| mature miRNA: GCCGGTTTGAACCGGTTTTTA species: Helianthus annuus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|22461214|gb|BU025694.1|BU025694 QHG10N22.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHG10N22, mRNA sequenc GCCGGTTTGAACCGGTTTTTA EST sequence (targeted fragment marked with yellow): TGGCCGCCGGTGGTGGAGTTATTTCTGATTGACATGTTTCCCTACAACCCCGGTAACACTCGTCTCTGTTTCTCTTCGCTTTCTCTCATTTCTTTTTCTGAGAATTGATGATAAGGATGAATTGTTGCTGAGAGGATGATGATGATGTTCGAGTCGAGATGTTGATGATAATGATGACAGTGGAGTGGTTATGCTGGTTCGGTCATCTGAGATTTCAGTTCGGGTGTTCGGGTCAGCCGCGATTTGGGTTTCGGGTCAGTGGGTTCAAGGTTGGTTCAAACCGGTTCGGAATCGGGTCAAGAGATGTCAAGGTGGTTCGAGTTCTCAGTACGGGTTTCAGTTTGGCTCGGGTCTCAGTCAGCCGCAGTCAAACAGGGTCAAAGATGGTCAACCGCAGTCAACAGATTTTGGTTCGGGTTCAGATTTTTCGTATTCGGCTCGGGTCAACTCGGGTCAAACACGGCTAACCCAGTCAACTCGGTTAACTCCGTTAACCCGGTTAACTCGGTCAACTCAGCAAGTCGACTCGGTCAACACGTTCGGTGTTTCGACTTGACAATTTGGAATATTGTAGAATGCACGCTAGCGAGTCACGTCTTGGAAACGACATCGTATATAGCTAGCTTTGCACAGGAATATTCAGGTTACATNTTCAAGTTAAGGCACGGTTGGAATAGGAGAACATGAATAGTCGAGTACTTAGTGGGCGTTCAATTTCTAGAAGTCTTCGCTTATATTTGCTTCCGCT | |||||||||
gi|22458354|gb|BU022834.1|BU022834 QHE8N06.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHE8N06, mRNA sequence GCCGGTTTGAACCGGTTTTTA EST sequence (targeted fragment marked with yellow): TGGCCGCCGGTGGTGGAGTTATTTCTGATTGACATGTTTCCCTACAACCCCGGTAACACTCGTCTCTGTTTCTCTTCGCTTTCTCTCATTTCTTTTTCTGAGAATTGATGATAAGGATGAATTGTTGCTGAGAGGATGATGATGATGTTCGAGTCGAGATGTTGATGATAATGATGACAGTGGAGTGGTTATGCTGGTTCGGTCATCTGAGATTTCAGTTCGGGTGTTCGGGTCAGCCGCGATTTGGGTTTCGGGTCAGTGGGTTCAAGGTTGGTTCAAACCGGTTCGGAATC | |||||||||
gi|28370932|gb|AJ541457.1|AJ541457 AJ541457 HaDpsR1 Helianthus annuus cDNA clone HO0009C15, mRNA sequence GCCGGTTTGAACCGGTTTTTA EST sequence (targeted fragment marked with yellow): GGGGGGTGCAGGAATTCTAGGATTCTAGAGGAGAAGGGATGAAAAGAAATGGTGAACCCAAGGCCTCTATTTATAATAAGATATTGACTTGGAGGCCAAGGAGTTTAAGAAGCTCTTGTCCTTGGGGAGATAAAGCATTGTCCTTGGTTGTACTCTTGTCCCCTTTTGTCTCTTGCCTTTTTGTCTCATATAAGAACCTTCATGAAGCTTTACTCCAGGTGTGCAATAGTCATGCCATGTAGGTAGAGGTGTACAAAAAAACCGGTTTCAGAACAGTAATCGGAAAAAAAAAACGAAACAGGTTTTTTAAAACCAGTTTTAGAACCGAACCGAACCGGCAGTTTGTGACCGGTTACTATTCTTGATCTGAAAAACCGGGTTAATAACCGAAACCGGTTTTAAAAAACCAGTTAAAACCGGTTAAAAACTGGATTTTTTTGACAAA | |||||||||
gi|22463534|gb|BU028014.1|BU028014 QHG9G15.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHG9G15, mRNA sequence GCCGGTTTGAACCGGTTTTTA EST sequence (targeted fragment marked with yellow): ATGATTAATAGACAGTTTTCTCTTGATGTGTGTGTTCCAATAGTTTTTGATCTCGTTATCTGTCCTTCCGGGTAATCTTGATGCAATCATGGACCATTTATTGCCAAGAACTGCATGGAGACTAACAATGAGCTGATCTTCCTGTGGGGTAAAATTCCCTCGTTTAAGATCCGGTCTAAGATAATTAATCCAGCGGAGCCTACAGCTTTTTCCACACCGGTTCAGACCGGCAGACTTAGGCAAAGATCTCCAAGAGCCTTCACCATGGGCGTTGATGTAGGTGACAAGACGTTCATCTTCTTCTTTGGTCCAAGCGCCTTTGTTGGTGTGGTCTTTCTCACAACAAGGTGATCTCACCATTTTTGAAGATGGTTTAGTTTTGGAATAATGGAAGAAGAAGAAAGAGGAAGGAGGAGGAGGAAGCCTTCCTATTTGCGATGCAATTGGCAAGCGCGTCTGTGTTACCCATGGTGTTGAAGTCCGCCATCGAGCTGGATTTGCTGGAGACCATTGCAAAAGCCGGCCCTGGTGCTTACGTCTCAACTGCTGACCTGGCGGCTCAGCTCCCCAAGGCCGACAACCCGGAGGCACCCATCATGCTCGACAGGATCTGCCGCCTCTTAGCCAGCTACAACGTGCTCGCCTGCAACCTCAACCGCAAGGATGATGGCTCTGTTGAACGTCTCTACGGTCTGGGCACCGTCTGTAAGTTCTTGGT | |||||||||
gi|211611108|gb|GE486229.1|GE486229 CCFS2464.g1_P15.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS2464, mRNA sequence GCCGGTTTGAACCGGTTTTTA EST sequence (targeted fragment marked with yellow): CTTTTTTTTTCGATACAAACTTCATTAAATTATAAATAGACATAACAGGTTAACTGAATAGGTTAAACATGTTAATCTGACGGCATATCTAACATATCAACCCATAGTCCAGACACCGACATATTTGCTTTGATAAGAATTGATTCAATTAGAAAGGGACAACACTAATTGCCCAATACCAAAACAAACTCCATACTTTAATCAGCCGAAAACGCTTTTCAACATTTATATACATGATACTACGCCTCATTTTAACCCTCCATAACCATATTTAAAAACCAAAATCCATCTTAGGGACACGATCTTTCGTCTGTAACACATAACAATGTCCGCGTTGACTCGCTCCGTTGACTTTGGGCTGGTGTGGTTGTTCTTGACGAACGCTTTGTGGCAACCAAAATGGGCTCTTTAGGCCACTCATCATCACTAACTCCATCATCAATCCCGTCCCATCTGTTTGCGTTATTAAAGACCGGGTGAACATACGCGTTTTCTAAATAGTTCTTGACATTTAAACATGGCTCACGTGCGCGTTCTAGCGTATCTTTCATCATAGCCTCCTGTAAAGGGTACCTAACAAAAGCGGGTTCATACCGGCCCTTGCAGAATCTATGAAACCAAATGGTCAAAACCGGGAGTACAATAAGCAATGGAGTTGATTGAGTAGCTTCTTTTGTGCTAAGCAACCCATCAAAGCAACTGTGAACAATCATGCAGTTATGATAGCCCATGAACTCGGGCCAAAAG | |||||||||
gi|90454645|gb|DY916524.1|DY916524 CHAY12384.b1_O23.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAY12384, m GCCGGTTTGAACCGGTTTTTA EST sequence (targeted fragment marked with yellow): ACCTCTTCCCACTTCCCCCAATCTCCATATCCTAATTCCTAACCCCACCCCACCTCACCACACCACTATGGACTCGGCGGACATCCCTAGCGGCAAGTCTCCCCGCTCACTCCAAGGCCCCCGTCCCTCCCCTCTCCGCGTCCACAAGGATTCCCACAAGATCCGCAAACCACCAATAGCCCCACACCCCCACTCCCACCCCCACCCACAACCACCACAGCACCGCCCACCAGTCATCATCTACACCGTCTCCCCAAAGGTAATCCACACAAACCCCAACGAATTCATGACTCTAGTCCAACGTTTGACCGGCCCATCTGCCCCATCTCCGGTCGGCTCCTCTTTCTCCGCCTTCCAAGACGACGGCGGCGGCGCAGTATCTCCGGCAGCCAGATTTGCATCCATAGAGAAGGCAGCTAAGTCCCCGGAAGGCCGGAAACCGGTTCAGACCGGCGATTTGGCGGCGGTGGACGGTTTTGAGATGGGTTATTTTCCAGGAATATTGTCGCCGGCGCCGGCCGCCTTGCCGCCGATTTCATCAAATTTTTTCTCACCGTTAAATAATGATTTTTTTCAAGATTTGATTTTGAGCCCTGCGTTACATAGTAATAGAAGTTATAATTATATGGAGGGTATTGGTAATCATTTTATGCCAAGTCCTACAAATCTTTTATCTTCACATATAATTTCACCCACAACTAGTCCAAATGTGGATCTTTTCCATAGCTTATTTGACTTGTAAGATGTAATTTGATTGGTTGATTGATAGTTGCCTTTGTTTACCAAGTAGAAGGGGTAGAGTTGTAATTTTACTTTAGTGAAATTATTTGTTATTTTTTTATTTTTTTGGTTGACTGAA | |||||||||
gi|51914051|gb|AJ828046.1|AJ828046 AJ828046 HaHeaR Helianthus annuus cDNA clone HaHeaR001J17, mRNA sequence GCCGGTTTGAACCGGTTTTTA EST sequence (targeted fragment marked with yellow): TCATGTGTGTCGAGATGGGGGTCCCGTTTCTCGGGAAAGTGCCGTTGGATCCGAAGTTATGTAAAGCGGCTGAAGAAGGTAGATCTTGCTTTGCGGGTGATGAGTGTCGGGTGAGTGCTTCCGCGCTTTCTGCGATAATTGCTAAGTTGTTGAAGAACGATACGATCGCGTGAGTGTGAAATGATGTGAGTTTATATTCTGATTTTGTGAATCTTGTTATGTGATTTTCGGTTTAGGGTTTAAGGTTTATTGTGAATTTTGATACCAAATAAAGAAACTTTAATGTTTATATCAATGTTTTAAAAACCGGTTCAAACCGGCCAGTTGTACCGGTTGAACCATCCGGTAAAACCGATTGAACTGCCCGGTACACCCGGTTGAACCGCCCGATACACCTGGTTAAACCGTTTTTGAGTCAAATCCGATACGGTGTAAAAACCGGATTT | |||||||||
gi|90466939|gb|DY928818.1|DY928818 CHAZ3551.b1_M23.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAZ3551, mRN GCCGGTTTGAACCGGTTTTTA EST sequence (targeted fragment marked with yellow): TAACAAACAAAACATTCCAATCAAAATTCCGGCGACAAATTTCGGTTAACAATGGCTGGAAGAGGCAAAAACATAGGATCTGCAGCGGCAAAAAAGGCAACATCGAGAAGCAGCAAAGCTGGTCTTCAATTTCCGGTCGGTAGAATCGCTCGTTTTCTAAAAGCCGGTAAATACGCCGACCGAGTCGGCGCCGGAGCTCCGGTGTACCTCGCCGCCGTGCTGGAATACCTCGCGGCTGAGGTGCTGGAATTGGCGGGAAACGCGGCAAGGGATAACAAGAAGACGAGAATTGTGCCGAGACATATTCAATTGGCGGTGAGGAATGATGAGGAGTTGAGTAAGCTGCTGGGTGACGTCACGATTGCGAATGGTGGCGTCATGCCAAATATTCATAACCTTTTGTTGCCGAAGAAGGCTGGTTCTTCGAAGCCGTCTGCTGATGACGAGTGAATGAGTGCTGTGGTGGTTGGTGATTAGGGTTTTGAGTTTGTGTTTTTAGTGTGTGTATATATTGGTGAACTAGTGGGGCATTTTATGTTTCTTTTATGTTATTGTTTTAACAATTATGGTTTTTGGTTATAAGAAGTAAGAACAATCTAATGTTTTAAAAACCGGTTCAAACCGGCTGGTTGTACATGTTGAACCATTTGGTAGAATTGGTTGAACCGCTCGATACACTTAGTTGAACGTTTTTTGAGGCAAATCTGATATGGTATAAAAACCGGATTT | |||||||||