| mature miRNA: TTGGTTTCTCTAGTTCTGCAC species: Gossypium raimondii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|48793017|gb|CO094331.1|CO094331 GR__Ea16G04.r GR__Ea Gossypium raimondii cDNA clone GR__Ea16G04 3', mRNA sequence TTGGTTTCTCTAGTTCTGCAC EST sequence (targeted fragment marked with yellow): CAATGTTCGCTTTCAAAAATTTGGCAGCAGAAACATGATTACCATTTGAACCAGCTGGAAAGCACAGAGTTCCACCTTCATGAACGCAGCAAAGGACCAGTTTACTAAAAAGAGCTTGCAAGCAGTCTGAATATATAAAAGCTGTGTTGCTATCAATTGGGAACCCATAGTTGCTCCTAACAAATTGCTGTATACTGTGAGTGACATCAATTTCAAACTCCCCCATATTTTGTCGTGCAAAACTTTCAAAGATAGCAGCCTTAACTGGAGAAGGCGTTGGCAAGAACCATTGATCGACATCCATATGTATAAGAGAGTTCTCGTCACCAGAAATGGACAATTCAGCATTATTAAGGACTGAGATTGCTGAAGTAGAGAAACCGATCACCTCAACTGATTTGGACTTTTCAGATCTCTGTAAATGTGAATGCCTGTCTGTCAGTTGAAAGGCTAGAAGCTCGTGAAACAGATGTCCATAGTAGTATTGGCTAATCAATGAAGTATTCCCTTCAAGTACTTCGACAGTTTTTGACAAGGCTTTTAAGATAGCCTCATCTTCTGATATCACAAAGGCAACTTCTAAATCTGAATAGACCTGGTTTTTTACCAAGCCACAAAGGATCGCTGAGGGTGAGGGCAGAGGAGTTCCTGATAGATATTTGAGTAAAAGGGGGGTAACTGGAAGGCTCGATAAATCAAAG | |||||||||
gi|48821290|gb|CO122603.1|CO122603 GR__Eb04F04.f GR__Eb Gossypium raimondii cDNA clone GR__Eb04F04 5', mRNA sequence TTGGTTTCTCTAGTTCTGCAC EST sequence (targeted fragment marked with yellow): TCCTGCAGTCCTTTTGAAGAATTCCTCAATCTTGCGTGAAGAATTAGGGAGACCAATTGATAGCCTATATGAATATATTGATCCAACACCAATTGCCTCAGCTTCTATAGCACAGGTACATGGTGCAAGGCTTAAAGGCTCCCAAGATGATGTAGTTATAAAGGTATTGAAACCTGGAATCAAGGACATTTTGGTGGCAGACCTCAACTTCATATATATAGCAGCTCGAATATTGGAGTTCCTAAATCCTGATTTCAGCCGTGCTTCACTGTAGGTTGGTATTGTTAAAGATATACGGGAATCCATGCTTGAAGAAGTTGATTTCAATAAGGAGGCTACAAATATTGAATCCTTCAGGAGATATCTCGAAGCCATGGGATTAACAAGGCAGGCAACAGCCCCGAGAGTGTATAACTATTGCAGCACGCGGCGAGTTTTGACTATGGAGAGGCTTTATGGAGTTCCTCTTACTGATTTAGACTCTATAAGCTCACTTGTCTCTAGCCCAGAGAATAGTCTTATAACTGCACTTAATGTCTGGTTTGGAAGTTTACTTGCATGTGAAACCTTCCATGCTGATGTGCATGCAGGCAATTTATGGTTACTGCGTGATGGCCGCATTGGGTTTCTTGATTTTGGTATTGTTGGACGAATATCACCAAAGACATGGGCTGCTATGGAAGTTTTTTTGGCATCTATTGCAACTGAAGAGTACGAATCAATGGCATCTGCCTTGATTGAAATGGGTGCAACCAATC | |||||||||