| mature miRNA: GACAGAAGAGAGTGAGCAC species: Helianthus argophyllus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|113193061|gb|EE626080.1|EE626080 CHWS4433.b1_A06.ab1 CHW(LMS) silverleaf sunflower Helianthus argophyllus cDNA clone CHWS4433 GACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CGGGGTCCCAACATTTCTTTGAGATAGTGAGTGAGTTGATGGGGTGTGGTGGTGAAGATGGTGTTGGTGTTGGTGGAGGAGGAAGTTGTTTGAATGTGGATGTGAAGAAGAAGAAAGCATGTCACACTGGCGGTGGATCGTCTAGTGTAGCGCGGTGCTGCCAGGCGGAGAAATGTACGAGTGATTTAGCCGAGGCCAAGGCGTATCATCGAAGGCACAAGGTGTGTGAGTATCATGCAAAGGCTCAAGCAGTTGTTGTTGCCGGTATGCACCAAAGATTTTGTCAGCAATGTAGCCGGTTTCACGAGCTATCGGAATTTGATGAAGCGAAAAGAAGTTGTAGGAGGCGTTTAGCGGGGCACAATGAAAGGCGAAGGAAGAACAACTCACTGGAGTTCAAGAAGGAACTTGTTTGTGTGCACAGCCAAAGGTTTAACCAAGAGAATCCAACTTAAACCAGATGGAAAACCTAAATAAAGGAATCTATGCTCCCTCTCTTCTGTCACTTCCTATCCTAGTACTTCAAAACTCTTGTAGTTCTAATAATGTTGTTGTGTTTGGTAATGAANGTAATGTATAATTATATTCTTGTTTGACTAACCAATTCAAGAATATAGTTTGACTTTCCCTAAGTCAAAATACTGAATAAAACATAT | |||||||||
gi|113187463|gb|EE625630.1|EE625630 CHWS4022.b1_L21.ab1 CHW(LMS) silverleaf sunflower Helianthus argophyllus cDNA clone CHWS4022 GACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GGTTAGAAATTGATCTCCATTCTCATTACCGCAACCCAAACACTACCTTAATTTTACCATGGATCTACCAAATTTTTTCAACAGTTTTGGTCAATTTTGTTATACTTTTTATCATCTGATAATTGTTTTCAATGATTGGCGTAGATTTCACAGTTTGGCAGAATTTGATGAGAAAAAACGCAGCTGTCGTAGACGGCTTTCTGATCATAATGCAAGACGCCGCAAGCCACGGCAGGAGACAATCCAGTTTAATTCAACAGACCTGTCTTCATCATTTTATGGTGTGCGACAACAATTGAGCTTTCAATCTAGACCTGCTGTAAGTTCGACATGGAAAAATTCATCGAACTCAACATACTCGATAGCCACAATGAAAACCAAACAGTCTGGAATCCTTGATGGCATATCACAGTTGCCAAACACCGGCAATATACCTACGATTTCATTCAGTAGACCAGTGCCATCAAAGGGCACAAGCGGCGAGGTTCTTGATCAAGGTTTTAAGGAGTCCTTGTCTCCCAATGTAGATGCACTACGTGCTCTCTCTCTTCTGTCAAACAATTCTTGGGGTCTATATGAGCCCGATTTAATCAGGCTCGACCAACCCCACCCCATGGGCTCTGATAACCCGTTCATGGTGCAACCTGGCTTGCAAACTGTTCCCCAAGGTTTGCCACTTTCATCATCTGATTACTGGCAAACCGATCAACACTCAATTGACCCCA | |||||||||
gi|33129626|gb|CF090559.1|CF090559 QHM5E18.yg.ab1 QH_M sunflower H.argophyllus Helianthus argophyllus cDNA clone QHM5E18, mRNA s GACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GTGTTGGACTCGGGAATTCGGCCATTACGGCCGGGGGCATCGAGGGAGGGAGGGTATGGACGATAAGTTTATAAATGAGATGATGGAAGAATGGATAGAGGATGATGATCATGATAATGATGATAGGAAAAAGGGTATAATGGGAAAGAAGAGTTCTAGTAGTAGTAGTAGTGGTAGCTTTTGCCAGGTGGAAGACTGCTCAAGTGATATGAGTCGAGCCAAAACATATCATCGGAGACACAAAGTATGTGAGTTTCATGCTAAGGCTCCAATCGTTGTCATTAGTGGACGCCAACAACGTTTTTGCCAGCAATGCAGCAGGTTTCACGACTTAACTGAATTTGATGATGCCAAAAGGAGTTGTCGTAGGCGCTTAGCTGGACACAACGAACGCAGGCGTAAGACCTCCTATGGAGAAACTTCTGGTTAACGATAATGATAACGATAATATTATTATCGCCTAATAAGAAATATATGTCCGGTAGCAGTAGCGGTAGCCACGCTCCCTCTCTTCTGTCAGTCCCTAAATATATTATCTATTTCGATGCATGGCCATACTTGTACTAAATAACGCAATGCTAATAAATTAAAGAAACCTTCCAGTTATTTATGTTCTAAAAAACAAACCCNCAC | |||||||||
gi|125486349|gb|EL515132.1|EL515132 CHWZ456.b1_O17.ab1 CHW(XYZ) silverleaf sunflower Helianthus argophyllus cDNA clone CHWZ456, GACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GTAATAACTCTATCCCAAAATCCTGGAGAGTTGTTCTCTCTCTTCTCTCTCAGGTGTTAAGATGATCAGACTCCCATCCAATGGTGGGATCCCATTTCTTCAACTTGATCTATATTTACAGTTTCACTCACATGACCCTCCCTCCCTTTGTGTGAAACGAATCTTATAGATGATGAGGGAAACAAGTAGACGCATTTCTGATTGGTGGAATCTCTATTCAAGAAAGACTCCAATGCTCACTACCAATTTCATCTTTATCCACCAAGGTCTTTTTCTATTATTAGATTTTATATTTTTACTAGTAGTTTCAAGATTTGGTACATCACAATTCATGTTTTAAGTTTTGTGCACACCAAGTGTTTGTGTTAATTTGTTACTGTGTTTGTTTTCTGATTTTAGTAATATGTTGTGTTGTGGTTTG | |||||||||
gi|33137722|gb|CF098655.1|CF098655 QHN8A03.yg.ab1 QH_N sunflower H.argophyllus (drought stress) Helianthus argophyllus cDNA clon GACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): TTCCCAAGTGTGGCCTCAGAGTTGGCCTTGCACCGAGTAAGGAACGCCTCCTGAGCCTTGTTCACATTCTCTTCTTTCCCGCCCCATGCCTTGAGGGTGCTCTGTTGCAGGGCGCGCCCGAACGAGAAGGTTAAGCTCCACGGCTTCTTACCCTGGTACTGGTTGATAGCATTCAGGTGCACCGTGGCTTCCTCCTCACTTTGACCCCCTGACAAGAACACCACTGCTGGGACCGCTGCAGGCATGGTTCGTTGGAGGGCACGGACGGT | |||||||||
gi|113181755|gb|EE614224.1|EE614224 CHWM1655.b1_N05.ab1 CHW(LMS) silverleaf sunflower Helianthus argophyllus cDNA clone CHWM1655 GACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GAGGGAAATGTAAACAATCTAAAACTACAAGGCCATAAAATGTAAATAAACATAAGTCTAAGGGCATATATAAAACATAGCAAAATATAAGACCATCTGTGCTACTCTCTTCTTTCTCACTTGTGTGGAGGAAAACACAACTCAAAAACTGTGCAACAACAAGCACACACAGGAACAACATCAACAATGGCGATTCGCATCAATACGGCGACGTTTCAATCAGACCTGTACCGTTCATTCGCGTTTCCTCAACCGAAACCTCTCAGATCTCCCAAATTCGCCATGGCTTCCACCATTGGATCCGCTACAACGAAGGTTGAAAGCACCAAAAAGCCCTTTACCCCTCCAAGGGAGGTTCACCAACAGGTGCTACACTCAATGCCGCCACAAAAGATCGAAATCTTCAAATCCATGGAGGGTTGGGCCGAAGATAACATATTGGTTCACCTAAAGCCCGTCGAAAAATGCTGGCAAGCACAGGATTTCCTACCAGATCCCGCATCTGAGGGATTTATGGAACAAGTGGAGGAATTACGGGCTCGGGCTAAGGAGATTCCGGATGATTACTTTGTTGTTTTGGTTGGAGATATGATTACTGAAGAAGCACTGCCTACTTACCAAACAATGCTTAATACTCTTGATGGTGTGCGTGATGAGACCGGGGCTAGCCCTACTTCTTGGGCTATCTGGACTCGGGCTCGGACCGCTGAAGAAAACAGGCACGGTGATCTTCTACATCAGTATCTGTATCTTAGTGGGCGGGTCGACATG | |||||||||
gi|33131850|gb|CF092783.1|CF092783 QHN12L10.yg.ab1 QH_N sunflower H.argophyllus (drought stress) Helianthus argophyllus cDNA clo GACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): TTGTAGTCCTTAACATGAAGGCTCTCAGTAGCACCCTCAACTGCAGCACCGCCCTGGTACTTCCCAAGTGTGGCCTCAGAGTTGGCCTTGCACCGAGTAAGGAACGCCTCCTGAGCCTTGTTCACATTCTCTTCTTTCCCGCCCCATGCCTTGAGGGTGCTCCGTTGCAGGGCGCGCCCGAACGAGAAGGTTAAGCTCCACGGCTTCTTACCCTGGTACCTGCCCGGCGGCCGCTCGAA | |||||||||
gi|113187334|gb|EE625375.1|EE625375 CHWS3783.b1_N10.ab1 CHW(LMS) silverleaf sunflower Helianthus argophyllus cDNA clone CHWS3783 GACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CGGGGGAGAGGACGTTGTTCTTCCTACTGGTGGTGACTCTATTGTTGCTAGCCTTGCTGCTGCACCTGCAGCCGCACAAGCTGTGGAGGAGGCTGCAGAGACCGTGAAAGTTGACAGTGAGAAGAAGAAAAAGAAGAAGAAGAAGGACAAGGATGACGAAGACGGTGATGCAGGGGTTAAACGTAAGTTAGACGGCTTAGAAGTTGAAGAAACACCGGTGCCCAAGAAAAAGAAGGTTGAAGCAGAAGAGGAGGAGAAGGCGGAAGGTGAGACGACAGAGAAGAAGAAGAAAAAGAAGAAGAAAGATGGGGATGCACCTGAGAACGGAGATGGGGATAAATCCGAAAAGAAAAAGAAATCTAAAGACGCCGAAGATGGTCAAGAAGCAAGCAAAAGTGAAAAGAAAAAGAAAAGTAAAGAAGCTGAAGATGGTCGAGAAGTAAGCAAAAGTGAGAAGAAGAAGAAAAAGAAGAAAGATGCGGAGGAAGAGTAGTTATAATAAGACGGATTCATGAATTTTCAAGTTGAGCTTCGAAGTTCCTGAATTAATGGCTCCATTCCATTAGTTGCTGGAGATAACCACCAGTTTCAGGCAGCAATTCTTTTCGAGTTGAATGTCTATGTTTTCTCTTTTCTGTCTTGTTTAAGGTGCTATGTGTTTTTTATATGTTTGTAAGGATTTGACTCTACTAGAGTTNTGAAATTTTTGTAGTTTCTTGTT | |||||||||
gi|113179989|gb|EE610429.1|EE610429 CHWL6027.b1_E20.ab1 CHW(LMS) silverleaf sunflower Helianthus argophyllus cDNA clone CHWL6027 GACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): ACAAACAATGCAATCCAGCACAAATGGATTCAATCGTTCATCTACCTAACCCTAATCACAATCTCACTCAATCTGCTACATATTTTCCTTCTATCCGACAGATTAATCATCTCTCATCACAAAATTACACTCAAGAAGCATCCTGATCTTCCTCTACGCTTCAATTCAGACGGAACCTTCAAGATCCTTCAGGTAGCCGATATGCATTACGGAACCGGATTGACTCGGTGTAGAGATGTTTTGAGCTCTGAGTTTGACTCGTGTTCCGATCTTAACACAACTCGGTTTTTGAAGCGGATGATTGAGGCTGAGAAGCCGGATTTTATTGCCTTTACAGGTGATAACATATTTGGGTCAAGCACTAATGATGCGGCTGAGTCACTATTCAAAGCTTTTGGTCCAGCAATGGATTCCGGGCTTCCATGGGCAGCGGTTTTGGGCAATCATGACCAAGAATCAACTATGACCCGTGAAGAACCGATATCATTCATCTCCCTGATGGATTATTCGCTTTCACAACCCAACCCGTTAACTCAAGATCCCACAGACCCTACTAAACAACAAATTATGACAGAAATCGATGGGTTCGGGAACTATGATCTCAGTGTATGGGGTCCCCCAGGGTATCAGTCGGCCAACCAGACCGTATTCAATCTCTTCTTTCTAGACAGTGGGGACAGAGCTGTTGTTGATGGGTTTAGAACGTATGGATGGATCAAGGAGTCTCAACTTGATTGGCTACGTGGTGTTTCTAAGGGACATAACCAAGAAAACCATCAATCACAAGAGATTCCATCACTAGCATTCTTCCATATCCCGATCCCAG | |||||||||