| mature miRNA: TGAAGCTGCCAGCATGATCT species: Helianthus annuus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|211653791|gb|GE519787.1|GE519787 CCFU3609.b1_B15.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFU3609, mRNA sequence TGAAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): CTCGCGGGCTCATCAGCGGTACAATCGCTTACGAGAAAATCTAGCCGAAAGGTTTCGCCAACTGAAACCAAACAACGCAACCGATGTCATTAGCTTTTCGTGGATGAAATCCGCATTGGGCTCTATCTGTGAGACACTTAATGACATAAGAAAACTCATTGTAGATTTGGAACTCCCTATATGTAACTGGGACGGCAAATGGGTCGATATGTACTTAAACAACAGTTTGAATCTACTTGATTTTTGCAGTGCTTACGGGACCGATATCGTAAGACAAAGATTCGGCTATGTCATGTTGAAATGCGCGTTACTCGATCTAGAATCCGGTAATCCACAAAAGCTCATGCTGGCATCTTCTTCGTTTCACGAATGGATGCAATATCAAAGGCGTTATGACAACTCGAAACTACAGGATTGTTGTGATGTCATATCGAAGCTTGAGGAAACGCTTAACTTGCCGAAAATCAAGAACATACCCAAAGCAAAGGACCTGGTCCGAGCCATGTACGGACTCAAGGTTCAGACCATGTTCATTTTCAGCACGTTAGTGGCTGCATTTTCAACTACATGTCGGACTCTTGTAGATTTGCAGGTTCCCAAAGAGTATTTGTGGCATGAATCTNTTACCGAATTGCANACCGTTATGAACAGTGAAATCAAGAACATTTACGCCTCTGGGGATGTTTATACATTAAAGGAGCTTCGAGTACTTGACGAANACGTCAAGAAACTGTACCCTTTGCTTCATGATGGGTTGGGTGAAGTAACGC | |||||||||
gi|51914417|gb|AJ828412.1|AJ828412 AJ828412 HaCotR Helianthus annuus cDNA clone HaCotR003B04, mRNA sequence TGAAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): GGGGGACCCGTTGAGATCAGGCTGGCAGCTTATATATGTAGACCGGGAGAACGTTCTTCGTCTCCTTGGTGACGACCCTTGGCCGGAGTTTGTAAGCAGGGTATGGTGCATTAAAATAGTGTCGCCGCAAGAGGTGCAGCAAATGGGGAAACAAGGGGTCAAGGTTCTTGACCCGGTTCAGATACAGAAACCCTCAGACAGCAACTATACTCCGAGCCAGCAAGAGTCTATGAACTTGAGCAATGGGGTCACATCAGTGGGTTCGCTTGAGTACTGAACCGACTTCATGCTAGGATTTACGGTTATATGTAACGTTACTTAGCGGCACTTCAGGTGATTTGGTTTATTAAGAGCTTTAGGTACTTTATATGAACCCGAATATGTAATTAATATGATCACGTTACTTATGTCTTCGGAGTAAANNNNNNNNNAAAAAAAAAAAAA | |||||||||
gi|211646190|gb|GE512097.1|GE512097 CCFT832.b1_O15.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT832, mRNA sequence TGAAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): CTGGCGGGGACATGTCTTCATCTCAACACACATGGATGCTGATTTTGTAAAATACTCTTTGTCAGTAGCTTAATAATGCTATTGCTCTTTGGAAAATATATAGGCTCTGAAAAACCACAAGTCCCATGTTATTTTATATTTGGAGACTCGCTTGTTGATAATGGTAATAACAATCATCTCGAGAGTAATTGGAAAGCCAATTATCCACCTTATGGGGTCGATTTTCCTAAAGGTTATACTGGCAGGTTCACCAATGGCAAAACCTCTGCAGACATCATTGGTCAATCTCTTGGGTTTGATGAGTTCATTCCTTCGTATGCTACTGCAACCAATGACCAGTTCGGCAAAGGCGTAAACTACGCTAGTGGTGGTGCTGGTATTCGAGATGAATCTGGAAGTCATAATGGTGACATAATCTGCTTGGATCGGCAGCTGCGTAATCACAAATCAACAGTTTCGAGCCTTAGGCGCAGTACAAAGAACACAACATTCCTAAAAGAATGCATTTATCTGATAAATATCGGTAACAATGACTACATAAACAACTACTTAATGCCAGGAAAACATTACAACTCAGGACTGATATATTCAAAAGATGAATACGCTGAAGTCCTAATGAAGCAATACCATCACCAGCTAAGGGCTTTGTATAACTTGGGAGGTAGGAAGATTGCTACGTTCGGTTTGACACATATAGGTTGCACCCCGTTTATG | |||||||||
gi|211610738|gb|GE488693.1|GE488693 CCFS3731.b1_E22.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS3731, mRNA sequence TGAAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): CACTTACACCGTACACACAAAACCCAAATTTCTTCAGTTTCCTTCATAAAATCTCGTGATCTAACCGCTCAAATTGCTTCAATTCGTCCAAATCTTCAATCAAACAAGTTCAATCGAAGATACATCACAACAATTTCGTGAAATTGGCGCGAGATTGGCGCCAAATTGCAGAATAATACGTGTAAACTGTGTGTGAATTGTGCAAATCGTTTAGGTTAACGTTCGAATGACGGAAATTGGAGTGTTTAGATGGAGAACAGTGTCGGTGATGGTGGTGAACTGTGTGTTGTTAGCGTCGGTGTGTGTTTCTGCTGAAAATGTAACGGCGGTTGCAACAGGTTATTATGGCGGTGATGATGAGCCGAAAACGACGGCGTATTATGTGAAACTGGTGAAGAGTTTGTTTCAGACTGATGGATCTGGTTATCAGCATGTTTGGGCCTGAATGGAATTTGGGTGGAAAATTATTCTGGTAGCTTTATGGGATTTTGTGGAGCCGCATTTGGAAGTGTAGGT | |||||||||
gi|211643747|gb|GE512581.1|GE512581 CCFT8547.g1_F01.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT8547, mRNA sequence TGAAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): GGAAAAACATATAGACATCACATATAATGAATGTAAATACTATACAATGTACTACTAATTTGTCTTACCATACAAAACAATCTCCCTATCAGATGAAATATACTCTCAGAAAGGTTTCATAATCAGAGGAAGTATTTCAGAGCATCAACAACTTTCTCAGGCCAGTCTTCTTGAGGCATATGACCAGCCCCTTCGATTAACTTCAGAGTCACCGCAGACGGGTTTCCTTTTTGAAACTCCTCTGCAATTGACTGAGGAAGATATTTGTCGGATATACCCCACGCAACTAATATCGGTGTATCCCACCTCCCGGATGCAAAGCCATCGGCTATTTGGCTTGAAGTCCCTTTAAAGTTGATCCTTTTGGCAGCTTCAAGCAAAGCAAATCCAGGTCCACTGCTTCTCAGATATGGTAACCGATAAACATCAGCCTTTTCTACCTTCAAGACGTAAGCGCTACCTGCTTCAATAAATCGCTCAGCCATTATTGCATTTTGGCAAGTGAATTCACCAAGCAGTGGAATTCTGAGTTGTTGAAACAGTCCTGGGATAGGAGATGAAACTGTTAAAGGAGTGTTCAACATTACAAGTTTGGATATCCTGCTTGGAATTTTTAAGGCCCATGTTAATCCATAGGAACCTACAAGAAACCCCTGGAACACTAGTGAGAAAGGAGATTTGATCTCCAAGACGTCGAGCAATTATCCAGTTGTTCATGGATTCTTTCTC | |||||||||
gi|211608343|gb|GE484020.1|GE484020 CCFS1322.b1_D19.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS1322, mRNA sequence TGAAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): CGGGACAGATCAAGTCCAATCACCGAATCATAACCAGCACCAAACCTCAATCCAGATCCTGCCATTTCACCGGATCTGATTATAATGAAACCCTCGCCATCCAAATCATTATCTGCATTGAAGAAGATCAATCGGAACAAGTTGTTGTTGTCCTTCGTCGGTCAACCTAGGGTTTGTTGTTCGATCGGCACGGATCATTATGCAGCTACACTTGTCACCTAGTATGAGAAGTATAACGATATCGAGCAGCAATGGATTTTTTGATTTTATGAAGGTTAAGATCGCAGCTCGTCATATTTCCTCCCGAACGCTCTTTCATGCCGTGCTTATTCTCGCTTGCTTGTTGCCGTTTGTCTTCATCGTTACGGCTCTTGTTACTCTTGAAGGTGTCAACAAGTGTTCATCGTTTGATTGTTTAGGCAGGCGTTTGGGACCAAAGCTTCTTGGGAGGGGTGAAGACTCAGGGAGGCTTGTTAACGAACTTTACAAGACCCTTAACCAAGTGAGCTCTGTAGAAGTCCCAAATGACTTAAAGCTCCCTGAAAACTTTACACAGCTTGTCAATGAAATGAAAGACAACAAATACGATGCAAATGAATTTGCTGTTATATTGAAAGGAATGATGGAAAGATCTGAAAAGGAAATTAGAGAATCTAAATTTGCAGAATTAATGAACAAACACTTTGCAGCAAGTTCTGTCCCAAAAGGCATCCATTGTCTCTCTTTGCGGTTACCGATGAGTACTCATCCAACGCACACGCACGCAGACNATTACCTTCACCAGAACTACTTTCAGTTCTATCCGACACTCATACTACCACTTCATCTTGTCACGGACAGCATCTTGGCAGCTTCAGTGTCGTC | |||||||||
gi|22460257|gb|BU024737.1|BU024737 QHF5O02.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHF5O02, mRNA sequence TGAAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): TTGCGGTTGACCCGCTTCTCCTGAGTGGTTCGTCACAATCTCTTCTTCACCAAGTCGAACAACTGGGCCCTACGCCGCACACAAACCTTTCTCAGAACACTAATCTTTCACAAAACACGGTTTCGTTACCACCTTTCCCAGGACCGAACAATGATCCTCAAAGTAATCTTTTATTTGGAGTTAACATAGATAACTCGAATCTTTTTATGCAAGGTGGTGACGGTGGTTCATTGACTATGCCGATGACTTCTTCCACTTATAACGGTAATACAGGAAACGGGTTCTCAGTCAATCCGACAATTACATCTTCAAGTTGTCTTACTGAGTCAGGTTTCCTGCAGTCTCCTGAAAGTGCAGGTCAAACAAACCCACCGACCCGCGCGCTTGTTAAGGTTTATAAGTCAGGATGTTCTGGGTTGTCACTCGATATAGGTAAACTCAGTAGCTATCATGAGCTGAGAAGTGAAGTTGGTCAAATGTTTGGTCTTGAAGGCCAACTGGAGGACCCGTTGAGATCAGGCTGGCAGCTTATATATGTAGACCGGGAGAACGTTCTTCGTCTCCTTGGTGACGACCCTTGGCCGGAGTTTGTAAGCAGGATATGGTGCATT | |||||||||
gi|211648594|gb|GE516900.1|GE516900 CCFU2072.g1_P13.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFU2072, mRNA sequence TGAAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): ACCAAGCCTTATTAATATAATATAACATACCCAAGTGTACTTATACACACATCAAAATGTGCATAAACTGTCCAATAATCATCTCATAAAAACCACCCAGTTGCTACAAAAAGCTTTAAATATGATGACTTTTTGGGACCTTTATTTACAAGACGTCGAAGAAATCAAACTAGAAACAGAAAACCGAGCTTTCAAAGAGTGTACGCATCAACCCTACACGTTCAACGCCAACTTCTGAGCAGCGAGGGCTTCAGCCTCGAGTGTAGGCTCCCACAGGATGGTGGTTTCCGCAAGTAATCCTGTCACTGTATACGGGTCCATGTTTGATGCCGGACGCCTGTCTTCCAAGTAACCTTTGCCTGCTTTCTCAGTGTCACGCCCCACACGGATTGAGCAGCCACGATTAGCTACTCCCCATGAAAATTGGTTAATGCTGGCGGTTTCATGTTTCCCTGTCAATCTTCTTTCGTTTCCTTCTCCGTAAGCACTGATGTGTTCAGTGTGGCGAAGCGAAAGGTTTAGGATCGCCTTTTTGATCACCTCAAATCCACCGTCTTCTCTCATGGCCTTTGTACTGTAGTTAGTGTGGGATCCTGCTCCATTCCAGTCTCCCCTCATGGGCTTAGGGTCAAGTGTCAGGACACACCGGCTTGCTCAGTAATCTCTCAAGAGGATCTTACACCCAAATATGGCTC | |||||||||
gi|90464434|gb|DY926313.1|DY926313 CHAY9837.b1_I12.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAY9837, mRN TGAAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): CGCGGGCAGCCATGTGTCTACGGCGCACCATCAGTTTTTCGACCCCAAGAAAACCAGCGGTGCGGAACACGAAACTTCAAATTTGGATGCACCAAATCAGGGTTTATTCGGTGGGACTAATATCGATTCGACCGGACTTCTACTTCCCGCTACTGTGTCAAACATTGGTACTACATCACCGGAAACCGACTTAACCGCCACCTTGCCTTCAGGGGCTTCGGGATTTCAGAATGCTAATTATTTTGGCTACATGCAAGACTCTTCTGAGTTGTTGCAGCATACGGGACAAATTGACCCACCGAACCCTAACCGTACATTCGTCAAGGTTTACAAATCAGGTTCGGTAGGGAGATCGTTAGACATCACGCGGTTCAACAGCTACCCTGAGCTGAAAGAAGAACTGGGTCAGATGTTTAATATTGAGGGGTTGCTTGAAGACCCTCAAAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGACGTACTTCTCCTTGGAGACGGACCCTGGGAGGCATTTGTAAATAGTGTCTGGTATATCAAGATACTTTCTCCCGAAGATGTGCAAAAACTCGGGAAGCAAGAGTTGGAAAGCTTTAGCCAAAACTCGGGTGAAAGAATTGGAAACGATGGTAGAGACCACTTATCGGGACTTCCTCCATCAATGGGTTCACTTGATTTTTGAGAATAATCAACTCTTTGTGAGAAGTTGCGGGTCCCTTTTTTGTTGTTGTCGTTGTTGCTTTTGGTCAGTTTTGGCCGGTCTTTATGACGTGCTACTTTGTATCGTATATGAGTCGTCTATGATCACATTTAGCTGTATTGTGGTAATTTGTTTAGTAAATGTTAGACAAGATTGAAAACTTTAGAACATATTTGGAGT | |||||||||
gi|22311333|gb|BQ912554.1|BQ912554 QHA21A15.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHA21A15, mRNA sequenc TGAAGCTGCCAGC-ATGATCT EST sequence (targeted fragment marked with yellow): GAATTCGGCCTTATGGCCTGTAGCCGGGATGTTGGTGGCGGCATCACCTGTACAGGTTATCGTTGGCAGCTTCATTGCAGAAGCAAAGAAACCAAAATCTAACGTCGGGCCATCACCAGTTGCACCACCAAACATGTTGAGTTTCGGTGGCGGCAGTGGCGGTGGAGGGGCGGTTCACGGTATAAGTCCTCCACCCGAAGGCGCATCAAGCGAATCTTCTGACGAAAGCGGGAGCAGCCCTCTTCATAGGATCCCGGGCTCCTACAACAACGCTACCCAACACCCACACCAGCACCAACACCAGCAGCAGCCGCAGCAGCAGCCGCCGCCACAGCCGCAGCACATGCAAAATCTTCCGATGTACTCGAACATGGGCTGGCCCAACTCCACCATGAACATGCTACCCAATTAACTACAAATACTAAATTTCCCTACAATAAATCTGACATCATGAGGATGATGGTTGTGGTGGCGGTGGCGGTGGGTGGTGGTTGTAGCGGCAAGTATACAGTTCCTTTCATATGCTAACGCGCATTATGCTTGAAAACAATCTTTTTATATTCCAGATTTCAAAATTTTTCTACCCTTCACTTTGCCTGCGGCTGTGGGTTAGTGTTGAAT | |||||||||
gi|22462693|gb|BU027173.1|BU027173 QHG2d09.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHG2d09, mRNA sequence TGAAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): TTGCGGTTGACCCGCTTCTCGTATCCGGTTCATCACAGTCTCTTCTTCACCAAGTTGAACAGTTGGGCCCACCGTCCCACACGAACCTCTCTCAGAACACAAATCTTTCACAAAGCGCGGTTTCGTTACCACCGTTTCCGGGAAGAGAGTGTTCTATTGATCATGAACCGAACAACGATCCGCAAAGTAATCTTTTATTTGGAGTTAACATAGATAACCCAAATCTTTTTCTTCAAGGTAGTGATGGTGATTCGTTGACCATGCCATTGACTTCTTCTAGTTATAATATAAACAATGTGGGCAACGGTTTTTCGATGAATCCAACAGTGACACCTTCAAGTTGTGTTGACGAGTCGGGTTTCCTGCAGTCTCCTGATAACGCAGGTCAAACAAACCCGCCCAACAGAACGTTCGTTAAGGTTTATAAATCGGGTTGTTTTGGGAGGTCGCTCGATATAGGAAAGTTCAGCAGTTATCATGAACTGCGAAGTGAACTGGGTCAAATGTTCGGGCTTGAAGGCCAATTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGACGTTCTTCTCCTTGGTGACGACCCTTGGCCGGAGTTTGTGAACAGCGTATATTGCATCAAGATATTGTCACCGCAAGAGGTGCAGCAAATGGGTAAACTAGGACTCGAGCTTCTTAACTCAGGTCAGTTACCA | |||||||||