| mature miRNA: GCGTATGAGGAGCCAAGCATA species: Helianthus annuus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|211619030|gb|GE496452.1|GE496452 CCFS7493.g1_I02.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS7493, mRNA sequence GCGTATGAGGAGCCAAGCATA EST sequence (targeted fragment marked with yellow): GGCAAAAAAACAGTAAATATCATAAGTGATTAACAAAAGCGTTATTTAAATAAAGACTCTACAGCTGCAACAAAATAGCAAACAACTTGTCTTAAAGTCCAAATACAAAAATATACCATTATTATTCTTCTTCCGTATGTGACAAACAAGTCCTCTTACATTCCAAACCAAGTTTGATCAGGCACCTCCCTTCTGCTTAAGGGTGATTTTGTCTCCCAAGCTTAGAGCAATCCCCTGTGTTTTGCTCCTAATACGTATATATCCACTAAGCTTCCCATCTCCGTGCTTCTCTATGCTCAAATTTACCAACGCGTCCTCTCCAAATACACTCTTTGCATATAAGTTGGCAGCCAGGAACCCACAATCACCTTCTAGTGCAGACGGTGCAGTGAGGCACTTCATGTTGGTGGAATTGATAATATGTTCAAGGAATTCTTTCTCATCTTGAATTACAGTGTTGACAGCAACCTGTATTTTCCCATTCAAACTCGGCCCACATAGTTCTGAAAGCCGCGTCACTACAGACAGCTGGAGATATATAATCCATAATGTCAATATGGATATCATTGAGGACAATAACAGTACGCTCCATCACTTTTGAAGTTTC | |||||||||
gi|211609041|gb|GE488973.1|GE488973 CCFS3875.g1_E09.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS3875, mRNA sequence GCGTATGAGGAGCCAAGCATA EST sequence (targeted fragment marked with yellow): AATATCATAAGTGATTAACAAAAGCGTTATTTAAATAAAGACTCTACAGCTGCAACAAAATAGCAAACAACTTGTCTTAAAGTCCAAATACAAAAATATACCATTATTATTCTTCTTCCGTATGTGACAAACAAGTCCTCTTACATTCCAAACCAAATTTGATCAGGCACCTCCCTTCTGCTTAAGGGTGATTTTGTCTCCCAAGCTTAAAGCAATCCCCTGTGTTTTGCTCCTAATACGTGGGGGTCCACTAAGCTTCCCATCTCCGGGGGTCTCTATGCTCAAATTTACCAACGCGTCCTCTCCAAATACACTCTTTGCATATAAATTGGCAACCAGGAACCCACAATCACCTTCTAATGCAAAAGGTGCAATGAGGCACTTCCTGTTGGTGGATTTGATAATATGTTCAAGGAATTCTTTCTCATCCTGAATTACAGGGGTAACAGCAACCTTATTTTCCTATTCAAACTCGGCCCACAAAATTCTGAAAGCGGCGTCATTACAGACAGGTGGAAATAAATAATCCTTAATGTCAAATTGAAT | |||||||||
gi|211651717|gb|GE518760.1|GE518760 CCFU3062.g1_L22.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFU3062, mRNA sequence GCGTATGAGGAGCCAAGCATA EST sequence (targeted fragment marked with yellow): GTGGAAAGGTAATTTCATAAGCAATTTCGATCTATGTTACAAGGAAAACCCTAAAATGTAAATGGCGACAAAGATTATCAATAAAGTTGAAGAACTTCTACCTTAAAAAGGTTCCATTCACCATGGAGAGCAATGATTTACTGGGCTTGCTTCTTTAGTTTTTGATTGATTTTCCAATGCTACAGTTCAACTTCAACAAAATCTTATAGAACAAGAAGGAAAAAAACTATTTTTTTTAAATCTTTATTAAGGTTTGGACAGGTTTTCATGGTTTATAATTAATCTATGAAACTTGTTTTAATTCTAGGTGTTCCGCTAGTTGAACTAGCTTATATGAACAGTGTTTTTATGGATCACCTAAAATCAAGATAAGTTCCAAAAAAAATGATTAAAAACCGTTAGGAAAAAGTTCCAAACCACCTAAAGATATAATAAATCTAAAAAACTACACATATCACTTTCTTAAATTGCTAGTTAAGGACAAAAAATCAGGGTTTGAGTCTCTTATACAAAAAAACAAGATGGGGAATATGCTTGGCTCCTCATACGCCATTCACGGAGGTCACCGGTGATACTGGTGGGCTCTGGGAATGGCATACAGGGAGCCGAGCATATACCTATACTCATCTATGGATCTATATATATCCTACACGGTATTAGATGTACTTTTTACCTCAAAAAGAACTTGGAAAAATTTGAT | |||||||||
gi|58736082|gb|CX947203.1|CX947203 DH0AQA21ZG04RM1 HaDevS1 Helianthus annuus cDNA clone HaDevS121G04, mRNA sequence GCGTATGAGGAGCCAAGCATA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTACTCAAACAAAAACAGTAAATATCATATGCAAAAAAACAGTAAATATCATAAGTGATTAACAAAAGCGTTATTCAAATAAAGACTCTACAGCTGCAACAAAATAGCAAACAACTTGTCTTAAAGTCCAAATACAAAAATATACCATTATTATTCTTCTTCCGTATGTGACAAACAAGTCCTTTTACATTCCAAACCAAATTTGATCAGGCACCTCCCTTCTGCTTAAGGGTGATTTTGTCTCCCAAGCTTAAAGCAATCCCCTGTGTTTTGCTCCTAATACGTATATATCCACTAAGCTTCCCATCTCCTTGCTTCTCTATGCTCAAATTTACCAACGCGTCCTCTCCAAATACACTCTTTGCATATAAGTTGGCAGCCAGGAACCCACAATCACCTTCTAGTGCAGACGGTGCAGTGAGGCACTTCATGTTGGTGGATTTGATAATATGTTCAAGGAATTCTTTCTCATCTTGAATTACAGTGTTGACAGCAACCTTATTTTCCCATTCAAACTCGGCCCACATAGTTCTGAAAGCCGCGTCACTACAGACAGCTGGAGATATATAATCCATAATGTCAATATGAATATCATTGAGGACAATAACAGT | |||||||||
gi|211621915|gb|GE495366.1|GE495366 CCFS6976.g1_O15.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS6976, mRNA sequence GCGTATGAGGAGCCAAGCATA EST sequence (targeted fragment marked with yellow): GGGGAAAAACCATGAAAAAATGTACATGCTACTGCTTTGGTTTAGTTACGACCAGAAACATTTGAATAGAAAAATGTCAAGTCGCGATATCGACAGTATACCAAAGGTTTCAAACAGCTAAGTGTTTTTCGCAAGGAGCACTCTTTGCAGATGGAAAGCTTCTCCTTGATTCCCGTTGAGTAATCGTTTCTGTAAGAAACAAGCACTTAGCTGCCTCAGAAGTGTCTCGAGATACGAATGCAAGCAGCTTTTATGGGCTTTCAAGTCCGGATTTGTAGACAATATTATGGCGTTTACTGCATCCGCCACCTTCTCTCTCTGTGATTCCTCCAGCAAATACCCCACTGTTGATTTATTTGGTTCTTCATACGCCAACAAAGCAGCACAGTCCTTCACAAGATCTTCATAGTGTTTCAAGTTATAAAACTTTTCAAATCGATTCTTCCCATAATCCATAGCTTCCTCTAGACGTCCAGCCCGAACTAGTTCGATGAACTTTTGACAGTGTAGCATAAGGCAAATGGCTGATGTATCATCCTGGATGGTCTCGGGATACCACTCATGTAGATTACTAATTGCATCATCAATTTTACCATCCATAATTAGCTTTCGAAGAATTTTCTATGAGTTAATGCATACATGGCATGCTCGTTGAAGCCATTATCATGAAAACCGGTAACAGGAGGAACTGAAGTTTGGCTA | |||||||||
gi|211643140|gb|GE511830.1|GE511830 CCFT8194.g1_D09.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT8194, mRNA sequence GCGTATGAGGAGCCAAGCATA EST sequence (targeted fragment marked with yellow): AGATCAAACAAAAACAGTAAATATCATATGCAAAAAAACAGTAAATATCATAAGTGATTAACAAAAGCGTTATTTAAATAAAGACTCTACAGCTGCAACAAAATAGCAAACAACTTGTCTTAAAGTCCAAATACAAAAATATACCATTATTATTCTTCTTCCGTATGTGACAAACAAGTCCTCTTACATTCCAAACCAGATTTGATCAGGCACCTCCCTTCTGCTTAAGGGTGATTTTGTCTCCCAAGCTTAGAGCAATCCCCTGTGTTTTGCTCCTAATACGTATATATCCACTAAGCTTCCCATCTCCTTGCTTCTCTATGCTCAAATTTACCAACGCGTCCTCTCCAAATACACTCTTTGCATATAAGTTGGCAGCCAGGAACCCACAATCACCTTCTAGTGCAGACGGTGCAGTGAGGCACTTCATGTTGGTGGATTTGATAATATGTTCAAGGAATTCTTTCTCATCTTGAATTACAGTGTTGACAGCAACCTTATTTTCCCATTCAAACTCGGCCCACATAGTTCTGAAAGCCGCGTCACTACAGACAGCTGGAGATATATAATCCATAATGTCAATATGAATATCATTGAGGACAATAACAGTACGCTCCATCACATTTGAAGTTTCATACACAATGTTCCCAAAAATCACCCCTGTCTCCGTTGATGACACTTTAAAGGTTGCGTTTATCTGCTTGCTTGATTCAGGGGCAAGAGAATAGTTC | |||||||||