| mature miRNA: GTTTTTGGCAACATGATTTTA species: Helianthus annuus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|211622853|gb|GE495939.1|GE495939 CCFS7252.b1_H14.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS7252, mRNA sequence GTTTTTGGCAACATGATTTTA EST sequence (targeted fragment marked with yellow): TCTTCATGTCATTATCAGTTTCTTCACTCAACCGTTCATCTTTCAATGCAATCAAAAGATTCTTGAATTCAAAAGCCCTGTCCGTTGCATAAGTCCTCCTGAGATGACGCCGGGTCAGTGATAATGGTGTTCGGATGATGGCGGTGGTAGGTTGGGGACAAAGCGAAGCCCCGACAACGATGGCTTTAGGGTTCTGTCGCAAGTCAGTCAAGGGGTTAGTAGGATTCGGGCAGATGAATATTGTGGTAAAGGATCCTTCTTCAATTGCTCGTTTGTTTCCGCTAAGATGATTTTGCAAAAAACTGCAAATTTTCTCAACTTAACTTGAGAAAACGGGATATAGAATAGTAGTATGTCGGGCATGGCCTGGTAGTACCCAAAAGAACCGAAACGCTGATAAATCTTTCGACCCTTCTAATTTACCAGCCGGCAGATCTGAGGTCTTTAGCTCTCTAATTTACCATTCTCGCTGTAATTCAATGAAGTTTCTAGACTGGTACCTGAAGATTGGAGTCGTATCAGCTGCAATCGGAGGTTCTATGGAGTATTTTATGATCAAAACCGGCTTCTGTAAGTCCCACCTTTCTTATAATGATATAATCCACTGATGTATTAGTTATTTCAGTTTTTATCATTTGCCAGTTGAATTTTGTTTATCTGTTTGTGTTTGTGAAACTACATATTCTGGTTAATCATCACTATTAGGGTTTTATTTTATCTTTATTCATCACCGGCGAATTTTT | |||||||||
gi|211608105|gb|GE484302.1|GE484302 CCFS1468.g1_H08.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS1468, mRNA sequence GTTTTTGGCAACATGATTTTA EST sequence (targeted fragment marked with yellow): CTTTTTTTCTGACAGCAAAGTTAATATAAATAAGTTTATTAGGTAAAAATATATTGCTAAAAATAGTTAGAAGAATTTCAAACATCAATGGGATCAACAGGAAGGGAAATAGCCCTATGAAGATGTTGAGGAAGCAATTCCCTATAACCATTAAACGTCTCATTTTCGTTTTTCATGCATATTCTTTTATCCAAATTTATGTTAAAACCGCGAGACGGATTCGATGCAAGTCCTAGTTGTTGATCTCTAAGCTGCATCTGATATTTGGCCCTGAGCCACCTTAATTCCTGTTGAACCTCGTTTTCATAATCATCGCGCACTTTCGTTTGGTACAATTCGGGTTCAGGTGGTTCGTGTTGCAGCCATGTATCAGAATAGTGTATATCATCTGACTGGCTCGATAGCACCGGTGCACCATCTGTGACACATTGCTCAGAAACATCATTTTGATATGTTATTTCTTCAAACCGACCATGAATGGATGCACACTCATGTCTTGAACCGTTGGCTGCTTCTAACTTGTTTTCTGACTGATGATCTTCTTGTAATAAGTTTAATCCTGTTTGCCATTCTGGCACCAAGCATAAGATTTCACCGTTGATCATGTCGGCTATCTTATGAACATCTTGATTCGCAATATCCAGGTCAGCAACCATTCATTTGCACGTCAAATGCTGTGTTCGCTTCATGTCAAACCGAATAAATGTTCCGACTCGGCTTCTTTACTGCAATCGTAGCTTCATACATATCATCATCTCGTTCTCTTCCTTGAAAAAAGTGACTCACAAA | |||||||||
gi|90461926|gb|DY923805.1|DY923805 CHAY6969.b1_A15.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAY6969, mRN GTTTTTGGCAACATGATTTTA EST sequence (targeted fragment marked with yellow): ATTCCTCGTCATGATCATCATGCACTCGCAAAAGCTCCGGTGGAAGGACAGCTCGTGCTCGTCCAGCACGCAGCGCTCCAGCACCAGTCAAACAAGCACCCCCTCCTGTCCCTGCCCCGAGCAGTGGTGGATCAGTGCTCGGTAGCATTGGTTCAACCATAGCCGAAGGCATGGCATTTGGCGGTGGGAGTGCTGTTGCTCACAGGGCTGTGGATGCTGTAATGGGTCCTCGTACAATTCGTCATGAAACTGTTCCCGCTGCTGCTCCAGAACCTGCTGCCACAGCCAGCTCTAATTCTGACGCTTGTGGCATGCACTACAAGGCGTTCCAAGATTGCATTAACAGCTCTGGAAGTGACATTAGCAAGTGCCAGTTTTACATGGATATGCTGTCTAGCTGCACGAAGAGCTCAGGTCTTGTTGCTTGAGTGAAGTGATGTTGCTGAAAATATTATTCGTTGATACTTTTATTTTTGGAAGTTGAAGTTTTGACCTTAAAAGCACTTTGGTGATGAATAACGGCATGGATGTTTGATCATGTTTATTTTTTGAATGCGCTAAATAACTTATCTGCGGAAATCAACGTTTGAATTCAATTACCATTTTCCGTACAGGGGATGCCATTAACCGTGTC | |||||||||
gi|90466962|gb|DY928841.1|DY928841 CHAZ3574.b1_L05.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAZ3574, mRN GTTTTTGGCAACATGATTTTA EST sequence (targeted fragment marked with yellow): ATTTCATATTCATATAATTTGTTCTCTGTCTACTCTCTCTAGAATTCATCATCATCATTATGCCTCGCAAAAGCTCCGGTGGAAGGCCAGCTCGTGCTCGTCCAGCACGCAGCGCTCCAGCACCAGTCAAACAAGCACCCCCTCCTGTCCCTGCCCCGAGCAGTGGTGGATCAGTGCTCGGTAGCATTGGTTCAACCATAGCCGAAGGCATGGCATTTGGCGGTGGGAGTGCTGTTGCTCACAGGGCTGTGGATGCTGTAATGGGTCCTCGTACAATTCGTCATGAAACTGTTCCCGCTGCTGCTCCAGAACCTGCTGCCACAGCCAGCTCTAATTCTGACGCTTGTGGCATGCACTACAAGGCGTTCCAAGATTGCATTAACAGCTCTGGAAGTGACATTAGCAAGTGCCAGTTTTACATGGATATGCTGTCTAGCTGCAGGAAGAGCTCAGGTCTTGTTGCTTGAGTGAAGTGATGTTGCTGAAAATATTATTCGTTGATACTTTTATTTTTGGAAGTTGAAGTTTTGACCTTAAAAGCACTTTGGTGATGAATAACGGCATGGATGTTTGATCATGTTTATTTTTTGAATGCGCTAAATAACTTATCTGCACAAAANA | |||||||||
gi|211616427|gb|GE492731.1|GE492731 CCFS5730.b1_D18.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS5730, mRNA sequence GTTTTTGGCAACATGATTTTA EST sequence (targeted fragment marked with yellow): CTCATTATGCCTCGCAAAGCTCCGGTGGAAGGCCAGCTCGTGCTCGTCCAGCACGCAGCGCTCCAGCACCAGTCAAACAAGCACCCCCTCCTGTCCCTGCCCCGAGCAGTGGTGGATCAGTGCTCGGTAGCATTGGTTCAACCATAGCCGAAGGCATGGCATTTGGTGGCGGGAGTGCTGTTGCTCACAGGGCTGTGGATGCTGTAATGGGTCCTCGTACAATTCGTCATGAAACTGCTCCCGCTGCTGCTCCAGAACCTGCTGCCACAGCCAGCTCTAATTCTGACGCTTGTGGCATGCACTACAAGGCGTTCCAAGATTGCATTAACAGCTCTGGAAGTGACATTAGCAAGTGCCAGTTTTACATGGATATGCTGTCTAGCTGCAGGAAGAGCTCAGGTCTTGTTGCTTGAGTGAAGTGATGTTGCTGAAAATATTATTCGTTGATACTTTTTATTTTTGGAAGTTGAAGTTTTGACCTTAAAAGCACTTTGGTGATGAGTAACGGCATGGATGTTTGATCATGTTTATTTTTTGAATGCGCTAAATAACTTATCTG | |||||||||