| mature miRNA: TTTGGCTTGGCAATCACACAA species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|84167901|gb|DR456549.1|DR456549 CM045H10 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence TTTGGCTTGGCAATCACACAA EST sequence (targeted fragment marked with yellow): CGGCCTTCAAGGTTTCCTTGTTTCAACGCTGTTGGTGGAGGCACTGGATCTGGTCTTGGCTCCCTCCTTTTGGAGCGTTTGTCTGTTGATTATGGCAAGAAATCCAAGTTGGGTTTCACTGTCTTCCCATCACCCCAGGTCTCCACATCTGTTGTTGAGCCCTACAACAGTGTCCTCTCAACTCACTCCCTTTTGGAGCACACTGATGTGGCTGTTCTTCTTGACAATGAGGCTATCTATGACATTTGCAGGCGCTCTCTTGACATTGAGCGACCCACTTACACCAATCTTAACCGTCTTGTCTCCCAGGTGATCTCCTCTTTGACTGCTTCACTTAGGTTCGATGGTGCCTTGAACGTGGATGTAACAGAATTCCAGACCAACTTGGTCCCTTACCCAAGAATACACTTCATGCTTTCTTCATACGCTCCAGTCATCTCCGCTGAGAAGGCTTACCATGAGCAGCTATCAGTTGCTGAAATCACCAATAGTGCCTTTGAGCCCTCATCTATGATGGCCAAGTGTGATCCTCGCCATGGCAAGTATATGGCTTGCTGTTTGATGTACCGTGGTGATGTTGTGCCCAGGATGTCATGCTGCTGTTGCACCATCAAGACAAGAAACTATTCATTCGTGACTGTGCCACTGGTTCAGTGTGGTTCACTACAGCACGATTGCGTCTGGTGTGACTGCTAGGCCAAAGCGTTGTGA | |||||||||
gi|54115847|gb|CO491356.1|CO491356 G.h.fbr-sw00746 G.h.fbr-sw Gossypium hirsutum cDNA, mRNA sequence TTTGGCTTGGCAATCACACAA EST sequence (targeted fragment marked with yellow): GCTTAGCGTGGTCGCGGCCGAGGTACGCGGGGAGAGAGAGAATAGTGAAGGGAAGGGGAGTATTTCAGAAGCCTCAGTGGCTTACTGTTTTCTCTGATTTTGATGCATTGCAGAAGAAGAAAAAAAATTAAAGTTTTAATAAATTAACAAATTGAAGAAAAAAATGGCAGAAAAAGGAATTTATATAGAAAGAGTTTATGTTTTTGCTAAGCCAAAATAATCTCTCTTTCTCATCTGCATTTTGGGTTTCTCCTCTCTCTTTTTCTTTCCTCTTTCAGATTTCAAGTTTTGACAAAAGAAAATCAGTAAGGGGTTGCTGGTTTTCTTGCTAGAAGATTGAGATTTATAGATAATGCGGTGTAAACTACATGCTTCATAAGCAAATTTAATGGATGATAATCTGATGGCTGATCCTGATTCGGAGTCCATTTTTCGCTCCGATGCATTGGGTTTACGGCATATTAGCAGCTCACTTTTCAATATTCCTGGTTTCCTGGTTGGGTTTAGCGCTAAGGGTTCTTCAGATTCTGATGCGGTACCTGCCCCGGGCGGGCGCTC | |||||||||