| mature miRNA: TGCAAATCCAGTCAAAAGTTA species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|82756758|gb|DV850320.1|DV850320 GH_LSL30F01.f GH_LSL Gossypium hirsutum cDNA clone GH_LSL30F01 5', mRNA sequence TGCAAATCCAGTCAAAAGTTA EST sequence (targeted fragment marked with yellow): GCTAGACCCGCAGTAGACACAAGTTTGGAAGATGAAGAAATAGGTTTAGCTGGTTGGGCTCTCAAGTGTGTAGAAAATGAAACAATAGAGCAAATCATTGACCCTTACTTGCATGGTAAAATTGCAGCAAAGTGTTTAAAAGTATTCGTTGAGATTGCGAAAAGCTGCCTACATGATGTGGGAGTTGAAAGGCCAAAAATGAGAGATGTGGTGGGAATGCTTGAGTTTTCACTGGAATTGCAAGAAGCTGCTGGAGCAAAACAGGCGGTAGAAGCTGGTGATACAATTAATCATGCCCGGACCATGGATGAACTTGTGTAATCTTTTTGGGTCAATTTGGGATCAAATCAATTCCATAAAATCACTAGCGTTAGCTTTCACATTCATGACGTAGTGTTATAATTTATTACAAATTGAGCTGGAGCTTAGGAGTGGTAAGGAAAATGTCTTGCGGGTAAGCTTAAAATGTCAAAGGTCTTCCTCTAAAGACAAATAAATCAAGCTTAATATGTCAAAGGTCTTCCTCTAAAGACAAATAAATCAACACATCTTCTGGAGCTCTGCGTAGGTAGTGATTGATTTCTACACGCTACCGACACCCAACATGGTCCCTTATCAACTATGCATGGAACATCACTGATCACAGGATTAATTNTTTAAGCATC | |||||||||
gi|109865805|gb|DW494781.1|DW494781 GH_RMIRS_104_B08_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TGCAAATCCAGTCAAAAGTTA EST sequence (targeted fragment marked with yellow): CATCTCTGCATATTTAGCTGCAATGAAGCCAAGGGTCAACAAGTTCAAACTGGTTGTTGGTATGAATCAATAAAAAGCTATTCTTATATAGACCAAGAGTAACCATTGAAAATATCATCCATACCATATAACTGTCCTTCATGGCATCCACAAATCGATGCTCACGTATACCAGGAGCAGAATATGTTCCAGTTTGACATCAATTTTACCGCAGCTGTAGTTGTTGTGCTAAAGGAGGCTTCACCTTGAGAGAGTAATTAACAAATACACAGACACACACACACATATACCAAAAAAAGAAGAAACTCACCTGAATTAGTTTTAACACATAATACCTCCCAATATATATCAGATTCGTAAATCTCAGCCCGGTTTAACTTTTGACTGGATTTGCAGGCTCGGGTTTTGTAAACCTTCAACAACGCAGTTCAAGTCGGCAAATCCAGTTCAAAAGACAAGACGCAAACTAAGACAGTAAGACCAGTATTAAAATACTGAGCAGCATCATGAATTGTGAGTATTGACCGCGATTCATTGCTTCGTTTACAACCTACCATCTATATTCTCAGCATAGAGAAAATTTGAAGCAAATTAAAACAATTTATAAAAGAGATTTTGAAATCTTAGAAGGATTTCGAAATATACCTTATTCAATTTCCAGATCTATAGGGAACTTGAAGCCAGAGGCTTGTTTTTTTC | |||||||||
gi|164300098|gb|ES834788.1|ES834788 UFL_002_03 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TGCAAATCCAGTCAAAAGTTA EST sequence (targeted fragment marked with yellow): TGATAATCAGGTGTACGGTGTTGCCCATGGGCTTCTTATGGGTTATAGGGAGAATGTTTGGATCCAGGCTCAATCCCTGTTCGATGAAGTAAAGTCAATGGACTCGTCAACTGCTTCTGCCTTTTATAATGCCCTGACTGACATGCTGTGGCACTTTGGTCAGAAACGGCGAGCCCAACTGGTTGTTCTCGAAGGGAAACGCCGGCAAGTATGGGAGAATGTATGGTCTAATTCTTGCCTAGATTTGCATCTTATGTCATCTGGTGCTGCTCGAGCAATGGTGCATGCATGGTTGCTAAACATACGTTCTGTTGTTTTCGAAGGTCACGAATTGCCGAAACTGTTAAGCATTTTGACAGGTTGGGGCAAACATAGCAAGGTAATTGGTGATGGTGCACTAAAGCGGGCCGTTGAAGCTCTCCTGACTGGCATGGGTGCACCCTTTCAGCTTGCTAAGTGTAACTTAGGTAGATTCATATCTAATGGTCCAGTTGTCGCCGCGTGGTTAAGAGAATCGGGCACCCTAAAGTTACTTGTTCTTCACGATGATAGAACCCATCTCGAAAACACTAGGTTTCAAGAAATCTCAAATTTACAGACAATCCCATTGTAGCAGTGTGTATAAAGAAAGAACCATTCAAGTCGTACATACCATGATTGGCATACATTTATCTCTTTTTCTCATGCTTTTGAACTGCAGCTCTGCATTTAGTACTTACGCTTAGTACTTGAAAAAGGTGTAAAGAATGGCTAAAGCTAAACTGCAACAAACTGGAGATAACATACAATCAAAACCTAGCAGAAAATATGGAGCTGGTGTTGATGCTCGGTTTTGCTAACGAGTATGTGAGGCCGTTAATTTCACGAAGAACACGTACAAAATCCATATCCTCGATTTAGCCGACCAGTCGAATGAAAGCCCATCGTCTTTGGTTCAAGGGTAAGTCATGCAGGGTGCAGGTATTCATATTTAGCCCCCTCTTTAAGAGTCTTTGAAACAAGGCAAGCACCAACAAAAACTTAACAGCACCCCTATAATATTACTTTGAGTTAATGGAGAAAAACAAATGTATAATTTAAAGGTTCGGGGTATTTACCCACCCAAATTTAAAAAGGGGCTAAAAATTTAGGGAATTAAAAAAAAAAGAAAAAGGTTTTTAAAAAAAAAAATTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAACCGAGGAAAAACTTTTTTTTAAAACGCGGCCGGCGCGGGCCCCCTTAAATATTTTTTCTCCCCCCCGGGGGGGGGGGGGGACCCCCAACAAAAAAAAGGAAACACCCAACACTACTCCCCCCCCCCCAATTTAGAAAGGAAAGGGGGACTATAAATTTAAATAAATATATTCATACTCGTGGGGCGCGGCGGCCCGCCCGTCTTTTTTTTT | |||||||||
gi|3325687|gb|AI054573.1|AI054573 coau0001G16 Cotton Boll Abscission Zone cDNA Library Gossypium hirsutum cDNA clone coau0001G16 TGCAAATCCAGT-CAAAAGTTA EST sequence (targeted fragment marked with yellow): CTGGAAATTGAATAAGAGTATAGGTGGGTTGTAAACGAAGCAATGAATCGCTGTCAATACCCACAATTAATGATGCTGCTCAGTATTCTAATACTGGTCCTACTGTCTTAGTTTGCGTCTTGACTTTTGAACTGGATTTGCCGACTTGAACTGCGTTGTTGATGGTTTCCAAAACCCGAGCCTGCAAATCCAGTCAAAAGTTAAAACCGGGCTGAGATTTACGAGTCTGATATATATGTGAGGTATTATGTGTTAAAACTAATTCAGGTAAGCTTCTTCTTTTTCTGGTATATGTATATGTATATGTATAATGAGTGTGNNNGGTGTGTGAAAATCTTTGCTATAGTGGATATTTGTACAGCCTTTATTGAAGTTGAACATTATACTGCAAACAGGACTTGTAATAATTAATGAGCTTGCAAGATGTGAGCATGATAGCGTATTTGAAGAGTTTAGCTAGAGTTCTTTCCTAGTGCTATATATAATCTGAATATTTATTANTAGTGCTNTTTATATANTAATAGTTNGGATTTTTTGTGCAAACATATAACCAGACCTAAATGAATTTAACCAAANATCTANNATTTGATATCATATCTACTCCTACATGGAGTNTTGGAATTGATCAAATCTATTTGGCTGGTCGAAAACAACAACCATGGCACCTTTCATATTATGGATCCCN | |||||||||
gi|164279339|gb|ES811073.1|ES811073 UFL_167_32 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TGCAAATCCAGTCAAAAGTTA EST sequence (targeted fragment marked with yellow): CGGCAGAGCAACTTGTAACTGGATTTGTAAAATTGCAGAATGTTAGTTATGTACTTTTGCATAATTGATTCATTCTCCTCATATATGGCTATCAAACATACTCACTGTAGTTTTAATCTCAAGACACATGATTAGACTGTAAAAACGATGGGGGAATTTGTGGAGTTTCTGGATGGGATGTGTACAAGTTAGTTGAGCCTTAAACCCAGAATTTCTATACTACAACTTCTTGAAAAAAAAAAAAAAAAAAA | |||||||||
gi|109858900|gb|DW487879.1|DW487879 GH_RMIRS_066_C12_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TGCAAATCCAGTCAAAAGTTA EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAATCATGGTTTCATCTCCTCCGAAACATCGGTTGACGAGATGGTGGATTGCTTTTCTTCCGAGTTTGTTTCTGCATTTTGACTGTATTTGCAGGCAAGTTTATCTGTAAGCTCTTGTATTGGCAACTCCAGTTTATGACTTGGGTCTTTAGGCTTCAAATCAACTGCCGTTACCTTGCATGCAATGGAACAAAAACGATTAGGAGGGTCTTGAAGGTATCTTCCACAAATTTCACAAGCAGCACCAGTTTTTGATTTTGTACATGGCTTGGAATCTTTACCTTGAGGCCGAGGATTCAAATGTACAGCTTTCTCACCATTGATTTTGTATGTCTGAATTTTCGAACAGTCGAGAAGTTTGTGGATTTCTTGAAGACGAACAACATCTTGATAGACATATTTGCAGATCTGAAAGGAGGGATGGTGAGTGTGAGCCTTACAATGCCTGCAAAACCCAATACTACAATGGATGCAAAACACGTTTTTCTCATTTTTTCTCAGGTTTTGATGTTCAACACAAACCCCAAAGAACTCGCTTTCCACAAGGCCTCTAACCCAATCTCTTTCCTTCTTTATGTATATCCCGCAGCCCACCTACAAATAACAATTCATTCCAAGTTTTGCTGCTTTAATAATTACTCAAATTCCATGGATACGCAACGATGCAATCAATACACAATCTGGGAAACATATTAATTTCGACACCAACTATAAAGTTGTTGAATTCATGAAAAAGTAAAAAGTTTAAGCCAAAACAATATGTATTAACCCAAGAAGCTTTACTGCCTGTACTTTTCCTGAGTTCAGTGATGCAATAAATACAATACTCAAAAATCTAAATTTTCCTGGGAACCAACCATGAGAGAAAAACTAA | |||||||||