| mature miRNA: TTCTCTTCTTTCGCGCGTGCG species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164362913|gb|ES795421.1|ES795421 UFL_618_54 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TTCTCTTCTTTCGCGCGTGCG EST sequence (targeted fragment marked with yellow): GGCACGAGCTTAACCTGGTGCTTGAGTATGTTCCGGAGACTGTCCACCGAGTTATCAAGCATTATAATAAGATGAACCAAAGGATGCCACTGATATATGTTAAACTCTATTTTTACCAGATTTGTAGAGCACTTGCTTACATTCATAACAGTATTGGTGTGTGCCACAGGGACATAAAGCCACAAAATTTATTGGTCAACCCGCACACTCATCAGCTAAAACTGTGTGATTTTGGAAGTGCCAAAGTTTTGGTGAAAGGGGAACCAAACATATCTTACATCTGTTCTAGGTACTATCGAGCACCTGAATTAATATTTGGTGCAACTGAATACACCACAGCCATTGACATCTGGTCTGCTGGCTGTGTTTTGGCTGAGCTATTGCTTGGGCAGCCTCTGTTTCCTGGTGAGAGTGGAGTACACCAGCTTGTTGAAATTATTAAGGTTCTAGGTACCCCAACAAGAGAAGAAATCAAGTGCATGAATCCTAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGATATTTCATAAGCGTATGCCTCCGGAAGCTGTGGATCTTGTTTCACGACTATTGCAGTACTCTCCAAATCTGCGTATCACAGCTATTGAGGCTTTGGTTCATCCATTCTTTGATGAGCTACGTGATCCTCACACCCGCCTACCTAACGATCAATTTCTTCCCCCACTGTTCAACTTTAAGCCTCACGAACTGAAGGGAGTTCCTACGGAAATGGTACCGAACCTGATCCCGGAACATGCAAAAAAGCAATGTTCCTTCCTTGGATTATAATGGAAATATATAATTCCTTTCTGCTTAAATCTTTAATGTCTGCTCCCTGCAAAAATCATGGGGCTATGGTTGAAAAAAAAGTAATTAGTAAGCCCTGTTTCCATTTATATGAAAAAAAAGCCCTTGTTTATTGTTTAATTTGGTTCCCTTTAATAAAAAATTTTTTTTCCAATCAAAAATTTTAAGGGTCCTTTTTTCTTTGCCCTTTTATTTCTTCCCCCCTTTTGTGAAAAAAAAAAAAAACTTTGGAATATATTGGCCCCTTTAAAAACCCCTTAAAGGAAAAAAAGGGTTGGAACCCCTTTTTAAAAAAAAAAAAAAAAAAAAACCTCGCTTTTTTTCCCCGCCAACCCCAGGGGGGAAAATTTACCCAAAAAAAAACAAAAAAAAAACCCCACCTGTGAAAGAAGAGAAGAGGGAGGGGGCGCGGGGAAACACCCCACCTTTTTTTGAAACAAAGGGGGGACCAACCACAGAAGAATAAAAAAA | |||||||||
gi|164297712|gb|EX170508.1|EX170508 F11_F9_093 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, TTCTCTTCTTTCGCGCGTGCG EST sequence (targeted fragment marked with yellow): CCTTTTAGNCTGGNGCTCCCGCGCCTGCGGTCGNCACTAGTGGNTCCAANNATTCGGCACGAGTGAAAGAGGAGAAGTAGAGGCCTTTAGCTTATCCGATCATGCCTCCAGCTATATTTCAGATATCTTGAAGGTTTATGAGAAGGCTGAAACAACAGGGTGTCTTACTGAAGAACTTGCTTGCCAATGTATTTCATTTTACACACAACTGGGGAGATTGGAGGAAGCCAAGAAAGTAGCAGAGAATCTTTGCAGTGGAAAACTTTTAGATTCAGTACAACTATGGCTTTTAAGGGTTTCAGTAGAAATTAGATGTATCACAAAGGATTCTCTTTCTTCTAGCAAGGCTGATGCATTATCCATCTTTGAACTTTTTAGAACTGTTCTAACAAAAATGTCAATATCAGAAGCTGAGAGCTTGTGGATAATGGCTCTCAAATTCTTTGCAAATCAGAAAAAATCTTTTGAGAAGCTGATTGAACTTTCTCTCAAGGCAGTCGCTAAATATGGTGGCAGTGAGAATGGGTTCTCTCTTTCTTCAGCTGTAGTTAATTTCATCCTTCAAAAGGATGGACTTAAACATGCAAGAGAGGTTTATAAGCGATTCCTGGCTCTACCTCATCCAGGTCTTGCATTATACAAAAATTGCATTGAATTAGAGTCAAATCTCGCTTCTCTTGGCAACGAGGATTCTCTAGTAAATACCCGAAGGTTGTACGAAGCTGCGCTTGCAACTTATGACCAAGACACTAGCTTATGGNAAGATTACCATTCCGNGGGAACCTAGTTGGGACATCAGAACTGCTGCTGCTNTCTATTGGCGGGCTCGGGAATNCTTAAGGACTCTGCTGGANATTTACCTTCCCTGACAGTNTAAATCTGCATATTTTTGANAGTTCTGCATTTTCGAGGNCNTTTCNTTTTTTATTTTAAAATTTGGGGGTTTGANGGGAACCANGGAATCCCTNTTNTTAGTTCCAANGGANTTTNGGNAAAA | |||||||||
gi|5047690|gb|AI728838.1|AI728838 BNLGHi11786 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to (AF031886) erythrocyte TTCTCTTCTTTCGCGCGTGCG EST sequence (targeted fragment marked with yellow): AATATTTTCACCTTTTTTTTTTCAATTAATTTCTCAAAAAGAAACTAAAAACCTAAGTGACGCCGAAATTTACTACAAGATGCCGAAGAAGATGGGTGTAAACAGCAAAGCCGAGGCGGCGCGTGCGCGCAAGAGCGCCGCCGAATCCGATCGGAAAGAGCGTGAAGCACGGGAGAAAGAAGAGAATTACTGGCGCGAAGCCGAGGGTCCCAAATCCAGGGCGGCCAAGAAACGCGAGGAAGACGCAGAGAAACGAGCTGAAGCCGCTGCTCGCCGTGCGGAGGCGCGTCGTCNAGCGGAGATGGAGGAGAAAGAGATAGATNAAGCGATGAAGAAACCAGATAAGAAGGCGAACCGTGTGGCAATTCCCGTCCCTAAGGTGACGGAAGCGCAACTACAGGAAAGGAANNGAGGGGANCAANCNGANATGGCGAAAAAAGCGGAGGAGGCCNGNAANANNCAGAGTCGGACGGCGGCGGAAGAAGAGTATGAGAGGATGGTATTAGTGACGAATACGAATAGGGATGAATCCCTGAATGAG | |||||||||
gi|84170905|gb|DR459553.1|DR459553 CM077E06 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence TTCTCTTCTTTCGCGCGTGCG EST sequence (targeted fragment marked with yellow): GACGAGTGTTACACTCTTCATACAACAGCTCATGCGGGAAAGAGGAGAGAAAATCCACCGGAGGACTCATTTGAAGCAGCTCGAAAAGTGAAGGAAATGTACTGCTATACATGTTCTGATGTGGTCAAGGAGTTCAACAAGCATGACAAAGAACCTGGAAAATATATCAAACATTGGAGAGGCTTTAGACCGAAGACTGGAGCACCATACTCCTGTGATATTGGTTATGAACGGTTTTTAGGCCCTGAGGTTTTCTTTAGTCCTGAGATCTACAGCAGTGATTTTACTACTCCCTTACCAGTTGTAATAGATAAGTGCATTCAGTCAGCACCAATTGACACCAGAAGAGCTTTGTATAAGAATA | |||||||||
gi|164262107|gb|ES799767.1|ES799767 UFL_551_88 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TTCTCTTCTTTCGCGCGTGCG EST sequence (targeted fragment marked with yellow): GGCACGAGTGAAAGAAAAGAAAAATGGTTCTGCTCAGAGAAACTTTGGGATGATGTAGTGGCCGGACCTCAACCGGAACGTGGCCTTGGCCGGCTGAGGAAGATCACAACCACCCCACCCTTGTCCACCAATAGATGAGGCTTCATCAATGGCGATGCCGACGAGTCCGACGACACCTGGGACACCGTCGACGCCGGTGTCGGCTCGTAGGGACAACGTGTGGAGGAGCGTGTTCAATCCAGGTAGCAACCTTGCAACCAAAGGTATTGGCGCTGAAGTTTTCGACAAGCCTCAACCTAACTCTCCTACTGTTTATGACTGGCTTTACAGCGGGGTAGACCCGCGAGCAAGCATCACCGCTGATTGGGCGATGGCTGACGGCGGCGGAGGGTAGCAAAACCACTAGCAGAAGGTTGCTGCTACTGAAGGAGCAGGATTTGCATGTAAATATATATATCGTTCTTTTTAAAAGTTTTTCAATGGGTCAATTAAGTAGTAGTAGTAGTAAGTAAGATGTTTAAAAGAGTAAGCGGCAGCGCAGGGTGGTCGATGACCTTATGTCATTCAAGATTCCGGCCGTGAGCGGCGGCAGCTGCTGCTATATTAAATTATTATTAAATAAAGGGAAGGGGTATTGTACGAATGATGTTGCGTTAGTATGTGATTTGAACAT | |||||||||
gi|164339959|gb|ES793200.1|ES793200 UFL_499_06 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TTCTCTTCTTTCGCGCGTGCG EST sequence (targeted fragment marked with yellow): GGCACGAGCCCAAAATATGCCGTCTTTTTCCAACCCAATCCAATATCGTGGTTCTTACCACAGGGGAGCCCAATCCGAAGTCCAGTTTCGGATTCCAGACGACTTGGATCTCGTGTCCGACTCCTTCGAAGGGGTAGGATCCGAAGACGACATGTTTTGTAGTTACATGGACGGGGGGATGGGGGGGGAATCGGCGAAGGGAGTCGAGGTGGCTGCTGGGTCTTGGAGTCAGAACCCGAAAGGAGAGGAAGTGAGTGGTGGGTCGGGGATAGGGGAGAAGTATAATGGAGGAGGGAAAGGAAGACATCCGTATAGCTTTTCGGTTGATGGATGCTCCGTGATCGAGTCCGGGGAGGGTAAGAGGGGCATGGATTCTGAGGGTGGTGGTGGGGGGGGGGGGGGGGACCCACCGAGGTGGGAGAGGAGGAGGGGGAGGGGAACGTCGCCTCCGCGCTCAAGCTAAGAGAAGGGCCGGTATATGTCTGAATTAGGAGAGGAAAGGGCAAAGCACTGTGGAGGGAGGCACACGGCTCTGGGCTGGAGGCGTGGCCCTATTCGAGAGGGATCCCGCAGGGCTGGACGGGGGGGGGGGGGGGGAGGCTTAGGGGCGCCGGGCTCCAGGGAAGGGGGGGAGAACAGGGCCGCGGCTTATGTGGATGGGAGCCAGTGGGACGGCAGGGGAGAGGGTAAGTAGAAGTGGCTTGAGGGCCGGGCGCCTGGGGAATGTAGGGAGGGCAGGATGGGGGGTGGTGGGGGTGGAGGAGGAGTGCGCGGGAGGCGGGACCCTGAATGCTCTCAGTTGGGGTGTCGCGGGGCGGGTGGAAGAGGAGGGGGGGAAGGTGGGGACGAAGGGCATGGTAAAGGGACGGGGCGGGCGGGGTGGGTGAACGTGTGAAAGAGGAGAAGGCGAGGCGGCGACCGGGGAACGAGCGGAGGATGGCACGGTGGGGTCTGGACGGGGAGGGGCGCTGGGCCACCGAGACAGGGGGGGGGGGGGGAGGGGGTTGTTGATAGAGGGGTGGGG | |||||||||
gi|5048862|gb|AI730010.1|AI730010 BNLGHi5943 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to (AF073522) CRP1 [Zea may TTCTCTTCTTTCGCGCGTGCG EST sequence (targeted fragment marked with yellow): GTTTATAATACAGTTATATCGATTTGTGGAAGATCGAATAATTGGGTTGAAACCGAGGGGTTATGGAGAAGAATCCAGGAAAATGGTTATATAGGAACACAAGTCACATATTCCTTGCTAATTAGCATTTTCGTTCGTTGTAATCAATGCGAATTGGCAATTGATGCTTACACTGAGATGATTCGAAACGGAGTCGAACCCCGTGATGACATTATGCATGCTATGATTAACGCATGTGTGAAAGAAGAGAAACGGGATTTAGCGTTATCTATATTTCAGAAAATGTTGGATGATGGATTGAAACCGAATCTAGTAGCTTGCAATGCATTGATTAATTCACTTGGAAAAGGCGGAGAGATCAAATTAGCTTTTAAAATCTATGATATTATGATATCTTTAGGTCATAAACCAGATGATTTCACATGGAATTCATTGCTTGGTGCTTTGTATAAAGCAAACCGACATGCCGATGCTCTTCACCTCTTTGAAAGAATAAGACAACAGAATGAACTCATAAGCCTTCATCTATACAACACCGCCTTAATGTCGTGCCAGAAGCTTGGTTCATGGGATAAGGCCTTACAGCTTTTT | |||||||||
gi|193218037|gb|EY197199.1|EY197199 UFL_278_F2 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA seque TTCTCTTCTTTCGCGCGTGCG EST sequence (targeted fragment marked with yellow): AAAAAGAGGGAACTCGCGCNGCCCTGCAGGTCGACACTNAGTGGATCCAAAGAATTCGGCACGAGGCTGTGAATTCCGTGCTTGCTTTAGCAGCTGGGTACACTACGTCTAAGTGTGAGATGACAGGAGTGGTGGTGGATGTTGGAGATGGGGCCACACATATTGTACCTGTTGCTGATGGTTATGTTATTGGGAGCAGCATTAAATCAATACCGATAGCTGGAAAAGATGTTACACTCTTCATACAACAGCTCATGCGGGAAAGAGGAGAGAAAATTCCACCGGAGGACTCATTTGAAGCAGCTCGAAAAGTGAAGGAAATGTACTGCTATACATGTTCTGATGTGGTCAAGGAGTTCAACAAGCATGACAAAGAACCTGGAAAATATATCAAACATTGGAGAGGCTTTAGACCGAAGACTGGAGCACCATACTCCTGTGATATTGGTTATGAACGGTTTTTAGGCCCTGAGGTTTTCTTTAGTCCTGAGATCTACAGCAGTGATTTTACTACTCCCTTACCAGTTGTAATAGATAAGTGCATTCAGTCAGCACCAATTGACACCAGAAGAGCTTTGTATAAGAATATAGTTTTATCTGGTGGATCCACCATGTTCAAAGACTTCCACAGAAGGTTGCAGCGGGATCTGAAAAAGATTGTTGATGCTCGAGTACTTGCGTCTGATACTCGGCTTGGTGGGGAAGTAAAAGCACATCCTGTGGAAGTTAATGTAGTTAGTCATCCTATCCAAAGATTTGCGGTATGGTTTGGAGGTTCTGTACTTGCATCAACGCCTGAATTTTTTGCGGCATGTCACACAAAAGCGGAATATGAGGAATATGGAGCCAGCATTTGCCGTACAAATCCTGTTTTTTAGGGTATGTATTGAGGAAAATATCTGTTTGTCAGCTGATTATTGAAAAAGCATTATCTGATAATGCTCAAGTGCGTA | |||||||||
gi|164251132|gb|ES800780.1|ES800780 UFL_502_96 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TTCTCTTCTTTCGCGCGTGCG EST sequence (targeted fragment marked with yellow): GGCACGAGGGAAAGAAGAGAACTCCAGAAAGGATAAATGGGTCATGACCAGGAGGAGGAGGAGACACCACCGTCAACCCCAACGACCACCGCAAGTGCCGCCAGAAAAGACCAAGAAGAGGAGACTTGGAACCACCAGAAACAAACCCTTATTCTGGAACTCTCTGTAGAAGCTCATAACTGGAGATCTTCAGGCCAAGATTGAAGCTGCTAGAGATATAAGAAAAGTTGTTAGGAAATCATCTGTTAAGACACGTTCAAAGTTTGCTGCTGCCGGTGTTATTCAGCCTCTAGTTTTTATGCTCTTGTCTCCTAATCTTGATGCACGTGAAGCCTCCCTTCTTGCTCTCCTTAACCTTGCTGTTAGAAATGAAAGAAACAAGGTCAATATCGTGACAGCAGGGGCCGTCCCTCCTCTTGTTGAGCTTCTCAAATTGCAAAACAGTGGTTTGAGAGAGGTAGCCACAGCAGCAATATTAACACTCTCTGCTGCTGCACCTAACAAGCCAACGATTGCGGCCTCTGGAGCTGCACCCCTTCTGGTTCATATCCTTAGCTTGGGCAGTGTTCAAGGAAGAGTCGATGCTGTCACTGCCTTACACAATCTATCTACCTGCCAAAGAGAACTCGACACCTATTCCTCATGCCAAAGCCCGTTCC | |||||||||