miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CTGACAGAAGAGAGTGAGCAC
species: Helianthus argophyllus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|113193061|gb|EE626080.1|EE626080 CHWS4433.b1_A06.ab1 CHW(LMS) silverleaf sunflower Helianthus argophyllus cDNA clone CHWS4433 

CTGACAGAAGAGAGTGAGCAC
 ||||||||||||| |||||
CACTGTCTTCTCTCCCTCGTA

EST sequence (targeted fragment marked with yellow):
CGGGGTCCCAACATTTCTTTGAGATAGTGAGTGAGTTGATGGGGTGTGGTGGTGAAGATGGTGTTGGTGTTGGTGGAGGAGGAAGTTGTTTGAATGTGGATGTGAAGAAGAAGAAAGCATGTCACACTGGCGGTGGATCGTCTAGTGTAGCGCGGTGCTGCCAGGCGGAGAAATGTACGAGTGATTTAGCCGAGGCCAAGGCGTATCATCGAAGGCACAAGGTGTGTGAGTATCATGCAAAGGCTCAAGCAGTTGTTGTTGCCGGTATGCACCAAAGATTTTGTCAGCAATGTAGCCGGTTTCACGAGCTATCGGAATTTGATGAAGCGAAAAGAAGTTGTAGGAGGCGTTTAGCGGGGCACAATGAAAGGCGAAGGAAGAACAACTCACTGGAGTTCAAGAAGGAACTTGTTTGTGTGCACAGCCAAAGGTTTAACCAAGAGAATCCAACTTAAACCAGATGGAAAACCTAAATAAAGGAATCTATGCTCCCTCTCTTCTGTCACTTCCTATCCTAGTACTTCAAAACTCTTGTAGTTCTAATAATGTTGTTGTGTTTGGTAATGAANGTAATGTATAATTATATTCTTGTTTGACTAACCAATTCAAGAATATAGTTTGACTTTCCCTAAGTCAAAATACTGAATAAAACATAT


gi|113187463|gb|EE625630.1|EE625630 CHWS4022.b1_L21.ab1 CHW(LMS) silverleaf sunflower Helianthus argophyllus cDNA clone CHWS4022 

CTGACAGAAGAGAGTGAGCAC
 ||||||||||||| ||||||
AACTGTCTTCTCTCTCTCGTG

EST sequence (targeted fragment marked with yellow):
GGTTAGAAATTGATCTCCATTCTCATTACCGCAACCCAAACACTACCTTAATTTTACCATGGATCTACCAAATTTTTTCAACAGTTTTGGTCAATTTTGTTATACTTTTTATCATCTGATAATTGTTTTCAATGATTGGCGTAGATTTCACAGTTTGGCAGAATTTGATGAGAAAAAACGCAGCTGTCGTAGACGGCTTTCTGATCATAATGCAAGACGCCGCAAGCCACGGCAGGAGACAATCCAGTTTAATTCAACAGACCTGTCTTCATCATTTTATGGTGTGCGACAACAATTGAGCTTTCAATCTAGACCTGCTGTAAGTTCGACATGGAAAAATTCATCGAACTCAACATACTCGATAGCCACAATGAAAACCAAACAGTCTGGAATCCTTGATGGCATATCACAGTTGCCAAACACCGGCAATATACCTACGATTTCATTCAGTAGACCAGTGCCATCAAAGGGCACAAGCGGCGAGGTTCTTGATCAAGGTTTTAAGGAGTCCTTGTCTCCCAATGTAGATGCACTACGTGCTCTCTCTCTTCTGTCAAACAATTCTTGGGGTCTATATGAGCCCGATTTAATCAGGCTCGACCAACCCCACCCCATGGGCTCTGATAACCCGTTCATGGTGCAACCTGGCTTGCAAACTGTTCCCCAAGGTTTGCCACTTTCATCATCTGATTACTGGCAAACCGATCAACACTCAATTGACCCCA


gi|33129626|gb|CF090559.1|CF090559 QHM5E18.yg.ab1 QH_M sunflower H.argophyllus Helianthus argophyllus cDNA clone QHM5E18, mRNA s 

CTGACAGAAGAGAGTGAGCAC
|||||||||||||| ||||
GACTGTCTTCTCTCCCTCGCA

EST sequence (targeted fragment marked with yellow):
GTGTTGGACTCGGGAATTCGGCCATTACGGCCGGGGGCATCGAGGGAGGGAGGGTATGGACGATAAGTTTATAAATGAGATGATGGAAGAATGGATAGAGGATGATGATCATGATAATGATGATAGGAAAAAGGGTATAATGGGAAAGAAGAGTTCTAGTAGTAGTAGTAGTGGTAGCTTTTGCCAGGTGGAAGACTGCTCAAGTGATATGAGTCGAGCCAAAACATATCATCGGAGACACAAAGTATGTGAGTTTCATGCTAAGGCTCCAATCGTTGTCATTAGTGGACGCCAACAACGTTTTTGCCAGCAATGCAGCAGGTTTCACGACTTAACTGAATTTGATGATGCCAAAAGGAGTTGTCGTAGGCGCTTAGCTGGACACAACGAACGCAGGCGTAAGACCTCCTATGGAGAAACTTCTGGTTAACGATAATGATAACGATAATATTATTATCGCCTAATAAGAAATATATGTCCGGTAGCAGTAGCGGTAGCCACGCTCCCTCTCTTCTGTCAGTCCCTAAATATATTATCTATTTCGATGCATGGCCATACTTGTACTAAATAACGCAATGCTAATAAATTAAAGAAACCTTCCAGTTATTTATGTTCTAAAAAACAAACCCNCAC