| mature miRNA: AACCGGTTTATGTTCGGTTTA species: Helianthus annuus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|211656819|gb|GE521051.1|GE521051 CCFU426.g1_C11.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFU426, mRNA sequence AACCGGTTTATGTTCGGTTTA EST sequence (targeted fragment marked with yellow): CCATCATTAACTTCAATAATTTTCTTTTCTGAATTTTAATATAATGATGACAGAATGCTCTTGAAGACACACACTTTAATGAGAAGTAATATAGTATGGCTTTCAAAATCTTTTTTTTTTTGAAAGGCCAACAAAATACTATTATCTCACCAACAAATAGCCAGCAGGGTGCTAGCTTTAGTACACCAGTACATCAAACCAAACATGCTACATACACACATTACCATCCCATTCTTAAAATATCAAAACAGTTCCACAAATCTCAATCCATGTTCCTCTGCTTATGCTCGAAGACCGCTGCATCCCTTTTATATCTCCCATAACAGTCTGCATCGGACATAAACCGTTTGGAGCGTTTATATTCCGCCTTGCCAACGCACACCTAGTCGGAAGCCTTTCGAGGTTCGCCCGCCATGTGAGAATCCCCACATTTTTTTGGAACCCAATTATTCCACCTGTGCACATACTCTGGAATACTGTATCTATGCAGGACAAGATGCTCTTTTATACTTCTAACCGTAAATTTCCCAGACTCGTCCAGAACCCATCACCACTCATCCTTCCTATCTGACCCCACAAAATCATTCACTAACTGTAACAACTGATGCATCTGGGCAGCCTCATCCCCATCTGCAATCCCCCTACTCCATTCCCAGTTCCACCCCAAACTCCCCCTTATCATGAACTATGAACTGATTTTGTGTTTGATGACGAAAATCCAAACAAGTGATTGGTGAATTAGGGTTCAAATGCTAAAGC | |||||||||
gi|211657492|gb|GE521687.1|GE521687 CCFU594.g7_C06.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFU594, mRNA sequence AACCGGTTTATGTTCGGTTTA EST sequence (targeted fragment marked with yellow): GTAAGGCCAACAAAATACTATTATCTCACCAACAAATAGTCAGCAGGGTGCTAGCTTTAGTACACCAGTACATCAAACCAAACATGCTACATACACACATTACCATCCCATTCTTAAAATATCAAAACAGTTCCACAAATCTCAATCCATGTTCCTCTGCTTATGCTCGAAGACCGCTGCATCCCTTTTATATCTCCCATAACAGTCTGCATCGGACATAAACCGTTTGGAACGTTTATATTCCGCCTTGCCAACGCACACCTAGTCGGAAGCCTTTCGAGGTTCGCCCGCCATGTGAGAATCCCCACATTTTTTGGAACCCAATTATTCCGCCTGTGCACATACTCTGGAATACTGTATCTATGCAGGACAAGATGCTCTTTTATACTTCTAACCGTAAATTTCCCAGACTCGTCCAGAACCCATCACCACTCATCCTTCCTATCTGACCCCACAAAATCATTCACTAACTGTAACAACTGATGCATCTGGGCAGCCTCATCCCCATCTGCAATCCCCCTACTCCATTCCCAGTTCCACCCCAAACTCCCCCTTATCATGAACTATGAACTGATTTTGTGTTTGATGACGAANATCCAAACAAGTGATTGGGGAATTAGGGTTCAAATGCTAAGGCTCTGCTCGATGATGAAGATGAAAGAAATATATAACCGGAGATCCCTTGATTAAAGAAATGGATAGCGAGGGAAATAGGTGAGATGAGGCAAATTGAGAAGGGTTATCATACTGACCGATGAAAAAAATAGGGGGTCCTGGATATTTTGCA | |||||||||
gi|211651831|gb|GE519394.1|GE519394 CCFU3401.b1_B12.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFU3401, mRNA sequence AACCGGTTTATGTTCGGTTTA EST sequence (targeted fragment marked with yellow): CTTATATTATCTTGATATATCTAGGTCCATGATGACGAAAAGAGAAAGAATAATAATGAACCTGAACCAGCTCCGTCGGATCTATCGGAGGTTAACCCCGACATGAGCCGGTTGATGCTCTCTTCTCAGTGAGACGATGATTTTCACAACTCTGGTTGATGCTCTTTTTTCGTGATGTGTTACGAAACCCTAGGGAGCGCCTTTCAGAGAGGGATAAATTGAATTAGGGCTCACAAAAGGTGAAGAATGACATGATTTTGAGGTGTTTGGGTGTAAAACAGGAAGAGATAAGAGCCCGTATAACTGCATTTGCAGCCGATCTTACAAATGAAAAAGACAAATTTACCCATGCTCTCTCCCGAGCTGAAAAAATAAGGAGGCACGGCGTGAGTTAGATCGGAAACGCGATTTGCAATATCAACGCCAAATGTAAGACCTAATTATATTGCATTAAAAAGGTTTTGTGTGCAGGCCAGGCATCAAGCGGAAAAGAAGAAAGAGGAGGAAGCAAAAGCGATAGCATTGGAAGCCGAAAAAGCTACAAAAGAGGCAGCTGAAATGGCGGCTGNCGGAAGTCAAAGAAAGGCTGCTGAGGCTTTGACTGCTTCACAGGGAGCGGTTCTAAGGAATCTGGTTTTGGTAGACT | |||||||||