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mature miRNA: TTAGATTCACGCACAAACTCG
species: Helianthus argophyllus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|113186544|gb|EE623794.1|EE623794 CHWS1805.b1_I20.ab1 CHW(LMS) silverleaf sunflower Helianthus argophyllus cDNA clone CHWS1805 

TTAGATTCACGCACAAACTCG
|||.||.||||||||| || |
AATTTAGGTGCGTGTTAGAAC

EST sequence (targeted fragment marked with yellow):
GACTGGGAAGTCGATGAAAGTAGGTGCAGATGCAGTGAAGGCAATGTCACACGGAAGACATATTATATCTTTTGAAAAAATAGGAGAAATTACTATTGCTAATCACGTCTTAAAGCTCTCTGATATCAAGATTGTGCGTGGATTTAAACGCCCTGATGGCATGACAGAAGAGCAAATGGATGCAGCTAGTGATGGTGATGTTTTGGTTATCATTGATTTGCAACGTGACGATTCATTGTTGGAAGCTGGATTGCACGTGAGGTTGTTAACCGAATTCAAAAGCTAAGGAAAAAATCCGCACTTGAACCCACCGATGCAGTGGAGGTCTACTTCAAATCGTTGGATGAAGATGTATCAGTTTCCGCAGAAATGTTAAAATCCCAGGAAGCATACATCAAAGAGGCACTTGGCTCGTCTTTACTCCAGTTTAGCATGATTCCAAAACATGCTGTAATCATTGCTGAGGAGACCTACAAGAACATCTCAAATTCTGACTTTCAGATCACTTTGTCAAGAGCAGCATTAGTATTTAATGAGAACGCAATGGTCGACTTATACGCAGGGAATACAAAGTATGCACAGGCATTGCAGGTATATCTGTTGTCAAGAGACCACAGCAATCTAAAGTCGGAATTTCAGCACGGAAATGGAAAGATTACGGTGAGCTGCATTGAAAACCAGCCTGCTGTTGATGTGGTCTTGGGAAAACACGTGCACTTGACCGTTGGTGATTATTTCGCAAGCACAAAAGCTCTTTGATAATCATCTTTAATACATTTATTTTTGGTCATA


gi|33133113|gb|CF094046.1|CF094046 QHN16K20.yg.ab1 QH_N sunflower H.argophyllus (drought stress) Helianthus argophyllus cDNA clo 

TTAGATTCACGCACAAACTCG
||||||||||||||||||.|
AATCTAAGTGCGTGTTTGGGG

EST sequence (targeted fragment marked with yellow):
TATGCGGATTTTTTGGCGTACAGAGGTCGAATGTTTCAAGAGGAGGTGATGCAAATGGAAGCCTCGGGTTCTGTTCCACCTTCAAGTTCGTTTGATCAGGCCTTCTACAATCTTGATCAACACCTCAAGGACTCCATGTTCTTCATTTAAATCCACTGCCTTGAGATGGGTCGAAGACTCGAAGTGCCTATATGCATATCAACATCCTTTCTAAACTGGATTAGCAAAGGGGTTTGTGCGTGAATCTAATGCATTTCGTTCTTTTTCAGTGTTCTTTTTAGTTTGTGTGTTTGAATAAAACCTTGAGTAAAAGCTACAGGTGTCGCTTGTAGTCAAGGTCGGTTTGGTTTGTTATGTTTTTAGATGTTTGGAACGGTTGATGTTAGCTACTATTTTGTATTATATTGTGTGATAAGTATGCTCAGTTATTG


gi|113179660|gb|EE609743.1|EE609743 CHWL5047.b1_M13.ab1 CHW(LMS) silverleaf sunflower Helianthus argophyllus cDNA clone CHWL5047 

TTAGATTCACGCACAAACTCG
|||||||||||||||||| ||
AATCTAAGTGCGTGTTTGTGC

EST sequence (targeted fragment marked with yellow):
AAAACAAACCAACCGGCCGGTTTCTTCTTCTTCTTCTTCAGATCTAACCTATTCTCTTCAGAACAGCCATATTTCGTGTTTGTGCGTGAATCTAAGGATCCTTAATCTTATCAAATCACCAGTAATCATACTTTTTGTTTGTTTGTTTCCAGACAGGATCTGTTGGTTCGTTAGATTCACGCACAAACTCGTAATATGTCTCTTCATTTGCAACCAATCAAGATTCTTCATGAATACATCGCCGCCGCCGGAATCTTTGAATCTGGTATGTTTTAACCCTTATCAAGAATCTTTGTTTCTATCTACATATATGCTGCATATACCAGATTTCTTTGTTTTTTTAATCAGATTTTAGATTTTGATTTTGTGTGTACAGGTTTTGGAAATGAAGATTTTTTTTTTTTTTAAAATTGGGATTGTTTTAGGCGTGTTTTGATTTCATAGTTGAATTAGGGTTTTGTGTTTTGATATTTGAAAATTAGATGTTTAAAGATTCAATAAGTTGGTATTTACTAAATTAACATATATTTTGCAGAAATTAAAATTGATTGCTTGCAAGTTAAGCAACCTCAATCTGTAGATCGCAACTTGTTCTTGGATGTTCAATCAAAATATTATAAGCAAACCCGTTTCAGCCAAACACGAACCAGCACGTGTTTATCCCGTTTGCTTTTGATACTTTTGGTTTTCGTGGACCTACTTAGTCGAGTTCAAAGGGTCATGCACAGTAATGTTATGACCCCGAGATCTATGGAGATAGTTTTTAAAAGACCTAGTTTTGCTAT


gi|33131680|gb|CF092613.1|CF092613 QHN12D14.yg.ab1 QH_N sunflower H.argophyllus (drought stress) Helianthus argophyllus cDNA clo 

TTAGATTCACGCACAAACTCG
||||||||||||||||||.|
AATCTAAGTGCGTGTTTGGGG

EST sequence (targeted fragment marked with yellow):
AGAGGTCGGATGTTTCAAGAGGAGGTGAAGCAAATGGAAGACTCTGGTTCTGCTCCACTTTCAAGTTCGTTTGATCGGGCCTTCTACAATCTTGATCAAAACCTCAAGGATTCTATGTTCTTCATCTAAATCCACAGCCTTGAGATGGGTCGAAGTGCCTATACGCATATTAAACATCCTTTCTAAAATGGATTAGCAAAGGGGTTTGTGCGTGAATCTAATGCATTTCGTTCTTTTTCAGTGTGTTTTCTTTGTTTGTGTGTCGAATAAAACCTTGGATAAAATCTAGAGGTGTCGTCGCCTGTAGTCAAGGTCGGTTTGGTTTGGTTTGGCTTGGCTTGATTTGTGTTTTACCTTTTGATTTCCTTGGAGGTTGAAGGGTAGTTTATGTTTTCAGATGTGTGAAACGGTTGATGTTAGCTACTATTTTGTATTGCATTGTCATTATTGTGTGTTAGTTATGT