| mature miRNA: GGCCGGGGGACGGACTGGGAA species: Gossypium raimondii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|48878567|gb|CO129589.1|CO129589 GR__Eb28M09.r GR__Eb Gossypium raimondii cDNA clone GR__Eb28M09 3', mRNA sequence GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): GCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCGGCCGAAGCCGGCCTTGGGTCCAAAAAGAGGGGCCGTGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCAATTTCGCCCGAGAGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGACTGTTCGTCGCCCGGGGAAGGCCCCCGAGGGAGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGCGGGAGCAGCTCGAGCAGTGCGCCGGCAGCCGACGGGTTCGGGACTGGGACCCCCGTGCCCAGCCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGATCCATTTTGCCGACTTCCCTTGCCTACATTGTTCCATTGACCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGCGGACGGCACTGGGTCCTCCGGATTTTCAAGGGCCGCCG | |||||||||
gi|48880379|gb|CO131401.1|CO131401 GR__Eb43K20.f GR__Eb Gossypium raimondii cDNA clone GR__Eb43K20 5', mRNA sequence GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): TTTTGCTCTACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCGGCCGAAGCCGGCCTTGGGTCCAAAAAGAGGGGCCGTGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCAATTTCGCCCGAGAGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGACTGTTCGTCGCCCGGGGAAGGCCCCCGAGGGAGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGCGNGAGCAGCTCGAGCAGTGCGCCGGCAGCCGACGG | |||||||||
gi|48819547|gb|CO120860.1|CO120860 GR__Eb024L10.r GR__Eb Gossypium raimondii cDNA clone GR__Eb024L10 3', mRNA sequence GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): CGAGTTTTGAGACCACAAGGAGCCTTGATGGTGTTTCCATGCATAGGGTCACTGACCCAAGTGACAATTTGCCCAGCACGACGCACTGCCCTAATTAGATGGGGAAGCTTCACTCTCATATTCTCAGCACCCATTCTTGTGATAACTGTAATCCTTCCAGCTTTGTTGTGAGGGTTCAAAATTTCAATCAGCTGTACTAGTTCATTCGGATCCATCTTATCACTCACCTTAATTCCAAGGGGATTAGCAACTCCTCTCAAAAACTCAACATGTGCACCATCCAACTGTCTGGTTCGTTCCCCGGCCCACAGGAAATGAGCAGAACAATCATAGTAGCGGCCTGAAGTAGAATCAAGCCGGGTAAGTGGCTGTTCGTAAGGTAAGAGCAAGCACTCATGGGAAGTCCAGAATTCAGTTGTTGTCATGACAGGATGGTCAACTGTAAGTCCAGCTGCAGCCATGAATCCGAGGGCCTCATCCACACGACTAGTTAGTTCACGGTACCTATCTCCCTGCTCGCTGTGTTCGGTGCAATCCCAATTCCACTGAGTATCCCTTTGCATAGCAGCATAACCTCCAGTAGCAAAAGCTCTCAAAAGATTCAAAGTAGCTGCTGATTGACAGTAAGCTGTAATCATTCTTTGGGGATCAGGGATCCTAGACTTTTCATCGAAGGAATCCC | |||||||||