| mature miRNA: GCTGCTGTTGTTGCAGTAGGA species: Helianthus argophyllus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|113173141|gb|EE608492.1|EE608492 CHWL3883.b1_E11.ab1 CHW(LMS) silverleaf sunflower Helianthus argophyllus cDNA clone CHWL3883 GCTGCTGTTGTTGCAGTAGGA EST sequence (targeted fragment marked with yellow): GGGGGAGCAGAACCGAAGAAAACCTCTTGTATCCGATTTTGGGTTCTGAAATGCTTTTCTGCTTCTTCAATTCATTTGTGACATAATTCTTCTTCACGGGGTTTGTTGAATCAAGAGATGTCGAGTAATACAGCAACAGCAGCAGCAGCAGAAAGGGCAACAAGTGATATGCTGATCGGTCCAGATTGGGCTATTAATATTGAGCTGTGTGATGTTATTAATATGGATCCTGGGCAAGCAAAAGATGCTCTGAAGATACTGAAGAAACGGGTCGGGAACAAAAATCCAAAAATTCAGCTTCTGGCTCTTTTTGTTTTGGAAACTCTGAGTAAAAACTGTGGAGAGAACGTGTTTCAGCAGATTGTTGAGCGCGACATTTTGCATGACATGGTTAAAATCGTAAAGAAAAAGCCAGATTTAAATGTCCGGGAAAAGATTCTTATCCTGATTGATACTTGGCAAGAAGCTTTAGGTGGGCGTGGGGGAAGGTATCCCCAATACTATGAAGCCTACAATGAACTCAAGTCTGCGGGAGTGTATTTTCCGCCAAGAGAAGAGAACAGTGTACCACTGTTTACACCACCGCAAACCCACCCTGTTACTTCACAGTATGAAGAAGCAGCTATTCAGGCATCCCTTCAGACTGAGGCTTCTGGACTCAGCTTGTCAGAAATTGTAAATGCACAAGGAATAGCTGATGTCTTAATGGACATGCTTAATGCGTTGGATCCCAAGAACCGTGAGGGGGTAAAAGAAGAATTGATTGTTGACCTTGTTGACCAGCGTCGTTCTTACCAAGAACATGTCATGACCCTCGT | |||||||||
gi|113186785|gb|EE624280.1|EE624280 CHWS2300.b1_H24.ab1 CHW(LMS) silverleaf sunflower Helianthus argophyllus cDNA clone CHWS2300 GCTGCTGTTGTTGCAGTAGGA EST sequence (targeted fragment marked with yellow): AGGAGTGCAGGTGGAGACATTGGCTCCAACAACAAGGCATTATAGAAGTGTTTCAATGGATAGTTTTATGGAGAGGATGAACTTTGGTGATGAATCACCGAAGCTCCCTCCTTCCCCTGGTGGTCAACTTGGTCAACTCTCTCCTAATAATTCTATCGACTCGAATTCAAATACGTTCAGTTGGAGTTCGGGAATGGTGAGTTTACTGGAGCTGAACTCAAGAAAATTATGGCTAATGAGAAACTTGCTGAGATAGCTCTAACCGATCCAAAACGAGCCAAGAGGATCTTGGCTAATAGACAATCTGCTGCTCGATCAAAAGAACGGAAAATGCGTTACATTACAGAACTAGAACACAAGGTTCAAACTTTACAGACCGAAGCAACGACACTATCTGCACAACTTACCTTATTGCAGAGGGACTCGGCTGGGCTCACAAGTCAAAATAACGAGCTAAAGTTTCGTCTGCAAGCTATGGAACAACAGACACAGCTTCGAGACGCTTTAAACGAGGCTTTGACTGCCGAAGTTCATCGTTTGAAAATGACTACCGCTGAACTAAGTGGGGATGCTGCTAAGTTTGCTCAACTCTCAATCAACCCGCAAATGTTCCAGCTACAGCAACAGCAGCAGCATGCTCATCAAATGCAACACCAGAACCAGCAAAACGGCGGTGCCGCCACCAAATCCGATTCANACCAGTAGGGGCCGGTGGGTCCTAGTAACCT | |||||||||
gi|113192862|gb|EE625679.1|EE625679 CHWS4067.b1_E10.ab1 CHW(LMS) silverleaf sunflower Helianthus argophyllus cDNA clone CHWS4067 GCTGCTGTTGTTGCAGTAGGA EST sequence (targeted fragment marked with yellow): CGGGGGCGCCAAGGTATCTATCCAGCAGTGGATCCTTTAGATTCAACGTCAACTATGCTACAACCCCGGATCGTTGGTGACGAACATTATGAAACTGCACAACAGGTTAAGCAAACTTTACAACGTTACAAAGAACTTCAAGATATTATAGCTATTCTTGGATTAGACGAATTATCCGAAGAAGATCGTTTAACCGTAGCAAGAGCGCGAAAAATTGAGCGTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTATTTACGGGTTCTCCGGGAAAATATGTTGGTTTAGCAGAAACAATTAGAGGCTTTCAATTAATCCTTTCCGGAGAATTAGATAGTCTTCCCGAACAGGCCTTTTATTTGGTAGGTAACATCGATGAAGCTACGGCGAAGGCTATGAACTTAGAAATGGAGAGCAATTCGAAGAAATGACCTTAAATCTTTGTGTACTGACCCCTAATCGAATAGTTTGGGATTCAGAAGTGAAAGAAATCATTTTATCTACTAATAGTGGACAAATTGGCGTATTACCAAATCACGCTCCTATTGCCACAGCAGTAGATATAGGTATTTTGAGAATACGCCTTAACGACCAATGGCTAACGATGGCTCTGATGGGCGGTTTTGCTAGAATAGGTAATAATGAAATCACTGTTTTAGTAAATGATGCAGAGAAAAGTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATATCAGAAGCTGCTTTGAGAAAAGCT | |||||||||
gi|113188004|gb|EE626717.1|EE626717 CHWS5020.b1_G07.ab1 CHW(LMS) silverleaf sunflower Helianthus argophyllus cDNA clone CHWS5020 GCTGCTGTTGTTGCAGTAGGA EST sequence (targeted fragment marked with yellow): GAGCCAGAGGATCTTGGCTAATAGACAATCTGCTGCTCGATCAAAAGAACGGAAAATGCGTTACATTACAGAACTAGAACACAAGGTTCAAACTTTACAGACCGAAGCAACGACACTATCTGCACAACTTACCTTATTGCAGAGGGACTCGGCTGGGCTCACAAGTCAAAATAACGAGCTAAAGTTTCGTCTGCAAGCTATGGAACAACAGACACAGCTTCGAGACGCTTTAAACGAGGCTTTGACTGCCGAAGTTCATCGTTTGAAAATGACTACCGCTGAACTAAGTGGGGATGCTGCTAAGTTTGCTCAACTCTCAATCAACCCGCAAATGTTCCAGCTACAACAACAGCAGCAGCATGCTCATCAAATGCAACACCAGAACCAGCAAAACGGCGGTGCCGCCACCAAATCCGATTCAAACCAGTAGGGGCCGGTGGGTCCTAGTAACCTTATGGTGCTGAGCTTGTTCATACTATCACCATGATGTCGTCTTAATATATATCACCGGTGCATTCGTTCATTACTTTTTTGTGTCTTTTGGCATGGCTTCTGCTAGCAACTTCTAATGTATTCTATCGAGATTTCTAGTCATTTATTTTACGAAAAA | |||||||||
gi|113174255|gb|EE610663.1|EE610663 CHWL6592.b1_O15.ab1 CHW(LMS) silverleaf sunflower Helianthus argophyllus cDNA clone CHWL6592 GCTGCTGTTGTTGCAGTAGGA EST sequence (targeted fragment marked with yellow): TGAGGAGGGAAGGAAGGAAGGATCCCCAAATCAAGTCAGGATCCACGGCAACTCAAATAAAATAAAACCAAACCAGAGAGAGATTGGATTCATGTCTTCTCCAATTCCTCCTCAGGTGATTTCAATTCAATTCAATTCCTTCGAATAAACGCCAACTGACTCACTGCATATTGTTTGTTTGTTTTAGATCCAGTGCTAGAATAGAAATAATTGATTGGATGAAAGGAGGAGGGGAAGGGTGGTTGTTGTATGAATGGAGGAGAAGGAAACAGCTTTCTCTCTTGTTTATCTTTCTTCTTCTTTCTACAACTTTTATTCTTTGGTCTTCTTGGGGCCCAAACACCTCCTTTCTCACCACAATCTCCTCCTCCTTATCTCCTCCTCAACAGCAGCAGCAGCAGCAGATGCAGCAGCTTAATCCAGATTTCAATTCACCATTAATGCCAGCATCAGCAGCTGGAGAAGTAAAAAAAGTTGCAGATGATGATTTATCATCATCTCCAGTGACTTCTTCTTCTATTAACACACCCCCCGATGTGAATGTGAATGTGGATATAAACACACCCTCTCCCTCTTCCGACATTCAAGCTGAGGATAATAATAAACATGATGATGATGATTCAACCACTCACCATGATGATAATAATAGCACACAAATTCTTGTTTCTGACTCCAAACAACACTTACTTGAACCCAAGAAACAAGACTCACCCGCTCAATCCTGCACCAACTTTGGTAGAGGAAAATGGGTCAGGGATGACACT | |||||||||
gi|113172834|gb|EE607877.1|EE607877 CHWL3256.b1_P21.ab1 CHW(LMS) silverleaf sunflower Helianthus argophyllus cDNA clone CHWL3256 GCTGCTGTTGTTGCAGTAGGA EST sequence (targeted fragment marked with yellow): TATGATACTCCTGTATCTTTCCTTCGTCTTCACCGTCAAAATCAGTTGTTTCTTTTAAGCCAGGGTCCACGAAGTAGCAATTAGGGCTATCTTCAATAGAGACTGACAGGTAAAGTGTGCGAGATGCCACCATGCTCCACTTCCATTAAGGTAAATTTGTTCCTATTGTTACAACAACAGTTCATGGTTTCTGATTCTTTTGGTTATGTAATCCTCATGTCTATCGAATCCTCCCCATTTATTGAGATTTTTTGTGCTTTTAATCCATTTCTAATGACATTTTTTTGTACTTTCAGTGTTTTGCTATTTGATTTAGGGAGAATTGAAGACTTTCGATTCCTAGGGTTTGATTGTACGAAATTCTGGTCCGAATTATATAGTATTCGTGCAATATTCATTGTTATTGTTGATGAAATGGAGAAGCTTAGTCTCGGTTTTGTTTAAAATTGTGTCTGCTTTAGAGAAATCGGTTTGTTTAAATTGTAATTCCAATGATGATGATGATGTACTTATCAGGATCTTCATATGGTACAACGGTGGTAGAAAAAAAATTATGGTGTAAGATGCCCGATATGAAGAAGAAAGCTTAAGATAGTACTGGTAGTTGTAATAAATAATAATAGTGTTGAAGCTCTCTTGGTCTCAAAGATTTGTTTTGATTAGTTGATTTGAAGTATTACAATGTGATGTATTTTGTTTGATTTANGTTGTGTATGTTTAAGGAAGATGATATATTGAGGCCGTCTGATTTGAATATCCTTATTTTCATTGA | |||||||||