| mature miRNA: GTGTTCTCAGGTCGCCCCT species: Helianthus ciliaris database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|125421077|gb|EL433049.1|EL433049 CHCS7393.b1_B01.ab1 CHC(LMS) Texas blueweed Helianthus ciliaris cDNA clone CHCS7393, mRNA se GTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): GCTTCGGCGGGCTCATGGATGGTCTTCGATCTCGAGAAGGGTTCAACACTACATATTGACCTTGCAAAATCAAATTCAAGGTCTAAACGCTCAAGAATAGATGATGAAAGGCATGGATCTGACAAGAGGGCAAAAGGGTCATCAACATATACAAGGGGCATTTCTGATCCTGGTGTTGGCAGCGTTCACTTGCCTGGATTGAGTAATTCCGCTTACAACATGATTGGTTATCCATCTGCACAAAGTTATGGAAGCTTTGATGTTCGACCTGAGAACACTGGTGCAAGAGTGAGAAACTCTTCCGCTCCCCCATGTCCAACAATATTTGTGGCTAATTTGGGACCCGCTTGTACCGAGCAAGAGCTTACTCAAGTATTTTCAAGATGTCGTGGATTTTTGAAATTAAAGATTCAGAGTACATACGGGACCCCAGTGGCATTTGTTGACTTTGCGGATACTGCGTGTTCTAGCGAAGCTTTGAATCAGTTACAAGGCACCGTTCTACACTCATCGGTGGCTGGTGAAGGGATGCGGTTAGAGTTTGCTAAATCGAGGATGGGCATGCGGAGTAAGAAGTCTAGGTAAATTTGGACGTCTACAATGCCATTAAAAGGTAATGGACGAAGTAGGATCAAATTATGTAATGTGAGGCTGCATTTTGTACCTAAATAAATTAACGACCCTCTTATTTCTTTATATTTTTCTCTCGTTTCGTTTTCATATAAGCAGCAAATGCAGTGTACTCTTGTATTGCCTTTTCTTAAT | |||||||||
gi|125404930|gb|EL416903.1|EL416903 CHCL5463.b1_M21.ab1 CHC(LMS) Texas blueweed Helianthus ciliaris cDNA clone CHCL5463, mRNA se GTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): TTGAATGCCTGCTAAGAAAGATGAATGGGGGTTTGTTGACGACCTTGTCTATGGATAATAATCATTTTTTGTCCATGGATTCGAGCTTGTTTGACCGGGAGATGAATCGGGCGGTGGATCTGACGCTACCGCCCGATATTAACCTTCCTTTCTCGGTGGAGCCGAGCCCGCCGAATGATTCGTGTGATTTGTTAGATGCTGGTTTAGGTTCTCAGCATTATCAGACCGAGACGCAGATTTGTGTGACGAAAAGTGGGAAGAAGTCTGCGAAACGGCTTGATAGTATGTGGGGGGCTTGGTTTTTCTTTAATTTTTATTTTAAGCCGGCGTTGAATGAGAAGTCGAAGAATAAAGGGAATCGGGAGAACGGGTATGATAAGTCGGAGCTGAAGCTGGATGTGTTCTTGGTTCAACATGATATGGAGAATATGTATATGTGGGCGTTTAAGGAGAGGCCTGAGAACGCGTTGGGGAAGATGCAGTTGAGGAGTTATATGAATGGGCATTCGCGGCAAGGGGAAAAGCCGTTTCCGTTTTGTGCTGATAAGGGTTTCGTAAGGTCACATAGGATGCAAAGGAAACATTATCGAGGTCTGTCGAATCCTCAGTGTGTTCACGGGATTGAAGTTGTTCGTTCGCCGAATTTGATGGGATTAGATGAAGAAGAAAGAAGAAGGTGGATGGAACTTACCGGAAGAGATTTGAACTTCTCTATAACTCTCGAAGCAAGTGATTTCGGTTCGTGGAGGAATCTTCCGAACACTGATTTTGAGATCGAACGACCGCTGAT | |||||||||