| mature miRNA: TTACATTGTGAAACGGAGGGA species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|193217941|gb|EY196638.1|EY196638 B08_R13_061 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA sequ TTACATTGTGAAACGGAGGGA EST sequence (targeted fragment marked with yellow): GAATTCGGCACGAGATGGAATCAAGCCAGCAGGGGTTGCTGTGATACTTGAGTGTTTGCATATTCATTTCCCGAATGTGGAGTCAGTCCTCCTTGACTCAAAGCATCAAGGATGGGTAAAAGTCCTGGTGTCTTCGTGTTCGGGGGTTTTTGGAAATGAAAATGCTGACGCTTGGAGTGATTTTCTTGGTCTTTTGAAATTCAGAGGTGTGACTGTGGATAGAACTCTAACCAGGGACTCCGTTAATCAAAGTTGGTGCCCTTCAAATTCTTCATCTATGGCTAAGATTTCATCCGAGCTTGTAGCGGCCAACCCTGAAATGGTTGCTGCAGTAGCATCAATACTCAGATCTTTGGGTGAAGATCCATTAAGGAAAGAGCTTGTGGAAACTCCTAGCCATTTTGTGAGGTGGTTGATAAACTTTGAAAATACGAAGTTGGAGATGAAGCTGAATGGCTTTGCTTGTGGCATATCCGATCTTCTCAAACCTAATGGGGAAATCAGCTCCCGCAACAACGAACAGATGCATTCAGAGTTGAACCTCTCATTCTGGTTCACAATGTGAGCATCACCTGCTTCCCCTTTTTATGGTGTGGTCCATATTGGATACTTCTGCCCTAAAGGAATCAATCACCTTGGGAAGTCCCTTTTGCAGTCAATAGTACATTTTTTACNGGTTCCAAGCTCCAAGTGCAAGAAA | |||||||||
gi|164274511|gb|EV495788.1|EV495788 sg068F11 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence TTACATTGTGAAACGGAGGGA EST sequence (targeted fragment marked with yellow): AGAAGAAGAGATCTCATAATTGAACTTCATGCAGTTTTGGGGAATAGGTGGTCCCAAATCGCTGCACAACTGCCAGGAAGAACCGACAATGAAATTAAGAACCTATGGAACTCTTGCTTAAAGAAGAAGCTTAGGCAGAGAGGCATTGACCCTGTCACCCACAAACCCCTCTCAGAGGTTGAAAATGGTGGTGAAGACAGCAAGAGTCAACCCACAAATAGCCTGGATATGGCAACTTCTGGTGCATCTACTGAACTGAACCTCAACACCGACAATCCTAAAGCAGGACCACCGTCGGTCACTGCACACCATTTCCCAATTGGAAATTGGAAGGCTCCCCTTGCTCCAACACAAATCAACAGCAGCAAATAACAGTAAGCAAAGACCTTGGTTCATGGGACAAGNCAAGCCATCTTGATTTTGGTGGGGGCATTTTCCCAATTTCGACAATTTGAATTATTGCTTCCAATGGTAAAGGTCTCCGTCCAAAAACCTCAAAACCCCAATTCTTCTGGTTCAACCCAAAAACAAGGTAAAACCGTGTCCGAATATTCAAGTTCTTGAAATTCCCGTTTCAAATTCCCATTGGTGTGGCCTTTCTTCCCACCAAGTGAACCTCATACATTATCATAACATGCTCCCTAATTGGGTGTGTCAAGGCCCCTCTTTGATATACCCCTTTTTATATTCCCCCTTCCTTTCACAATGTATTCACATGTGGGTCG | |||||||||
gi|109828366|gb|DW226989.1|DW226989 GH_HYPT_01-01-28R_D09_InvR_29Apr04_073_R Stem - 3 weeks after planting Gossypium hirsutum cD TTACATTGTGAAACGGAGGGA EST sequence (targeted fragment marked with yellow): AAACTTTTGCAGCATCTTTATTCACGGGGATCTCTTAAATGAGTAACCCTCCATTTCAGAATGTAAATCCAAACCAAATAGACATCTCACTAATACCTACAATATACATTAACCCGGCAGCTTCAATGGATATAACACCATAAAAATCGAACAACTCTAAACTCCAAAGGAAAGAATGGGAAAGAAAAATTACAATAATCTGCATATACTGGCAATCTGATTTTACATTTAATTAAAATCCCAGTAAAGAAAACCTGTGTTAGAAAATCCCTCAAGCACATACCTTACATGAATTCTTTGTAACTCGTCTCTATAACAGGTTCATCAAAACAGGTAAACCAAATCAGCTCTCTACTCGTATTTTCGTATAAAATTGAAATATCTCAGTGGGGGCAATGTAGAAATCCAGTCATTCATCCGCTCCACTGTTCAAATATCCTACCGTTATATCGTGACATCATATCATCATCAACCTATGTGGCAATCCCTCCATTTGACTGCCTATTTGTAACGTTATAACCGCCAATGTAACCAGCAGAGTTATTAGACATAACATCTGAAGTTGTATTTCCCAGACCAAAATCAAAAGAACTAGACTGCTCTAGGTCTAAGGGTGAAGATTGCCACGTAGAATCCTCGAAAAATGAACCATTGTCATAAATATCAGCATAAGCCCTGTCATAACCACCATGGGATGATACCTGGGCAACACTGGTTCCACTGCTTCTCCCATGGCCTATCCCTCCCCGATGCATACCAAAATCGCCACTTCCATACCTAAAGATGCTACTATTGTAAGC | |||||||||
gi|164337387|gb|EX172412.1|EX172412 H03_L1985D-5-4_029 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsut TTACATTGTGAAACGGAGGGA EST sequence (targeted fragment marked with yellow): CTTTCTCCCTGCTATGTCCTAGGAGGGTGTTGCACGACTGTTTTCATGGGAGAAACGACAACGACAGGGGCGGGTAGATTATTCATGTATGTTGATCCACCTTAGGTTCATGAGCTGCCTTCCAAATGCCTCAGTTTCATCTCTCCCAGGCTATTTGGAGCATTGGGATTTCACAGACTAGTATTTAGATAAAACAGTTCAACTCCCACCATACGGTTCTTGCAAATTGTACGACTATAGAGACGGACGGCCAAGTTTTCGACCTTTTGTTGCATCTTTGATGTAAATCCTGAGAGGCCAATTTGGTGGCTCACTGGCGTCCCTTGAAATATAAAAAAGTTAGGGGATTTTTCTTGAGATCGAACTAGTTCTTCGTAAAATCGCACCAAACTTCTTATACTTCCTCCGTTTCACAATGTAATTCATTCTAGCATTTCCCACATTCATATAGTTGTTAATGAATCTGGACGTATTTATCTAGATTCATTAACAACTATGTGAATATGGAAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTACGTTTCAAAGACACCTATATTTTAAAATGTCAGCTTGGTAATTAATGAAAGTGCCATTTTTTATTAACAAAATCTTGCGAAATACAATTATTACCTTCAACGTTAGGGGCAGACTAANGGCTTTACCTCAAGGACTAAAATACATATAAAAAAAGGAATATTTGGGAGTACTTACTCTATTCCAAAATAAGCCAACCCCGTACTCACATCCTAGTACAAGGTTGGTATATTTTAGGACGGAGGANNTNNNNNNCCCCCCCCCCCCCCCCCCCCAAACA | |||||||||
gi|164359754|gb|ES833797.1|ES833797 UFL_346_81 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TTACATTGTGAAACGGAGGGA EST sequence (targeted fragment marked with yellow): GGCACGAGCTTCAATCCCCACTTCTACTTTCCCCTCTTTTCACAATCTAAGGTTCAAACCAAGCCTTGTATCAATCCGTGCAACTCTCTTGTGCTTCCTCCTACTAAGCTATGTTCCTCAGATCTCTGTCTTACAAGTTTTAGCTTTGGTGGCCCCAGACTGATTCACAGAAGTAGTGTTATCTCCAGAAGTAGCACTGGACCTGGTGGTGCTCCTGGTTCAGGTGATAATGAAAGCAGGAATGTGCTGGATGCTTTTTTCTTAGGGAAGGCTGTAGCCGAAGCATTGAATGAGAGAATCGAGTCCACAATTGGGGAATTTTTGAGTGTTGTTGGAAGGTTGCAGGCTGAGCAACAAAAGCAAGTGCAGGATTTCCAGGAAGAGGTATTGGAAAGAGCAAAAAGAGCCAAAGAGCAAGCGGCACGCGAGGCATTGGAGGCACAAAGGCTGATTCCAAAGTCTACTTCCCTAAGTACATCTATGGGCAGTGGTGCCACTGCAAACAATGGGGCTGCAGCTAAAGCTTCGCCCTCAACTGCCAATAACGGAGTTTCTACAACCCCATCCTCCTATAATCCCGCCAACGCTGCTGCTGCTAATACAGACCCTGGGCCTGACGCTAAAAAGGAATAGTGCCAAGTATCTCTATTTGTATTTCACACTTTTCATCTGATACAGTACCAAATAAATATAATATCCGGGGTGTTTAATCCCCATGATCCTTTTTGTTTGAATCTATCTCTGCTCCCTTTATATTCAACAAAAAAAAAAATAACTTTCAGGTTTAAAAAAAAAAAAAAAAAAAA | |||||||||