCCCACGATCCCCGTGCTTTCACTCAGGGCCTTGTTTATGCTGGAAATGAATCCTTATATGAGTCAACTGGACTTTACAAGCAGTCAACGGTTCGCAGAGTAGCTATTCAGACGGGAAAGGTTGAGGTTCTTCACAAGATGCCTGATTCATTTTTTGGAGAGGGTTTAACCCTTCTCGGTGAAAGGCTGTTCCAAGTAACTTGGTTGACAAAAATTGGTTTCATCTATGACACAAAAAATTTGCAGAAATTAGATCGATTTACACATCAGATGGAAGATGGCTGGGGGCCTAGCAACTGATGGCAAAATCTTATATGGGAAGTGATGGGACTTCGACACTGTATCAGATAGATCCTCAAACTTAAAAAGCCACAAAAAAGCAAGTCA



gi|164334354|gb|ES799812.1|ES799812 UFL_504_13 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAA-CTC
|||||||.|||||| || |||
ACTTCACGAACCCCGTTCGAG

EST sequence (targeted fragment marked with yellow):
GGCACGAGGAGATGGAGAGGCAAAGAAGCAAGCAGGTTCGTTTGTTGATGTGGGTTTTGGTTGCTGCCTTGTTCTCCCACAACATGGTCATTGCAGTGACCTCCACTGGCCTTGGAGAGCAGAAAAATTACTATCCAGTTCCTGACCCTCATGCTGGAACTCCCCCTTCAGGTTCACATGGCACACCACCATCTTCAGGAGGTGGAACACCTCCCTCTCATGGAACCCCATCACATGGAGGTGGTTACCACCCTTCACCAACACCATCAACGCCTTCGGGTGGAAATTGTGGAACTCCACCACATGACCCTTCAACTCCATCAACACCATCACACACTCCTTCGCATGGTACTCCACCATCATCTGGAGGTGGTAGTCCCCCATCGTATGGAGGAGGCAGTCCCCCATCGTATGGAGGAGGCAGTCCCCCATCATACGGAGGTGGCAGTCCCCCATCATACGGAGGTGGCAGTCCCCCATCATATGGAGGTGGCAGTCCAACTACTCCTATTGATCCAGGAACTCCAAGCATTCCCTCACCTCCATTCTTTCCTGCTCCAACTCCACCAATTGGTGGTACATGCGATTTCTGGAGGAGTCACCCACACTGATATGGGGTCTGCTTGGTTGGTGGGGCACTGTAGGCAACGCATTTGGCGTGACAAACGTTCCTGGACTTGGAACAAGCATGAGCTTGCCCCAAGCACTTCAAACACACGTACTG



gi|164348188|gb|ES817092.1|ES817092 UFL_280_12 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
|||||.|||||.|.. ||.|
ACTTCGCAAACTCTTCTGGG

EST sequence (targeted fragment marked with yellow):
GGCACGAGGGGAATTGAGGTTAGAGAAGCTGCAACAAGGGTCTTCTCAAACGCTTCAGGATCGTACTCTTCGAACGTCAACCTTGCCGTTGAGAACTCCTCATGGAATGATGAGAAACAGCTCCAAGATATGTACCTGAGCCGGAAATCATTTGCTTTTGACTGTGATGCCCCAGGTGCAGGTATGACTGAGAAAAGGAAAGTCTTTGAGATGGCTCTAAGCACAGCAGATGCCACTTTCCAAAATCTTGATTCCTCAGAAATTTCACTCACTGATGTGAGTCACTACTTCGACTCGGATCCAACAAACTTAGTACAAAACCTCCGCAAGGATGGAAAGAAGCCGAGTGCATACATTGCAGATACCACCACTGCAAACGCCCAGGTTCGAACTCTGGCTGAAACTGTGCGACTAGATGCACGAACCAAGTTGTTGAACCCCAAATGGTATGAAGGAATGATGTCCAGTGGATATGAAGGGGTTCGCGAAATTGAGAAGCGCCTTACAAATACTGTAGGGTGGAGTGCAACTTCGGGGCAAGTGGATAACTGGGTGTACGAAGAGGCTAATTCAACTTTCATTCAAGATGAGAACATGTTGAGCAGGCTGATGAACACCAATCCCAACTCGTTCAGGAAGTTGATTCAAACATTCTTGGAGGCCAACGGACGTGGCTATTGGGAAACTTCGGAGGAGAATATTGAGAAGTTGAGGCAGTTGTATTCAGAAGTCGAAGATAAGATTGAAGGTATTGATCGATGAACCGTAAACCAATAGCTTCTAAATGGCAAATATTTGATGACTTACTTGAGCCCCTCCCTTTAGGATGAGCTGAAACACTCGTGAACTTATGGAAAGTAATTTTGTTTCATAAAAATAAAAAAAAATAAAAACCCTTTGCTTTGTAAAAAAAAAAAAAAA



gi|109867224|gb|DW496200.1|DW496200 GH_TMIRS_004_B12_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

TGAAGTGTTTGGGGGAACTC
||||||..|||...||||.|
ACTTCATGAACTTTCTTGGG

EST sequence (targeted fragment marked with yellow):
GAAAGCCGATTCATTTGTTCAAAATTTCCAGTCTTTGGAATCATAATTTTTCTCTTTATCCCTTTTCTTTTTTTAGATATTTTATTATATTATATATTTAATTTATCAAGGCTAAATGTGAAGAACACGAAAAAGTGCATATACAGTCCACCATTTATTCCTTTTTCAGTGGTCGAAGTGTTTGTATATAAAGAGCTTCTCAATAAGCCATTACTTCAAGGGTTCTTTCAAGTACTTCATCATTATATCATCCAAATTCATCATATTTTTCCCATTTTATTTAGCAATTTAAGAAAACATGAGCAGGCCAGGAGATTGGAACTGCAGGTCATGCCAACACCTCAACTTCCAAAGGAGGGACAACTGCCAACGTTGCGGTGAATCTCGATACGGTATTAGAGTCGGCTCGACATTGGGGTTCACCGCAGGCTCGGACGTTCGACCTGGTGACTGGTATTGCACGGCTGGAAACTGCGGCACCCACAATTTCGCGAGCCGGTCTACTTGCTTCAATTGCGGCGCGTTCAAGGACGAGTCGGCTGGAGGTTTCGACTTCGACATGTCTCAATCAAGAGGGTTCGGAGGTAACCGATCCGGCTGGAAATCAGGGGATTGGATATGTACCAGGTTAGGGTGCAATGAACATAATTTTGCTAGCAGAATGGAATGCTTCAGATGCAGTGCTCCAAGAGAATTCAACAATAGAACTTCATATTAAATCACATGCATGCTACTATATCCATTTTTGGGTGTTTTGAGGGCATTAATAGGAGATTATAATGAGAGAGT



gi|164311120|gb|ES798558.1|ES798558 UFL_495_91 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
.|||| ||||||||.|| ||
GCTTCTCAAACCCCTTTAAG

EST sequence (targeted fragment marked with yellow):
GGCACGAGTTTATTCAAAAAAAGATATCCATGGCAGAGACAGCAATCAACTCTAAACCTAAAAACTCAAGATGGTTTCTCAATGGAATGACTGCCCTTGTCACCGGTGGCACTCGAGGAATTGGGCATGCTATAGTGGAAGAACTTGCAGGGCTTGGGGCTTCTGTTTACACATGTTCAAGGAATGGAGATGAGTTGAATAAGTGTTTGAAAGAATGGGAAAGCAAAGGGTTTTTGGTTAATGGGTCAGTTTGTGATGCCTCGTCTAAAGACCAAAGGCTGAAACTGATAGACAACGTTGCCTCTGTTTTCAATGGGAAGCTTAACATTCTTGTCAATAATGTGGGAACAAACATCAGGAAGCCAACAGTTGAGTACACCGCGGAAGAATATTCGAAGCTGATGTCAACAAACTTCGAATCTTCATACCATTTCTGCCAACTTGCGCATCCACTTCTAAAAGCATCTGGAAAAGGCAGCATTGTGTTTATTTCGTCTGTTGCAGGTTTAACCCATGTTGGCAGTGGATCCATTTATGCACCAACTAAAGCTGCTATTAATCAGCTCACAAAAAGCTTGGCCTGTGAATGGGCAAAGGATAATATCAGGACCAACTGTGTTGCTCCCTGGTACATCAGAACCTCACTTGTTGAACGTTTGCTTGAAAAGAAAGAATTTATGGAAAAAGTAATATCTCGAACGCCACTTGAACGGATTGGAGAACCAGAAGAAGTGTCATCAATGGTAGCATATCTTTGCCTTCCGGCTGCTTCTTACATCACTGGACAGATCGTTTCTGTGGATGGAGGATTTACAGGGAATGGCTTCATCCTTCAGTTGATCTTTATCATAGTTTCTAATGCTAATACATAAATGTTGGGACAAAACTACTATACTAAAAAATGGAGTGAGGGTATGATCTCGTATTTGATTTTATTTTCCCTTTCTTTTTGGTTTTGCCGAGTTCTCCCTCTCAACTCTCTGGACTGTGTTGGGTTTCTATGGGGGGATTTTGGGGATTGGGGGGGTTTTTTTGGCATTGTTTCCTTTTAAATATATTTTACAGGCTTTTTTTGCGGTTTAAATGGGGCAAAAAATTTTTGCTGTGAATTTCCCCAAACTCTTCGAAAAAAGAAAAAAAAAAAAAAAAAGAAAAAAAAAGACTCCCGAGAAGAAAACTTCTTGAGAGGGGGCGCCCGGCGGGGGCCCCACCTCCGTATTTTTCCCCCGCCCGGCGGG



gi|193218960|gb|EY197232.1|EY197232 UFL_511_D10 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA sequ

TGAAGTGTTTGGGGGAACTC
|.|||||.||| |.||| ||
ATTTCACGAACACTCTTCAG

EST sequence (targeted fragment marked with yellow):
AAAATTAAGGGAGCTCGCGCGCCNTGCAGNNGTCGACACTAGTGGNATCCAAGAATTCGGCACGAGAAAAGGTTAAGTTCCCCTTGCCAAGTACGGTCAACGTGTCAAATATCTGCTAGTCCCCTACCTGTTTGATAAAAGATCTGAAAGAATCAGTATGGAAGGGCAAAGGCCCAGTGTTGGTAATGGTATCATTGGGAGATGGAAGACTGCTTGGGCTTCAAGAAACAGCGTGAAAACTTTTACAATAGCAGCTTTCTTTGCCGTCGCTTTCTCTCTTTTCATACTGAGTGGAAGGCAAAGGAATCTCGGTGGATCCGGTACTTGTGATTTTCCTGCTGTATTCAACTTTGGGGATTCCAATTCTGATACGGGTGGAAAGTCTGCTGCTTTCCACCGAATTCCTTTGCCTAATGGCAATACTTTCTTCCAAAAGCCATCTGGGAGATATTGGAATGGAGAACTTATTATTGATTTTATAGCTGAGAAACTGGGACTGCCACATTTGAGTGCGTATCTGGACTCAATTGGTACAAATTTTCGACATGGAGCTAATTTTGCTACGGGAGGGTCTACAATTCAACGACTTGATGCTAGAATGTTTAAGATAGGGTATAGCCCCATCTCTCTTGACATACAACTATCACAGTTTGAGCAGTTCAAAGAGCGAATAAATGAGCTATATAAAGAAGGTGTGAATTCAAACATTAAAAGCAAGCTTCCAAGACCAGAGGACTTCTCACAAGCACTTTACACATTTGATATTGGGCAAAATGATCTTGATTGTGCATTCAAGTCAATGACAGAGAAACAGGCTATAGAATCAGTTCCAGGAATTATTAACCAGTTTGCTCAGGCTGTTAAGCGGCTACATAATCAAGGGGCAAGAACATTTTGGATACANCACACAGGTCCAATAGGCTGTTTGCCCTTTGAGGTTCTGGATTATC



gi|164286194|gb|ES834732.1|ES834732 UFL_248_77 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
|||||| |||||||.| |.|
ACTTCAAAAACCCCTTAGGG

EST sequence (targeted fragment marked with yellow):
GGCACGAGCTCGAGTTTTTTTTTTTTTTTTTTTTATGAACTAAAAATCACATTTTTACCATGTTAAGATGGAATGCTCTCCAAACTTCAGTCAGTACTTTCTAGCAGATACTATAGGGATTCCCCAAAAACTTCAGTAAGTTCCTTTCATCCTTTTCACTAAAAACTTCACCTCCAACCCTAGGACACAAACACAAGTAATTCTAAATACAGAGCAGCCTCTTCCTTTTCTTTTTCCTTTTCGGCAGACACTATTCTTTTTTTTCTTAGCATAAGGTTGCTGAATTTCTCCATTAAAGAGGGATATGATCGGTGTGGAGATCCTCGGAGTTCATGGACAATATACAGAGACCATGGGGAAGAAGAAAGTAGGTAGCCAAGAATACAAGGACTCCAAGATCAGCTTCTTCGCCAACTGCTGGCCGTCGAGGATTAGCCCAGTATATTTGGCTTGCACACCAGAAAGAATACAGGCTTGCTATGATCATAATAAGTTTCATTGATTGGTATGATCTCGTGCCGAATTCGGCACGAGAAAGAATCTACTTCAAGCCCATCCGAACTCCTATGCACTGGTTATCAGCATGGAGAACATCACCTTGAACTGGTACTTCGGAAATGATCGCTCAAAACTTGTNTCAAACTGCTTATTCAGGATGGGAGGGGCGGCNATACTGCTCTCTAAACAACGCTCTG



gi|109882210|gb|DW511180.1|DW511180 GH_TMIRS_150_G09_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

TGAAGTGTTTGGGGGAACTC
||||||..|||...||||.|
ACTTCATGAACTTTCTTGGG

EST sequence (targeted fragment marked with yellow):
AAGGGTTCTTTCAAGTACTTCATCATTATATCATCCAAATTCAGCATATTTTTCCCATTTTATTTAGCAATTTAAGAAAACATGAGCAGGCCAGGAGATTGGAACTGCAGGTCATGCCAACACCTCAACTTCCAAAGGAGGGACAACTGCCAACGTTGCGGTGAATCTCGATACGGTGTTAGAGTCGGCTCGACATTCGGGTTTACCGCAGGCTCGGACGTTCGACCTGGTGACTGGTATTGCACGACTGGAAACTGCGGCACCCACAATTTCGCCAGCCGGTCTACTTGTTTCAATTGCGGCGCGTTCAAGGACGAGTCGGCTGGGGGTTTCGACTTGGACACGTCTCGATCAAGAGGGTTCGGAGGTAACCGATCCGGCTGGAAATCAGGGGATTGGATATGTACCTGGTTAGGATGCAATGAACATAATTTTGCTAGCAGAATGGAATGCTTCAGATGCAGTGCTCCAAGAGAATTCAACAATAGAACTTCATATTAAATCACATGCATGCTACTATATCCATTTTTGGGTGTTTTGAGGCAATTAATAGGAGATTATAATGAGAGAATGTTACTGGCTTTGATGAGGAACACCACAAGCATTTTGTCATGTTTCTTTGATAAGATTCATGGCAATGTAGTACTTTTTCTTGTGATGATTATTTATGGTTTCAATTCTATGGTTTTATTGTCTTTTATTTTAGAGAGTTTTATTTATATTTTTGTAATGGTGCTTTGGCTTTATTAAAA



gi|164253526|gb|ES814314.1|ES814314 UFL_301_43 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
||||| ||||||.|||||||
ACTTCTCAAACCTCCTTGAG

EST sequence (targeted fragment marked with yellow):
GGCACGAGTTTTGATTCACCGATCAAAGCTCTTAACAATGGCTTCCACCATCTTCATTCAAACTCCGTTTCAATCCAAATCTTTGAACAAATCCTTGAATACCCATTTTGTTCCTTCCTTTAAACTCCCTGTTTCCCTCTCTTTCAAACCCCGGACCGCTGCCTTCTCCAAACGCGTCCATATCCGAGCTGGTTTGATCGAACCGGACGGTGGGAAACTTGTCGACCTCCACGTGTCGAAACCGGAGCGGGAGTTGAAGAAGCGGGAAGCGGCTTCGTTGCCCAAGGTGAAGCTTACTCCGATCGACGTGCAATGGGTTCACGTTTTGAGTGAAGGCTGGGCTAGCCCGTTAACCGGGTTTATGAGGGAATCTGAGTTCCTCCAAACTCTTCATTTTAACTCGCTCCGGCTCGACGATGGTTCCTTCGTCAATATGTCGGTCCCGATTGTATTGGCTATCGACGATTTGCAAAAAGCGAGTATCGGTGAGTCCAACAGAGTCGCTCTCCTTGACTCGGATGATAAACTCATCGCCATCCTCACCGACATTGAGATTTACAAGCACCCTAAGGAAGAAAGGATAGCAAGGACTTGGGGGACTACAGCCCCTGGTTTACCATACGTTGAAGAAACAATAACAAATGCTGGAAATTGGTTGATTGGAGGCGACTTGGAGGTTATAGCTCCGATCAAGTACAACGACGGTCTCGATCGGTTTCGGTTGTCTCCGGTGGAACTCCGTAAAGAGTTTGAGAGGCGCAATGCCGATGCCGTGTTTGCTTTCCAGCTTCGGAATCCTGTTCATAATGGTCACGCTTTGTTGATGACCGATACTCGTCGGCGGCTTCTCGAGATGGGTTATAAGAATCCCATTCTTTTGCTTCATCCATTGGGAGGTTACACT



gi|78347294|gb|DT567568.1|DT567568 EST1078208 GH_TMO Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
|||||||||||||||||||
ACTTCACAAACCCCCTTGAA

EST sequence (targeted fragment marked with yellow):
CTCTGTTTGTGCGAAGCATCGTTATTTCCGTTATTAGGAATTTCAACTCCTCGGGAAAAGTTCCCCCAAACACTTCAAAAAATTTCCCTTTTAGGGTTTCAATGGATTTATTTCATACTAAATCGGGTCTGTCCCTGGGTTTTACTAAATCCTCCATTGCGGATGATCCGATTTCGCTTCAAATGGACACCACCTTTCGCTTCTCCGTCTCACCCGTTCCGTTACAGTTGTTCGAGGAAAAAGACGACGGTCACCGTGAAAATCGCATCGAAAGTGATGAAGAAATTAGGATTTGGGGGCAGTCTATGTGTGTGAAAAGACAAAGGGATCCTAAACCTCTTCCAAATCCTTGTAAACGGTTTGCTCCCGACCCTGGTCTGGACCAAAGACGAGCCGCGGTCAGGTCGTGGGGAAACCAACGGCTACAAGAGGCCGATCCTGAATTGAGTGAGATCATGAGCAAGGAAAAGCAGAGGCAATTCTTAGGAATTGAGCTTATTGCTTCTGAAAACTTTGTGTGCCGAGCTGTGATGGAAGCTTTGGGAAGCCATTTAACAAACAAATACTCCGAAGGAATGCCTGGAGCGAGGTACTACACGGGCAATCATTTTATTGATCAAATCGAAAGCCTATGTCAAGATCGTGCACTGGCAGCTTTTAATCTTGATTCCGACAAATGGGGAGTCAATGTGCAGCCTTATTCGTGTACTTCTGCAAATTTCGCCGTTTATACGGCACTTTTGTTGCCTGGTGATCGGATGATGGGATTGGATTCGCCATCTGGAGGGCATATGAGCCATGGATGGTATATGCCGAGTGGGAAGAAAGTGTCTGCTGCGTCGATATTCTTTGAGAGTTTTCCTTACAAGTGATCCTCAAAC



gi|5047177|gb|AI728325.1|AI728325 BNLGHi10468 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to MITOCHONDRIAL IMPORT IN

TGAAGTGTTTGGGGGAACTC
||||||||||||.|.| |.
ACTTCACAAACCTCTTAGGC

EST sequence (targeted fragment marked with yellow):
GGGGAAAAGGAACTCATANTAGTTTTTGGACAAAAATGGCTACTTCGGATTCTCCAAACACTTCAGCTGGATCTGATATTGAAACAAACCCTAATCCTAATTCTTCAAAAGCCATAATCCTAACACCATCCAATTCCAATTCCCCTGCCGTATGCCTCTTCCAATTCGCAGGAGACTCCGCCGCCGGTGCCTTCATGGGCTCCATCTTTGGCTACGGGTCAGGATTGATTAAAAAGAAAGGCTTTAAAGGATCCTTTGTGGAGGCAGGATCTTACNCCAAGACATTTGCAGTTTTGTCCGGCGTTCACAGTTTGGTTGTTTGCTTTTTGAAGAGGCTTCGGGGAAAAGATGATGTTATTAATGCCGGTGTANCCGGATGCTGCACTGGACTTGCTCTAAGTTTCCCANGTGCACCTCAGGCACTTCTACAGAGCTGTCTCAACTTTGGGGGCATCTCATTTATCATCNAAAGGCTTAACAAGCANCAACCANCATTGGCACATTCATTTTCTGCGAGAAACAAGAGTGCACACCACAAGGGACCTCGTCCTTTAGCACTACCCCTTTCTATCCCTATTCCGGATGAGCTGAAAGGAGCTTTTTCTTCGTTCTGCAAGTCCTTGGTANAACCAAATAAAGGTAGGTT



gi|109851749|gb|DW480728.1|DW480728 GH_RMIRS_027_A03_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq

TGAAGTGTTTGGGGGAACTC
| ||||||||||..|||.|
TCGTCACAAACCCTTTTGGG

EST sequence (targeted fragment marked with yellow):
ATCAGGCAGAGGACGAGACAAAGAAGGAGAGAAACCATGAGAATTAGAATGGTGACATTTGAGAGGGATGGGTTTTCCCAAACACTGCTGAACACCCTTTAACTGCAGAATAATCACGTCGTCATTCCCTTCCTGAAATTTTCCTTTCCTTTCTTGAAAAAAGACCTATTTTCCTCATGTTCCACCTGCACCACCTCTCATTGCCTTTAGACTTTTAACTACAGCAATACATGATTTGTCTCCAGAATGCCCCAGGAAACCAATCACAAAGTCAAATCCAAGAGAACATTATAAAATTTTGCTAATTTATCTATTGCTATATAACATACCACCCCAAAACTTATTGGCTTGAATAAAATAAATAAAAATTTTATCTAGCTCACGAGTTCATCTTATCAATTTGGGCTGAGAAGAGCTGGGTCATCTTTCTGGTCTGGGCCAGGATCAGCTATTCGTGGCTGGATATGCTTACATTCTGGGTCCTTAGCTGGCATGGCTGGGATGGCAATGGATTCAAACACTCTCTTTTTCCAAAAGGCTAGCATGGGTATGTTCGCATGGTAATGGAATGTTTCCCAGTGAGAGCAGAAGCTGCCACT



gi|109871518|gb|DW500494.1|DW500494 GH_TMIRS_047_B04_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

TGAAGTGTTTGGGGGAACTC
||||||..|||...||||.|
ACTTCATGAACTTTCTTGGG

EST sequence (targeted fragment marked with yellow):
AAGGGTTCTTTCAAGTACTTCATCATTATATCATCCAAATTCAGCATATTTTTCCCATTTTATTTAGCAATTTAAGAAAACATGAGCAGGCCAGGAGATTGGAACTGCAGGTCATGCCAACACCTCAACTTCCAAAGGAGGGACAACTGCCAACGTTGCGGTGAATCTCGATACGGTGTTAGAGTCGGCTCGACATTCGGGTTTACCGCAGGCTCGGACGTTCGACCTGGTGACTGGTATTGCACGGCTGGAAACTGCGGCACCCACAATTTCGCCAGCCGGTCTACTTGTTTCAATTGCGGCGCGTTCAAGGACGAGTCGGCTGGAGGTTTCGACTTGGACATGTCTCGATCAAGAGGGTTCGGAGGTAACCGATCCGGCTGGAAATCAGGGGATTGGATATGTACCAGGTTAGGGTGCAATGAACATAATTTTGCTAGCAGAATGGAATGCTTCAGATGCAGTGCTCCAAGAGAATTCAACAATAGAACTTCATATTAAATCACATGCATGCTACTATATCCATTTTTGGGTGTTTGGAGGCAATTAATAGGAGATTATAATGAGAGAATGTTACTGGCTTTGATGATGAACACCACAAGCATTTTGTCATGTTTCTTTGATAAGATTCATGGCAATGTAGTACTTTTTCTTGTGATGATTATTTATGGTTTCAATTCTATGGTTTTATTGTCTTTTATTTTAGAGAGTTTTATTTATATTTTTGTAATGGTGCTTTGGCTTTATTAAAAGAAGATGATTCTCTTCG



gi|164360881|gb|ES851395.1|ES851395 UFL_688_23 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
.||||||..||.| .|||||
GCTTCACGGACTCGTTTGAG

EST sequence (targeted fragment marked with yellow):
GGCACGAGGTTGATGGAAAGGATAGCCGAGAAGATCCAAGGTCATGATTCGTCGTCATCGGATTCCGATAATGACAAGCCATCGGAATCATCGATCAAGGCCAAGGTCTTCCGTCTTTTTGGAAGAGAAAAGCCCGTTCACCACGTTCTCGGTGGAGGCAAACCGGCTGACATTTTCCTTTGGAGGAACAAAAAGATATCGGCAGGAGCGCTCGGTGTCGCAACTGTGATATGGATTTTGTTTGAAATGCTCGAATACCACCTTCTCACACTAGTGTGTCATTTGTTGATACTTGCTCTTGCAGTACTGTTCTTGTGGTCAAATGCTGCTACCTTCATTAACAAGTCTCCACCACGCATCCCTGAAGTTCAAATTCCTAAGGACCCAGTTATGGAGTTTGCTCAGGCACTTCGGTTTGAGATCAACCGGGCTTTTGCTGTCCTACGGGATATTGCATCAGGAAGAGAACTCAAGAAGTTCCTATCTGTATGTGGTTTACTTGTACCGAGTAGTTATCTTTTCTGTTTGATCACTTGCAGATTATTCATCTGATTTGCAATTAAGATAGTGATACAATAGTTACTTAGTTTGCTTTGTTCTGATCATTTTATTCATATGAAGACTTTTTTTGAGCTATGCTATCATGCATTTGACAATCATATTGGAACCGGACTCTGATTGTTTAGGTGATCGCCGGCTTATGGGTCTTGTCTATTGTCGGAAGTTGGTGCAACTTCTTAACAC



gi|109879093|gb|DW508063.1|DW508063 GH_TMIRS_120_D11_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

TGAAGTGTTTGGGGGAACTC
||||.||||||..||| |||
ACTTTACAAACTTCCT-GAG

EST sequence (targeted fragment marked with yellow):
CCATGAAGATTCAGCATCCAAATCCACAGCTCCAAGCTGCCAAAATCCTGGGGAGAACCAGAAAGTTTCATTAATGTCCATTTCCACTGCTTCAACGTCTCCCCTTGCAGGAAATGCACACCAGCAGTCGCGTTTCTCCCTCATTGGATCATCCGAATTAGAAGGGATCACCCAAGGAAGTCCAAAGAAACCAAGGAGCAATGAACTGTTGCAGTCCCCAACTAGTGTCCCATCCATGAACATGGACATGAATCAAAGTGAGGCAAGCAATGACGTTTCCATGAAGTTCAGCAAAGATGGGTACTCATTCATGGGGACCAACACCGATTTCATGGGAGGTTTAGGGCAGTATCCTATCGGAGAAATCGGACGGTTCGATGCAGAACAGTTCGCTCCTAGGTTTCCTGGTAATGGTGTTTCCCTCACACTCGGTCTTCCGCACTGTGAAAACCTTTCCTTATCTGGAACCCATCAGAACTTTCTCCCAAACCAAACAATGCAAATGGGGAGAAGGCTAGACATTGATGAACCAAATGAGTTTGGTGCCATAAACCCTCCCACACCTCATTCTTCGGCTGCGTATGAGAGCATCAACCTTCAGAACAGAAAAAGGTTTGTAGCCCAATTATTACCTGACTTCGTCGCCTGAAGAACGTGATTCGAACCAGACAAACATATATCTTTCACTATTTTCATTTCTATCCATTAGGGAACAAGGGAAATGCATGGTATAGTGTAAAGAAGAAATTTCTCCTAGTATAGGCTTTATACTTTGCATAGCACAATTTGAGTCCTTCAAACATTTCAGGATCTCGCCATATATATTTTAGAGGATTGTATATTAATTTTATAAGTTT



gi|164282564|gb|ES832353.1|ES832353 UFL_364_75 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
|||||.|||||.|.. ||.|
ACTTCGCAAACTCTTCTGGG

EST sequence (targeted fragment marked with yellow):
GGCACGAGAGTCAACAGAGTTGAGCCAGTCAGCCTTGAAGAGCTTGGCAGACCCAGGATTGATGTTGTTGTTAACTGCTCTGGAGTTTTCAGAGATTTATTCATTAATCAGATGAACCTCCTTGATCGGGCAGTGAAGATGGTAGCTGAATTAGATGAACCTGTGGAGCAGAACTATGTACGTAAGCACGCCTTAGAGCAAGCCAAAGCCTTGGGAATTGAGGTTAGAGAAGCTGCAACAAGGGTCTTCTCAAACGCTTCAGGATCGTACTCTTCGAACGTCAACCTTGCCGTTGAGAACTCCTCATGGAATGATGAGAAACAGCTCCAAGATATGTACCTGAGCCGGAAATCATTTGCTTTTGACTGTGATGCCCCAGGTGCAGGTATGACTGAGAAAAGGAAAGTCTTTGAGATGGCTCTAAGCACAGCAGATGCCACTTTCCAAAATCTTGATTCCTCAGAAATTTCACTCACTGATGTGAGTCACTACTTCGACTCGGATCCAACAAACTTAGTACAAAACCTCCGCAAGGATGGAAAGAAGCCGAGTGCATACATTGCAGATACCACCACTGCAAACGCCCAGGTTCGAACTCTGGCTGAAACTGTGCGACTAGATGCACGAACCAAGTTGTTGAACCCCAAATGGTATGAAGGAATGATGTCCAGTGGATATGAAGGGGTTCGCGAAATTGAGAAGCGCCTTACAAATACTGTAGGGTGGAGTGCAACTTCGGGGCAAGTGGATAACTGGGTGTACGAAGAGGCTAATTCAACTTTCATTCAAGATGAGAACATGTTGAGCAGGCTGATGAACACCAATCCCAACTCGTTCAGGAAGTTGATTCAAACATTCTTGGAGGCCCACGGACGTGGCTATTGGGAAAACTCGGAGGAGAATATGGAGAAAGTGAAGCAGTTGTATTCAGAAGTCGAAGAATAGATTGGAGGGTATGGATTGATGAAACCGTAAAACAAAATAGCTTCCTAAAATGGGCAAAATATTTGATGGACTTACTTGGAGCCCCCTCCCTTTTAGGATGAACCTGGAAACCCTCCGGGAAACTTATGGGAATGGTATTTTTGGTTCAATAAAAAATAAAAAAAAAAAAAAAAAACCCCTTTGGGTTTTTTAAATTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGAAGAAGAATTTTTCTTTAGAGGGGGGCCCCGGGGGGGGCCCCCCTCCCATTTTTTTTTCCCCCCGCGCGGGGGGGGGGGGG



gi|109859734|gb|DW488713.1|DW488713 GH_RMIRS_071_A10_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq

TGAAGTGTTTGGGGGAACTC
||||| ||||||.|||||||
ACTTCTCAAACCTCCTTGAG

EST sequence (targeted fragment marked with yellow):
ATATTCATAGAGAACACAACGCCTTTGTCTCGTCTCTCTCACGGTTCCTCGACCAAATCAAGCTACCAAAGGCCAGGCTATAAACAGTACACCCCAACGTTGAGTGTTTTATTTTTTGATTCACCGATCAAAGCTCTTAACAATGTCTTCCACCATCTTCATTCAAACTCCGTTTCAATTCAAATCTTTGAACAAATCCTTGAATACCCATTTTGTTCCTTCCTTTAAACTCCCTGTTTCCCTCTCTTTCAAACCCCGGACCGCTGCCTTCTCCAAACGCGTCCATATCCGAGCTGGTTTGATCGAACCGGACGGTGGGAAACTCGTCGACCTCCACGTGTCGGAACCGGAGCGGGAGTTGAAGAAGCGGGAAGCGGCTTCGTTGCCCAAGGTGAAGCTTACTCCGATCGACGTGCAATGGGTTCACGTTTTGAGTGAAGGCTGGGCTAGCCCGCTAACCGGGTTCATGAGGGAATCTGAGTTCCTCCAAACTCTTCATTTTAACTCGCTCCGGCTCGACGGTGGTTCCTTCGTCAATATGTCGGTCCCGATTATATTGGCTATCGACGATTTGCAAAAAGCGAGTATCGGTGAGTCCGACAGAGTCGCTCTCCTTGACTCGGATGATAAACTCATCGCCATCCTCACCGACATTGAGATTTACAAGCACCCCTTGTCTCGTCCTCTGCCTGATG



gi|109828311|gb|DW226935.1|DW226935 GH_HYPT_01-01-27R_G08_InvR_29Apr04_052_F Stem - 3 weeks after planting Gossypium hirsutum cD

TGAAGTGTTTGGGGGAACTC
||||.||||||..||| |||
ACTTTACAAACTTCCT-GAG

EST sequence (targeted fragment marked with yellow):
AAGTGAGGCAAGCAATGAGGTTTCCATGAAGTTCAGCAAAGATGGGTACTCATTCATGGGGACCAACACCGATTTCATGGGAGGTTTCGGGCAGTATCCTATCGGAGAAATCGGACGGTTCGATGCAGAACAGTTCGCTCCAAGGTTTCCTGGTAATGGTGTTTCCCTCACACTCGGTCTTCCGCACTGTGAAAACCTTTCCTTATCTGGATCCCATCAGAATTTGATCCCAAACCAAACAATGCAAATGGGGAGAAGGCTAGACATTGATGAACCAAATGAGTTTGGTGCCATAAACCTTCCCACACCTCACTCTTCGGCTGCGTATGAGAGCATCAACCTTCATAACAGAAAAAGGTTTGTAGCCCAATTATTACCGGACTTCGTCGCCTGAAGAACGTGATTCGAACCAGACAAACATATATATCTTTCACTATTTTCATTTCTATCCATTAGGGAACAAGGGAAATGCATGGTATAGTGTAAAGAAGAAATTTCTCCTAGTATAGGCTTTATACTTTGCATAGCGCAATTTGAGTCCTTCAAACATTTCAGGATCTCACCATATATATTTGAGAGGATTGTATATTAATTTTCTAAGTTTTGGGGATTGGTTTAGATGGATCGATATCATCAAATTAGTTTCTTTGGGAATAATGACATTAAAATTTTC



gi|109850173|gb|DW479152.1|DW479152 GH_RMIRS_018_B04_030_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA

TGAAGTGTTTGGGGGAA-CTC
|||||||||||||.||| |||
ACTTCACAAACCCTCTTTGAG

EST sequence (targeted fragment marked with yellow):
AATTGGTTACTCCAATTTTTGGTCTGGTTTTGGTTCCAAGAATCAGGGAAGTGGTTCCTTATTTCCGTTGGAATTGGTTTAGGAAGTGGAGCCCTTGGTTTTGGTGGTTTTACGCTTACCCTTAAGGGCCGTAAGCTGGTATTCCCCTACTCCCTCAAAGAGTTTCTCCCAAACACTTCATTTTTTTATTTTAATTTTAATAGTTGCCTTTTTAAGGGTTTGAATGGATTTATCTCAGGCTCAATCGGGTTTGCCTTTGGGTTTTGCTAAAAATTCCATTGCAGACGATTCGATTTCGCTTCAAATCGATACCAGCTTTCGCTGCTCGTCGAACCCGGTGCGGCCCGTTCCTTTACAGTTCTTCGAGGAAAAAGACGACGGTGCCCCTCGTTTGGAGAACGGCAAGCACAAAGACCACAACAACGAAGATGAAGAAATTAGGATTCTAGGGCGATCTATGTGCGTGAAAAGACAAAGGGATCCTAAACCTGTTTCGAACCCTTGTAAACTGTTATGTTCCGAGCCAAGTTTTGACCAAAGACGAGCCGCTGTCCGGTCATGGGGAAACCAACCGCTAGAAGAGGCGGATCCAGAATTGAATGAAATCATGAATAAGGAAAAACAAAGGCAGTTCTTGGGAATTGAGCTTATTGCTTCCGAAAACTTTGTGTGCCGAGCTGCGATGGAAGCATTGGGAAAGCATTTAACGAACAAGCACTCCGAAGGGATGCCTGGCGCCAGGTACTATACGGGCAACCACTTTATAG



gi|164295595|gb|ES812930.1|ES812930 UFL_209_40 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
|||||| ||||||| ||.|
CCTTCACCAACCCCCCTGGG

EST sequence (targeted fragment marked with yellow):
GGCACGAGCTTCAGCGAAACTCATTTGATTGCGCAAAAGACAGCCGCTGGTCTATCCAACTTAGGCATTCAAAAGGGAGATGCCATCATGATTCTCCTCCACAACTGTGCCGAATTCGTCTTCGCCTTCATGGGAGCTTCCATGATAGGAGCCGTTTCTACCACCGCCAACCCGTTTTACACCTCCAAAGAAATCTTCAAGCAATTCAAAGCTGCTCGAGCCAAACTCATCATCACTCAATCCCAATACGTTGACAAGCTTAAAGACACCAATAACAACGACGGCGACGAAAACTTCCCCAAAATAGGTGAAGATTTCAAGGTGATCACCATCGACGACCCCCCAGAAAACTGTTTAGATTTCAGTATGTTATCAGAGGCAAATGAGAATGAGATCCCTCAAGTTACCATTCACCCCGATGACCCTGTTGCTTTGCCCTTCTCTTCGGGAACAACAGGGTTACCCAAAGGAGTCGTTTTAACGCACAAAAGCTTGATTACAAGCGTCGCTCAGCAAGTAGATGGAGAGAACCCAAATCTTTATTTGACACATGACGATGTTGTCTTGTGTGTTTTGCCTTTATTCCACATTTACTCACTCAACAGCGTGCTCTTGTGTTCCTTGAGGGCTGGAGCTGCGGTTCTGTTAATGCAGAAGTTTGAGATAGGGACGTTATTGGAGCTGATACAGAGGCATAAAGTTTCGGTGGCTGCGGTGGTGCCGCCGTTGGTGGTGTTGTTGGCTAAGAATCCTGTGGTCGCCCAGTTTGATTTAAGCTCAATCAGGGTGGTGCTTTCAGGGGCCGCCCCGCTCGGAAAAGAGCTCGAAGACGCTCTCAGGGGAAGGGTCCTCAAGCCGTTTTGGGTCAGGGATATGAATGACAGAGGCAGGAACAGTTCTATCAATGGTGCTGGGGTTTTGCGAAACACCCCCTTCCTACAAAGTCAGGTTCATGTGGGACAGTTGGTTAGGATGCAAAGCTTTAGGTCATTGAACCCTGAAATGGGCTGCTCCCTTGGCTACAATCAACCCTGAAAAGATTTGCATTTCTGGAATCTCTAATCATGGAAAGGGTACTTGGAAAGAAGGGGGGTCCCCCCAACCACTTCCCAAAAAAAGTGGGAGGGGTGGGTTTTCCAACCGGGGGAAAAATAGTTTCTTTGGAAAAAAAAAAAAAAGAAGATTTTTATTTTTGTGAAAAAAAA



gi|164359647|gb|ES804771.1|ES804771 UFL_645_75 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TGAAGTGTTTGGGGGAACTC
||||||||||||.|.| |.
ACTTCACAAACCTCTTAGGC

EST sequence (targeted fragment marked with yellow):
GGCACGAGGTCGAGAAAGGGGGAAAAGGAACTCATAGTAGTTTTTGGACAAAAATGGCTACTTCGGATTCTCCAAACACTTCAGCTGGATCTGATATTGAAACAAACCCTAATCCTAATTCTTCAAAAGCCATAATCCTAACACCATCCAATTCCAATTCCCCTGCCGTATGCCTCTTCCAATTCGCAGGAGACTCCGCCGCCGGTGCCTTCATGGGCTCCATCTTTGGCTACGGGTCAGGATTGATTAAAAAGAAAGGCTTTAAAGGATCCTTTGTGGAGGCAGGATCTTACGCCAAGACATTTGCAGTTTTGTCCGGCGTTCACAGTTTGGTTGTTTGCTTTTTGAAGAGGCTTCGGGGAAAAGATGATGTTATTAATGCCGGTGTAGCCGGATGCTGCACTGGACTTGCTCTAAGTTTCCCAGGTGCACCTCAGGCACTTCTACAGAGCTGTCTCACCTTTGGGGCATTCTCATTTATCATCGAAGGGCTTAACAAGCAGCAGCCAGCATTGGCACATTCATTTTCTGCGAGAAACAAGAGTGCACACCACAAGGGACCTCGTCCTTTAGCACTACCCCTTTCTATCCCTATTCCGGATGAGCTGAAAGGAGCTTTTTCTTCGTTCTGCAAGTCCTTGGTAAAACCAAATAAAGGTAGGTTTCCTACAGGTAACTAAGTAGTAGGTGGACCATTTTTCATTTTTCCTGTTGTTTGTAGAATTTTGCAAGTGTTGAGAATGTAGACTGAAAGTTTTGTCTGAGATTTGAAGCTTTTTACAAGCAGAAAGATGAAATTGCTTCTTTTCTTGTGTTGATTCAATTATATTATCTGTCTGGTTCAGTAATAAGAATGAATCAAATTTTGATTAAAAAAAAAAAAAAA



gi|109853025|gb|DW482004.1|DW482004 GH_RMIRS_034_A06_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq

TGAAGTGTTTGGGGGAACTC
|.|||||||||.||.|| ||
ATTTCACAAACTCCTTTAAG

EST sequence (targeted fragment marked with yellow):
CCTCTTCTAACCTCTTGATCACGGCTTCGCCTTCCCCACAACGGTCCATCAACAACGCATTCTCGAACAAAGCTTCGAAAGAGAACGGATTCGACTGAAGAATTTCCTCAAACACTTTACGTGCATTCTCCGTTTGACCCATTTCCCCCAACAGCCTCCCTAACAAGAATTTCCAATCAATAAAATCTGGTTGTGCAGAAACCAATCGGTTCAAGATACTCAGCGCTTCTTCGTCTTCGCCGTTTTCGAGCTTCTGTTGCAAAAGCGACTGTAATGCCGCAATGGCTTCGTCATTAGATCCCAGAAACTCAGACAACGGTGAAGTTTCTTTTGGGCTTTGGGTTTTCACTTGTTCGTTTTCTTGGAGAACTGCAGGTTCTTGTTCAGTCATTGCTGGTAGAGAATCGGCTTTGGCAGGGAAGTTGGAGAATTTCCCGATCATCAAACTTGTGGCACCGACCAAAACAGCGGTTTTGGCAAATGATTGAAGCTTTTGAGAGAGGGATTGGCCATTGTTGTTAGGCTTAGAAACGGGAATGGCATCAAAATTTGCAGAAGAAACCCTAAGCCTGAGGGGTTTGGGCGAAGGAAAAGTGAGGAATGAAGGAGGAGAAAGTGGTTTCAAGGGAAGAAAAGAGAGGGATGGTGATGATAACGTGGCCAGTGTGGGATCCATGGCTTGAGATTATTTAGGGTTGTATTTCAA