| mature miRNA: GCATAGCATCATGAGCAATCA species: Helianthus annuus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|22387714|gb|BQ970193.1|BQ970193 QHB41F07.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB41F07, mRNA sequenc GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): AAGATGCTTGGACAGACTCTTGTCACTAAACAAACTGGCCCACAAGGAAAAGTCGTCAGCAAGGTTTACTTGTGTGAAAAGGTGTCACTTGTCAATGAGATGTACTTCGCAATCACTCTTGATCGTACAACTGCTGGTCCCCTTATAATTGCCTGCCGAGAGGGAGGAACTAGCATTGAAGACCTTGCGGAGAAATACCCTGATATGATCATAAAAGTACCTATTGATGTCTTCAAGGGAATTACGGACGAAGACGCTGCTAAGGTTGTAGAGGGTCTTGCTCCTAAAGTAGCTGACAAACAAGCGTCTATTGAACAAGTAAAAAAGTTGTATAATCTTTTCCGTGAATCCGATTGCACACAACTGGAGATCAATCCCATTGCAGAGACTTCCGATAACAAATTGATTGCTGCTGATGCTAAGTCAAATTTTGATGATAATGCTGCTTACCGTCAGAAAGAAATATTTGCTCTTCGTGATCCAACCCAAGAGGACCCTCGCGAGGTGGCAGCTGCTAAA | |||||||||
gi|22386657|gb|BQ969136.1|BQ969136 QHB36P21.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB36P21, mRNA sequenc GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): AAGATGCTTGGACAGACTCTTGTCACTAAACAAACTGGCCCACAAGGAAAAGTCGTCAGCAAGGTTTACTTGTGTGAAAAGGTGTCACTTGTCAATGAGATGTACTTCGCAATCACTCTTGATCGTACAACTGCTGGTCCCCTTATAATTGCCTGCCGAGAGGGAGGAACTAGCATTGAAGACCTTGCGGAGAAATACCCTGATATGATCATAAAAGTACCTATTGATGTCTTCAAGGGAATTACGGACCAAGACGCTGCTAAGGTTGTACAGGGTCTTGCTCCTAAACTAGCTGACAAACAACCCGCCTATTGAACAAGTACACAAGCCTGCATAATCTTTTCCGTGAATCCGATTGCACACAACTGGAGATCAATCCCATTGCACAGACTTCCGATAACAAATTGATTGCTGCTGATGCTAAGTTAAATTTTGATGATAATGCTGCTCACCGTCAGAAAGAAATATTTGCTCT | |||||||||
gi|22313335|gb|BQ914554.1|BQ914554 QHB10P12.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB10P12, mRNA sequenc GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): AAGATGCTTGGACAGACTCTTGTCACTAAACAAACTGGCCCACAAGGAAAAGTCGTCAGCAAGGTTTACTTGTGTGAAAAGGTGTCACTTGTCAATGAGATGTACTTCGCAATCACTCTTGATCGTACAACTGCTGGTCCCCTTATAATTGCCTGCCGAGAGGGAGGAACTAGCATTGAAGACCTTGCGGAGAAATACCCTGATATGATCATAAAAGTACCTATTGATGTCTTCAAGGGAATTACGGACGAAAACTCTGCTAAGGTTGTAAAGGGTCTTGCTCCTAAAGTATCTGACAAACAAGCGTCTATTGAAACAAGTAAAAAAGTTGTATAATCTTTTCCGTGAATCCAATTGCACACAACTGGACATCAATCCCATTGCAGAGACTTCCCATAACAAATTGATTGCTGCTGATGCTAAGTTACATTTTGATGATAATGCTGCTTACCGTCAGAAAGAAATATTTGCTTCTTCCTGATCCAACA | |||||||||
gi|90465100|gb|DY926979.1|DY926979 CHAZ1669.b1_J09.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAZ1669, mRN GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): CGCGGGGGTCTTCATTTCTGTATGCTGTAGTTTACGCCTACGCATCTCACGTATGTTATTGTTCTTAAAATTTGTTTTGTTATTATCATAGTTTTTCCTAGAAGTTGCAAGTTGCTAAAGGGCATTCTGCACCCCATGAACACCTAGAGAACAACCTGACACAAACACCTACAGAGTTGAACCAGAGGCCAGGGCCTTCAGGACGGCAGTGTATTGGAGCTCCGATTGAGCCGATGGAGGACACGTCTATTGTCAACGATGAAGCTATGGCGGATGTTGTTTCGGTAACAGGGCTGCTCATGATGCTATTCAAGAATAGTTATTTAATTAAGCGAGAAAGATGACTCTATGGAAACAATACCCAAAATTCTCAAGTATAATTGTGAAATTAAAGAGGCAAATGGGAGCTTGATGAGTGATTTGCTGTAAATGTTGAAGAAAGCAGCAAGTTTAATGCTTTTAAGGTACTAAAAATGGGCGAAAAACTTAAGTATTAGTTGTGTTTTTAATAGGCACCTTGGGATTTTGGGGAACTGTTTGGTTATGTAGATACAAAAGCCTACTATTATGAGACTAGTGGGAAACCCGCGCGTTGCGGCGGAGTCGACATTTCAATTTTACATTAAACGTC | |||||||||
gi|22389557|gb|BQ972036.1|BQ972036 QHB9I18.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB9I18, mRNA sequence GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): AAGATGCTTGGACAGACTCTTGTCACTAAACAAACTGGCCCACAAGGAAAAGTCGTCAGCAAGGTTTACTTGTGTGAAAAGGTGTCACTTGTCAATGAGATGTACTTCGCAATCACTCTTGATCGTACAACTGCTGGTCCCCTTATAATTGCCTGCCGAGAGGGAGGAACTAGCATTGAAGACCTTGCGGAGAAATACCCTGATATGATCATAAAAGTACCTATTGATGTCTTCAAGGGAATTACGGACGAAGACGCTGCTAAGGTTGTAGAGGGTCTTGCTCCTAAAGTAGCTGACAAACAAGCGTCTATTGAACAAGTAAAAAAGTTGTATGATCTTTTCCGTGAATCCGATTGCACACAACTGGAGATCAATCCCATTGCAGAGACTTCCGATAACAAATTGATTGCTGCTGATGCTAAGTTAAATTTTGATGATAATGCTGCTTACCGTCAGAAAGAAATATTTGCTCTTCGTGATCCAACACAAGAGGACCCTCGTGAGGTGGCAGCTGCTAAAGCAGATTTAAATTACATTGGTTTGGATGGGGAAATCGGATGCATGGTGAACGGTGCGGGGTTGGCAATGGCCACCATGGATATCATAAAATTACACGGTGGAACCCCGGCCAATTTTCTGGATGTTGGCGGGAATGCTTCTGAAGGACAGGTCGTGGAAGCTTTCAAGATCTTGACTTCAGATGATAAAGTCAAAGCAATTTTGGTCAATATTTTTTG | |||||||||
gi|22461592|gb|BU026072.1|BU026072 QHG13B02.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHG13B02, mRNA sequenc GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): AGTCAAGCAATCATCAGTGGAACATTCTCAATCATTAATCAGAGTCAGTCGCTTAGTTGTTTTCCAAGGGTTAAGGTTGTTCATACATCGAACAAGAAACATGGTCAGATTTACATTCCGGGAATCAACTGGATTCTCATGATCCTATGCATCGCTGTCACCATTGGATTCAGGGACACCAAACACATGGGAAACGCATCAGGGTTGGCTGTTATGGCTGTAATGCTGGTTACAACGTGCTTAACATCATTGGTGATCATTCTTTGTTGGCATAAACCGCCTATTTTAGCCCTTTGCTTCCTACTCTTCTTCGGTTCCATCGAACTACTCTATTTTTCCGCTTCTTTAGTCAAGTTTCGCGAAGGCGCGTGGCTCCCAATTCTCTTAGCACTTATTCTAGTAACCATAATGTTCGTTTGGCACTACGGCACCACCAAAAAGTACGAATTCGACCTTCAAAACAAGGTCTCATTAGAATGGTTACTAGCTTTGGGACAAAGTTTGTGTATCTCGAGGGTACCCGGGATCGGGCTTGTTTTCACGGATCTTACGTCGGGTATCCCAGGTAACTTTTCGCGGGTTGTGACCAATCTGCCTGCGTTTCATC | |||||||||
gi|211627116|gb|GE499759.1|GE499759 CCFT1896.b1_P18.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT1896, mRNA sequence GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GCATTTATTGTGCATACAGGCTCGGAAGCAATGTTTGCGGATCTTGGTCACTTCTCATATGCTGCAATTCAGATTGCTTTCACCTTCATGGTTTATCCTGCGTTAATACTAGGATACATGGGACAAGCGGCTTATTTGTCTAAAAATCACGATATAGCTACCGACATTAGTTATTATGTCTCGGTGCCAAAAAGTGTAAGGTGGCCGGTTCTTTTTATCGCCATTCTTGCTTCTGTCGTCGGGAGTCAAGCAATCATCAGTGGAACATTCTCAATCATTAATCAGAGTCAGTCGCTTAGTTGTTTTCCAAGGGTTAAGGTTGTTCATACATCGAACAAGAAACATGGTCAGATTTACATTCCGGAAATCAACTGGATTCTCATGATCCTATGCATCGCTGTCACCATTGGATTCAGGGACACCAAACACATGGGAAACGCATCAGGGTTGGCTGTTATGGCTGTAATGCTGGTTACAACGTGCTTAACATCATTGGTGATCATTCTTTGTTGGCATAAACCGCCTATNTTAGCCCTTTGCTTCCTACTCTTCTTCGGTTCCATCGAACTACTCTATTTTTCCGCTTCTTTAGTCAAGTTTCGCGAAGGCGCGTGGCTCCCAATTCTCTTAGCACTTATTCTAGTAACCATAATGTTCGTTTGGCACTACGGCACCACAAAAAGTACGAATTCGACCTTTCAAACAGGTCTCATTAGAATGGTACTAGCTTTGGGACAAGTTTGGGATCTCGAGGTACCCGGATCGGGCTGTTTTCACGGATCT | |||||||||
gi|211624352|gb|GE502164.1|GE502164 CCFT3165.g1_I23.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT3165, mRNA sequence GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GCAAATTTACAAACTTCTCCTTGGTTATCAATTGTACATATAGGAAAGTTCACATGATCATCCAAGAAGAAACAAGCATCACCATTTACCAATATTCTGGGACCACTGAGGGCCATAACAGAGATCTGATTTCTCGATATGTAACAGTTGGGTTTGTAAAGTTACTAGAAGACTATTAACAAAAGAGCTGAGCTTTCTAAGACCGGTGATGGTGGAATGATCCATGTATGACGGGAATATATGACGACTCGTCTCTTTCTGTCTCACTAATGTACGACCCATGTACCCCATGGTTATGAGGTTGACGGGGGACGGCTGGCAATATCATAGGCAAGGCCAATGCACCACCAAATCTCCTAAAACCATATGTAGACAAGGGAATGTTTGTAACTTCACTTGGTTGTTCATGATGATATGCCGCATGATGAATCGGGTTCCTTTCGCGTGACTGAGAATTAGCCCCTGAACTCTCTCTGGTCCTCGAAACAAGCCGTTGGGTATAGTAAACGGGTTGAGCCCGAGCGTGAGTTGATCTCAGTGTAACAGGGTTAACCGGAGTTAAATTGCCACGCTCGATAAAATCTCTGTCTGCATTGTAAGGAAGGAAATGACAGTTCCAACCCCAGCTTGNGTGTTGAATGTAAGTTGAATGAACATTATAACGAGGGGCAGGATGGGGATTTAAGGGGTGATGGGAGTTGGAAC | |||||||||
gi|211611309|gb|GE486300.1|GE486300 CCFS2502.b1_K02.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS2502, mRNA sequence GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): ATCTTGATTGGCTGAGAAGGGTTGGGTTGCCTCAGATCCATGGAACCCAGATTTCTTTTTGTGGAAAATTTGAAAAAGTCTTCACCTTTTTAGGGTTTTAATTTGTAATTTGTTGTGGGTCTTGTTTTATTTTACTGTTCTTGATGTTTATTGAAAGATAGGTTTTGGGTTTTTGTTTTTGTTGGTTTTTGAAGAATCTTGTATTGTTTAGTAGATTCTAAAGAGGCCCAATTTGTTGTTTTCTTGATATTCATATGAATGGATCATGAGATCCGGTAGTTGTCGGTTGTCACCTCGGATCTGTTGACCAAATCTTGTTATTGTTTTGTGAAATAGTCAACCTTGGTCTCAATTACACAAAGGGTTTCAGCCTATAGGTGTTGTTGTTCTTCGGTTCTTCGGTTCTTGATGAGTTGATGGTTTGTGATGCTATGATTAGTGATCAAGATTAAGGGGTTCATGTAGAGGTTTGGGGGTTATGTACTTATGTTGATGTGATTGGAGATATTTGTGATTTGAAAGAAAAAGTTGTTAGATGGAAGAGATGCGACCTACGGTTTCAGTTACGTTTAGTTTAACGAATCCGATCTCCGAAAACGCTGCTCTACAAAGTCATGTGGATTTCACTCAAATGAATCTGTTTTCCGAAACAACTGTTCTTCATGGAAATAGCAAGGGGATGACCGGTAAGGGAATTGTCGGTGACGAGATTATGATTCAAGAAAGCGATGCGGATGAAACTATGTCTGTTGAGGACGTNGCGATTGAAATCAACAGTGAGTTGTTAGCCATGAATGCAAATTTCGGTGTTTTAAGGCGTCTGTAT | |||||||||
gi|22463657|gb|BU028137.1|BU028137 QHH10D09.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHH10D09, mRNA sequenc GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TGTGTTCGGTTACAGGTCAAAATCGCCACCTCTACTAACACTATGCATTTTTTCTTCAGGATATATTGCGTTTTCATGCAGTTTACTGGCCGGCTATGTTAATGTCCGCTGGACTGAGCCTTCCCAATACTGTTTTTGGCCATGGTTTTCTGACTAAGGTATTTACTTACTATTTAGCCATTAAACGCTTATGTTAATAGCTTGTAATAGTTAAAAAAATTAAAAGATCTGATTTCTCTTAAAAATCACTGCGTTATAAGACATGAAATGAGCACTAAGCTCATATATATATATATGCTTTCATTTCATGCAGCAATGATTTTATTTGTAAAATTTTAGGATGGTATGAAGATGGGAAAGTCACTTGGGAATACCCTTGAACCAAACGAGTTAGTGCAAAGATTCGGGCCTGATGCCGTCAGGTACTTCTTTCTCAGAGAGGTTGAATTTGGAAATGACGGGGATTACTCCGAGGAACGCTTCATCAATATTGTCAACGCACATCTCGCCAATACAATCGGTATTTTGTTTTATTCGTAATATTAGAATATTGTTTCTATTCATATTTAACGCATTATTTACATGTTGACCCGTTTGACCCAAGCTCATTTTGACTCTTTACCCACCCGCCCGGCCTGTCCATTTTGCTACATCTATGANATTTAATCATTTTGATTATTAATGATGCCATGCCATGTANGAAATCTTCTTAATCGTACACTTGGACTTTTG | |||||||||
gi|90465614|gb|DY927493.1|DY927493 CHAZ2193.b1_A22.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAZ2193, mRN GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TGGCGAAGCTGCAGAAGCTATATCTTCGCTCCAGATTGCTGATGATGCTGTGAATGCCTTTTGTTTTCGATAGAATGATGAGAGGATGAATGCATCTTCGAGTGTTGCGTTTCATGCACTGATGATTTATTTCGCGTGTCTTTACAGGCGGAGATCTTAGAAGAATCATTCTCTATTGTGAGTGCCTGGTGTGCTGTGTTCATTTGATCTTGCTTCTTCAGTTTCTCCTCTGTTAGCGAGGAATCAAATACTGGTACTAGAGTGTTGATGTTACTGAATAACAAAAAGTTAATGTATCGTGTTTCTTTGCTTT | |||||||||
gi|211606937|gb|GE484070.1|GE484070 CCFS1348.b1_G02.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS1348, mRNA sequence GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GCAACATCGTGTCGGTTTCTTTTTCGCGCCAATCGCGTCGGTATGGCTAATATGCATAAGTGGCCTTGGTTTATACAATATAATCCATTGGAATCCACAAGTTTATCAAGCTCTTTCACCATATTACATGTTGAAGTTCTTCAAGAAGACCAAAAAACAAGGATGGATGTCTTTGGGAGGAATTTTACTGTGCATAACAGGCTCGGAAGCAATGTTTGCGGATCTTGGTCACTTCTCTTACGCTGCAATCCAGATTGCGTTCACATTTCTGGTTTATCCGGCACTCATACTTGCTTATATGGGTCAAGCAGCTTACTTATCGAAAAATCACCAAAACGTCGATCATATCAGCTATTACGTCTCCGTACCAGAAAGCTTGAGGTGGCCCGTGCTTGTAATAGCCATTCTTGCTTCGGTTGTCGGAAGCCAAGCGATCATCAGCGGAACGTTCTCGATTATAAACCAAAGTCAATCACTCGGTTGTTTTCCGAGAGTCAAAGTTGTGCATACTTCCGACAAGATTCATGGTCAAATCTACATACCCGAGATCAACTGGATACTCATGATCCTATGCATTGCTGTCACTATCGGTTTTCGAGACATCAAGCACATGGGAAATGCATCAGGATTGGCAGTAATGGCGGTAATGCTGGTGACGACCTGCCTTACGTCTTTAGTAATCATACTTTGTTGGCATAAACCGCCGAATATCGCTCTTTGTTTCTTGCTCTTCTTCGGGTCAATAGAACTACTCTACTTCTCGGCTTCGTTAGTCAAATTCCTCGAAGCGCATGGCTTCCGAATCTACTAGCACTCTTTCTAGTAACCGTATGTTCGTTTGCACTAC | |||||||||