| mature miRNA: TTGTAGTGCGTATTTATTTT species: Helianthus annuus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|22470021|gb|BU034501.1|BU034501 QHJ4E19.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHJ4E19, mRNA sequence TTGTAGTGCGTATTTATTTT EST sequence (targeted fragment marked with yellow): GTCAAAACAGGAAGCTAACAAGTCAACCAAGTGAAGCTTTTGTTATACAAGTAGATAGGGTTGATCAATAATTTGGTTGTGAACTCATGAGGATTTAATCCCACCATACATTTCTGAAATGATTTGCAGATTAAATGGTGACTTAAATTTGTAGTTGTTATAATCTGGTACACATTTATTCGATCCGTTTTGTAAAATGGTATGAGAATATCGAACGAGAAAAACAAAAAAAAAACGCACTCCAACACTCAATAACAAAAAAAAAAAAAACAAAAAA | |||||||||
gi|211645921|gb|GE513970.1|GE513970 CCFT9214.b1_L24.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT9214, mRNA sequence TTGTAGTGCGTATTTATTTT EST sequence (targeted fragment marked with yellow): GGCGGGGGCTTTATCTTCCTGCTCGTACGTCCCCTTTTGTCTCTTCTTCGAGGAAATCAAGACGCATTACAACTGAAATGACAAACTGCTGAATAGTATTAAATCGGGTTGACTTTTACCCAGTTGTGCGTTGACTTGGCTTTAAAGAGGCTATCGGATCAATAATTCGAAATATCGCAGCAGATTTTATGAATGGATCAAGATGGAAACACGCTCCCGTATGTCTTCAACCCTCTAGTAAAAACCAGCTGAACGATATGCGCCAACCGGGAGCCATGTCATCACAGAATCCTCCATCAGCTTTTGTTGGTTTGACTGGTCAAAACAATGCAATGTCGTGGGGTCCAGAATCACTCGACGATCTTCTTCGATTTCCCGAAAATGTTGGTGGTGGGAGCTTACAAATCGAGCCTCAAAATGGTTTGCTTCCTGTTGGTGATCGTGATAGGGGAACGGGAACCGACTGGCAGAAATGGGGAGTTGACTTTATGAGCGTTGATGTTAATATTGACTCGAATTGGAGCGAAATTTTGGCTGATGTTGATGCTCCAACTCTAGAATCCAAGCCATTGNCAATCACTCTTCCTGTTCTTGGGCCAAGTATAGAAGCATGTCCAGTCAGCAGCCCGTCATCAACTGGGCCCGTTAAACCTCGCATGCGTTGGACGCCAGAACTCCATGAATCCTTTGTTTGAACAGTCAACAAGTTGGGTGGCAGTGAACGAGCTACACCTAAGGGTGTTTGGAGCTCAGGAACGTGACGGTTTGACGAT | |||||||||
gi|28370416|gb|AJ540113.1|AJ540113 AJ540113 HaSemS3 Helianthus annuus cDNA clone HM0009H0, mRNA sequence TTGTAGTGCGTATTTATTTT EST sequence (targeted fragment marked with yellow): ACTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTAAAAATAAATACGCACTACAAATCAAGCAAAGGGCTTTTAGTAATGAGCATATCTAGAGAATACAAGAAGAATTACAAACAATAATAATCTTATTGCAACACACAACAGACAACACGAAAATTTCCCATTTCTACTTTTGCCTCTTGTATATCTTTCCTAAGAAAGATTTCAACACCGCTTGCACCGCTTTGCTTGGATGACCTTCGATGGAAGTGATCAGCTTCTTGTAGCTTGCGTTCTCGT | |||||||||
gi|211624538|gb|GE501895.1|GE501895 CCFT3023.g1_N12.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT3023, mRNA sequence TTGTAGTGCGTATTTATTTT EST sequence (targeted fragment marked with yellow): TTTTGTTGTCCTTATTTTTTTGCGCGGGATTGGAGTTATCACGGAACAAAAACCTTTGAATGCCATACATTTTTTTTGCAAGTAAAAATAAATACGCACTACAAATCAAGCAAAGGGCTTTTAGTAATGAGCATATCTAGAGAATACAAGAAGAATTACAAACAGTAATAATCTTATTGCAACACACAACAGACAACACGGAAATTTCCCATTTCTACTTTTGCCTCTTGAATATCTTTCCTAAGAAAGATTTCAACACCGCTTGCACCGCTTTGCTTGGATGACCTTCGATGGAAGTGATCAGCTTCTTGTAGCTTGCGTTCTCGTACTCTTCGAATACACCCTGAAGATTTAGAGGGTGGTATAGTTCCTTCACCTTTGCAACTGAAGAGGGATCTTTTTTCCCATAGTTCTCATGTAGGAATTTCTTTTGTTCCTCATTGGAAAGTTCCAAAGCTTTCACAACTAACCAGGAGCACTTAAAGTCTTCAATGTCTGTTCCAATCTTTCCAATAACCTCAGGAGCACCAAAACAGTCTAGATAATCGTCCTGCACTTGAAAATAGGTACCCATTTCAACAAGTACGTTCTTCACTTCCTCGTGTTTGTCCCAATCCTCACCAGACATAAGGAGTGCACAGGCCACTGGGAGAATAAATGAGTAGTAAGCAGTTTTGTACTGAACAATCCGGCGTGAATAGACAATGAATACTCGATAGATCTTCTCTCAACAGTGTAGTAATCAATTATCATTGTCCGAGGTGTTTAA | |||||||||
gi|211621666|gb|GE496573.1|GE496573 CCFS7550.g1_K16.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS7550, mRNA sequence TTGTAGTGCGTATTTATTTT EST sequence (targeted fragment marked with yellow): AACTAAAACAAGTCTTTGAACCTAAGCCTATTAAATCTTTTAAAACAAGCAATAAGGCAATCCAAACAAAGTTTATACGCGCTATAACATATTACCATACACCAACAAACAGACCTATCTAAACCTCCTAGGTTTCTTGTTTCGACTACTACTCTGAGGTGTACGGTTTTCCGGCTTGCGTTTCACACCTCCACTGCCGCCATCACCGCCAGTTCTAGCTGCGTTTGCTGCCGCCTTTCTAGCAGCAACCGGGGGCCTTTTTTCTGACCGCACTTGGGGGTTCACTGTTTTTTCACTTCCTGATTCACTCCTGCCAGGTTTAGCTACTCTCGTAGCAAACTTCTTCTGGCCGCCGGATTTGGAGGCACGGATTCCCTGGTACGAGGTGCTGCCGCTTGCAGCCGCCTTCTTAGAAAAACCGTAATTGTCGGGGGATGATGGTTCCTTCCGATTAGAAGGGGTTGAATTCCAGTTTGGTTTCGTGGCATGGGATAACCTTAACTCCCTGCCCCGAATCTTCAGATTGTGGTT | |||||||||
gi|211640823|gb|GE508034.1|GE508034 CCFT6023.g1_M18.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT6023, mRNA sequence TTGTAGTGCGTATTTATTTT EST sequence (targeted fragment marked with yellow): GGATGCATTACATTTTTTTTAAAATTAAAAATAAATACGCACTACAAATCAAGCAAAGGGCTTTTAGTAATGAGCATATCTAGAGAATACAAGAAGAATTACAAACAATAATAATCTTATTGCAACACACAACAGACAACACGAAAATTTCCCATTTCTACTTTTGCCTCTTGTATATCTTTCCTAAGAAAGATTTCAACACCGCTTGCACCGCTTTGCTTGGATGACCTTCGATGGAAGTGATCAGCTTCTTGTAGCTTGCGTTCTCGTACTCTTCGAATACACCCTGAAGATTTAGAGTGTGGTATAGTTCCTTCACCTTTGCAACTGAAGTGGGATCTTTTTTCCCATAGTTCTCATGTAGGAATTTCTTTTGTTCCTCATTGGAAAGTTCCAAAGCTTTCACAACTAACCAGGAGCACTTAAAGTCTTCAATGTCTGTTCCAATCTTTCCAATAACCTCAGGAGCACCAAAACAGTCTAGATAATCGTCCTGCACTTGAAAATAGGTACCCATTTCAACAAGTACGTTCTTCACTTCCTCGTGTTTGTCCAAATCCTCACCAGACATAAGGAGTGCACAGGCCGCTGGAAGATAAAATGAGTAGTAAGCAGTTTTGTACTGAACAATCCGGCGGTGAATAGACAATGGATACTTCGATAGATCCTTCTCT | |||||||||
gi|211642586|gb|GE513068.1|GE513068 CCFT8780.g1_H12.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT8780, mRNA sequence TTGTAGTGCGTATTTATTTT EST sequence (targeted fragment marked with yellow): CCAAAACAAACATAATACGCATTACAAATCCCAATCATCCAAATTATGACAACCACACTTTATACAACCGGACTTCCCAACACAATTTCCATAAACCCATATACATCCCCAACAATCAAACAAGCAAAAATATAACAAGCAGATAATCATCTGATGCAACAGTAAAACGATCATTAAAAGCTTAGACTGATGGAAAATATCACGAATTTTCTATTTAACGCTTGGAATTTTCCAATTACCAAGAGGTCCCCGTATCGTCTAAGATCACCTGTGAAGAACGGGAGCCGTAAAGCTTCCCTGGCCGTGAACCTTTCTGCTGGGTCAGAAATCCCAAGATCCCCTGCTAGATGGCTATCAAATCCCCAGCAGAATGGTCCAAATGCTGGCATTACCAACTTCTTCAGGCCTGGAAGTTTCCACACAGCCCTCATTATTTCTCTTGAAGC | |||||||||
gi|211645698|gb|GE513643.1|GE513643 CCFT9056.g1_O08.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT9056, mRNA sequence TTGTAGTGCGTATTTATTTT EST sequence (targeted fragment marked with yellow): GCAGTTAAAACAAAACAAAAACCTTTGAATGCATTACATTTTTTTTAAAATTAAAAATAAATACGCACTACAAATCAAGCAAAGGGCTTTTAGTAATGAGCATATCTAGAGAATACAAGAAGAATTACAAACAATAATAATCTTATTGCAACACACAACAGACAACACGAAAATTTCCCATTTCTACTTTTGCCTCTTGTATATCTTTCCTAAGAAAGATTTCAACACGCTTGCACCGCTTTGCTTGGATGACCTTCGATGGAAGTGATCAGCTTCTTGTAGCTTGCGTTCTCGTACTCTTCGAATACACCCTGAAGATTTAGAGTGTGGTATAGTTCCTTCACCTTTGCAACTGAAGAGGGATCTTTTTTCCCATAGTTCTCATGTAGGAATTTCTTTTGTTCCTCATTGGAAAGTTCCAAAGCTTTCACAACTAACCAGGAGCACTTAAAGTCTTCAATGTCTGTTCCAATCTTTCCAATAACCTCAGGAGCACCCAAACAGTCTAGATAATCGTCCTGCACTTGAAAATAGGTACCCATTTCAACAAGTACGTTCTTCACTTCCTCGTGTTTGTCCAAATCCTCACCAGACATGAGGAGTGCACAGGCCCACTGGAGATAAAATGAGTAGTAAGCAGTTTTGTACTGAAACATCCGGCGGTGGATAGACAATGGATACTTCGATAGATCCTTCTCTCCAACGAGGGGAGTAATCAAATCTATCATTTGTCCGAGGCTGTTTGAAAT | |||||||||