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mature miRNA: TTAGATTCACGCACAAACTCG
species: Helianthus annuus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|90454963|gb|DY916842.1|DY916842 CHAY12680.b1_O01.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAY12680, m 

TTAGATTCACGCACAAACTCG
|||||||||||||||||| ||
AATCTAAGTGCGTGTTTGTGC

EST sequence (targeted fragment marked with yellow):
AAACCAAACCAAACCGGCCGGCTTCTTCTTCTTCAGATCTAACCTCTTCTCTTCAGAACAGCCATATTTCGTGTTTGTGCGTGAATCTAAGGATCCTTAATCTTATCAAATCACCAGTAATCATACTTTTTGTTTGTTTGTTGCCAGACAGGATCTGTTGGTTCGTTAGATTCACGCACAAACTCGTAATATGTCTCTTCATTTGCAACCAATCAAGATTCTTCATGAATTCATCGCCGCCGCCGGAATCTTTGAATCTGGTATGTTTTAACCCTTATGAAGAATCTTTGTTTCTATCTACATATATGCATATACCAGATTTGTTTGATTTTTAATCAGATTTTAGATTTTGATTTTGTGTGTACATGTTTTGGAAATGAAGATTTTTTTTTTTAAATTGGGATTGTTTTAGGCGTGTTTTGATTTCATAGTTGAATTAGGGTTTTGTGTTTTGATATTTGAAAATTGGATGTTTAATTAGATGTGGATGAATAGATTCAATAAGTTGGGATGTATGTACCAAATTAACATATATTTTGCAGAAATTAAAATTGATTGCTTGTAAGTTAAGCAACTTCAATCTGTAGATCGCAACTTGTTCTTGGATGTTCATTCAATCAAAATATAATAAGCAAACCCACTTCAGTGACCAAACACGAGAAAGCGTGCCTTGACAACCAGCACGTGTTTATCCCGTTTGCTTTTGATACTTTTGGTTTTCGTGGACCTACTTAGTCGAGTTCAAAGGGTCATGCACAGTAATGTTATGACCAGGGGCGGTTCTTAGAAGGGCTCCGGCCAGGGGCGGATCTACAAGGAGGTGAGGGGTTTTTAAAAGACTTAGTTTTGCTATTCAAAGGGGTAGCG


gi|22453300|gb|BU017780.1|BU017780 QHE16N10.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHE16N10, mRNA sequenc 

TTAGATTCACGCACAAACTCG
||||||||||||||||||.|
AATCTAAGTGCGTGTTTGGGG

EST sequence (targeted fragment marked with yellow):
TCGAAGTGCCTATACGCATATTAAACATCCTTTCTAAAATGGATTAGCAAAGGGGTTTGTGCGTGAATCTAATGCATTTCGTTCTTTTTCAGTGTGTTTTCTTTGTTTGTGTGTCGAATAAAACCTTGGATAACATCTACAGGTGTCGTTGCCTGTAGTCAAGGTCGGTTTGGTTTGGTTTGGTTTGGTTTGTGTTTAACCTTTTGATTTCCTTGGAGGTTGAAAGGTAGTTTATGTTTTCAGATGTGTGAAACGGTTGATGTTAGCTACTATTTTGTATTGCATTGTCACTATTGTGTGTTAATTATGTTTAAAAATTACTGTTTTGTGTGTTT


gi|211652372|gb|GE516559.1|GE516559 CCFU1506.b1_D18.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFU1506, mRNA sequence 

TTAGATTCACGCACAAACTCG
|||.||.||||||||| || |
AATTTAGGTGCGTGTTAGAAC

EST sequence (targeted fragment marked with yellow):
GAAGTAATGAAAGTAGTTGCAGATGCAGTGAAGGCAATGTCACAGGAAGACATTTTATCTTTTGAAAAAATAGGAGAAATTACTATTGCTAATCACGTCTTAAAGCTCTCTGATATCAAGATTGTGCGTGGATTTAAACGCCCTGATGGCGTGACAGAAGAGCAAATGGATGCAGCTAGTGATGGTGATGTTTTGGTTATCATTGATTTGCAACGTGATGATTCATTGTTGGAAGCTGGATTTGCACGTGAGGTTGTTAACCGAATTCAAAAGCTAAGGAAAAAATCCGCACTTGAACCCACCGATGCAGTGGAGGTCTACTTCAAATCGTTGGATGAAGATGTATCAGTTTCCGCAGAAATGTTAAAATCCCAGGAAGCATACATCAAAGAGGCACTTGGCTCTTCTTTACTCCAGTTTAGCATGATTCCAAAACATGCAGTAATCATTGCTGAGGAGACCTACAAGAACATCTCANATTCTGACTTTCAGATCACTTTGTCAAGAGCAGCATTAGTATTTAATGAGAAAGCAGTCGTCGACTTATACGCAGGGAATACAAAGTATGCACAGGCATTGCAGGTATATCTGTTGTCAAGAGACCACAGCAATCTAAAGTCGGAATTTCAGCACGGAAATGGAAAGATTACGGTGAGCTGCATTGAAAACCAGCCTGCTGTTGATGTGGTCTTGGGAAACACGTGCACTTTGACCGTGGTGATTATTTCGCAGCACAAAAGCTCTGTGATATCATCTTTATACATTTATTTTGGTCATACGAATGCAGCTTTGTC


gi|32535488|gb|CD851672.1|CD851672 DH0ALL17ZC11ZZM1 HaDevR5 Helianthus annuus cDNA clone HaDevR517C11, mRNA sequence 

TTAGATTCACGCACAAACTCG
||||||||||||||||||.|
AATCTAAGTGCGTGTTTGGGG

EST sequence (targeted fragment marked with yellow):
GATTAGCAAAGGGGTTTGTGCGTGAATCTAATGCATTTCGTTCTTTTTCAGTGTGTTTTCTTTGTTTGTGTGTCGAATAAAACCTTGGATAAAATCTACAGGTGTCATCGCCTGTAGTCAAGGTCGGTTTGGTTTGGTTTGTGTTTAACCTTTTGATTTCCTTGGAGGTTGAAAGGTAGTTTATGTTTTCAGATGTGTGAAACGGTTGATGTTAGCTACTATTTTGTATTGCATTGTCACTATTGNGTGATAATAACGGCTTAAAAATTCCCGGGCGGGGGGCGACAAAAAAATACCCCCCCCTTTCAGCCGCGTGCTCGTGTCGCC