miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTCCACGGCTTTCTTGAACTG
species: Helianthus ciliaris
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|125413388|gb|EL425360.1|EL425360 CHCM4882.b1_C22.ab1 CHC(LMS) Texas blueweed Helianthus ciliaris cDNA clone CHCM4882, mRNA se 

TTCCACGGCTTTCTTGAACTG
|||||| ||||.|||.|| .|
AAGGTGGCGAAGGAATTTTGC

EST sequence (targeted fragment marked with yellow):
GCGGAGGGGGTTCGAGGTTACACCGCCTCCTCCTCTTGCATTTCTTCATCAACTCCTATTATCACCAGGTTCTGAGCTATGGAAGAAAAAGGGATGTGATAATGGAAGCAGTTGATGCTGATCCAAATTGTGTGCTTGCAAACATTTTGGCTGCCCTTTTTTGCTCTTCTCATAACCCATCTCGACTTCCTTCACTTGTTCATGCCGCCACCTCCCATCTGGGGAAGGCAACTCCTTATGAAAAAGCAGTTTTTGAAACAATCAACTGTATGCTGTCACCAAATAGGGATGATGAAGTGGCTGTTGAGTTGCACTCAAAGCTGTTGAAAGAGTTTCCAAAGGATTTAGTATCTTTGAAGAGGGGGCAAGTTCTATGCTTTTACATGGGTCGAGCAGATCTATCTTTGCAACTCGTTCAACAGGTACTTCCTTCAAATAATCAGCAAGATTTTGTATATGGAATGCTTGCGTTTCCTCTATTAGAGCTTGGACGAATGGAAGATGCTGAGAAAGCCGCCAAAAAGGGCTTTCAAATCAACAAGGAAGATCCATGGTCGCAACATGCGTTGTGCCATGTTTACCAATATGAATGCCGTTTTAAGGAAGCGGTGGAATTTATGGAAGAATGTTCAAAATCTTGGGGTCCGTTATCGTCATTCATGAACACTCACAATTGGTGGCATGTCGCTCTGTGTTACTTAAAAGGTAACGCCCCCCTTTGAAAAGTGTGCGAAATTTATGAAAATCGTATCTGGAAAGAG


gi|125405270|gb|EL417243.1|EL417243 CHCL5778.b1_C05.ab1 CHC(LMS) Texas blueweed Helianthus ciliaris cDNA clone CHCL5778, mRNA se 

TTCCACGGCTTTCTTGAACTG
|||||| ||||.|||.|| .|
AAGGTGACGAAGGAATTTTGC

EST sequence (targeted fragment marked with yellow):
GCGTCCAAGGTGTCTCCTAAATTAGGCTATAATTGATATCTATCTTTCATCGCAGTCTTCAAATTACAGTGATACGATGATGTTGGACAGATGGGGTTACGAGGTTAACACCGCCTCCTCCTCTTGCATTTCTTCAATCAACTCCTATTATCACCAGGTTCTGAGCTATGGAAGAAAAAGGGATGTGATAATGGAAGCAGTTGATGCTGATCCAAATTGTGTGCTTGCAAACATTTTGGCTGCCCTTTTTTGCTCTTCTCATAACCCATCTCGAGTTCCTTCACTTGTTCATGCCGCCACCGCCCATCTGGGGAAGGCAACTCCTTATGAAAAAGCAGTTTTTGAAACAATCAACTGTATGCTGTCACCAAATAGGGATGATGAAGTGGCTGCTGAGTTGCACTCCGAGCTGTTGAAAGAGTTTCCAAAGGATTTAGTATCTTTGAAGAGGGCGCAAGTTCTATGCTTTTACATGGGTCGAGCGGATCTATCTTTGCAACTCGTTCAACAGGTACTTCCTTCAAATGATCAGCAAGATTTTGTATATGGAATGCTTGCGTTTCCTCTATTAGAGCTTGGACGAATGGAAGATGCTGAGAAAGCCGCCAAAAAGGGCTTTCAAATCAACAAGGAAGATCCATGGTCGCAACATGCGCTGTGCCATGTTTACCAATATGAATGCCGTTTTAAGGAAGCAGTGGAATTTATGGAAGAATGTTCAAAATCCTGGGGTCCTTTATCGTCATTCATGAACACTCACAATTGGTGGCATGTTGCTCTGTGTTACTTAGAAGGTAACGCCCCCTTTGAAAAAGTGTGCGAAATTTATGAAAATCGTATCTGGAAA


gi|125417276|gb|EL429248.1|EL429248 CHCM8452.b1_G01.ab1 CHC(LMS) Texas blueweed Helianthus ciliaris cDNA clone CHCM8452, mRNA se 

TTCCACGGCTTTCTTGAACTG
|||||| ||||.|||.|| .|
AAGGTGACGAAGGAATTTTGC

EST sequence (targeted fragment marked with yellow):
GCTTGCGTTTCCTCTATTAGAGCTTGGACGAATGGAAGATGCTGAGAAAGCCGCCAAAAAGGGCTTTCAAATCAACAAGGAAGATCCATGGTCGCAACATGCGTTGTGCCATGTTTACCAATATGAATGCCGTTTTAAGGAAGCAGTGGAATTTATGGAAGAATGTTCAAAATCTTGGGGTCCTTTATCGTCATTCATGAACACTCACAATTGGTGGCATGTTGCTCTGTGTTACTTAGAAGGTAACGCCCCCTTTGAAAAAGTGTGCGAAATTTATGAAAATCGTATCAGGAAAGAGTTGGATAGAAGCGACGCTTCTCCCGTAGAGGTTTACTTGAACGCAGTTGGCTTGTTATTACGGGTTCATGTAAGAGGCAAAATCCATTTCTTCGAGGATTATTTGAAGATGTTAGCAGGTTATCTATCAGATCGAGCGTTTTGGTATCTTGAGTGGCACCTTGATTTGTTGATATTATGGGCCTTAGCTTGTACCGGGAAGTCATCGGAGGCTCGAGACTTACTCGAAGGCTTAGAATCAAAGGTTTCTACGATGAATCCGAAGAAAGGAAAGTTAATGCAGAAAGGACTCACGCTTGCAGAAGCCGCATATGAGTATGGGAGAGGTGATTTCACTCGAGCGTTAGAGTTGCTTGGTCCAGATTTTGATGCCGAAAGCTGTAAGATGGTTGGTGCCTCTGGGGAACAACTTGATGTGTTCAATGAAGTTTGGTATGTTATGCTACTTGATGCAGGAGATGCTAAAAAGGCGATTGAAGTGATTGAGAA


gi|125417806|gb|EL429778.1|EL429778 CHCM8937.b1_B03.ab1 CHC(LMS) Texas blueweed Helianthus ciliaris cDNA clone CHCM8937, mRNA se 

TTCCACGGCTTTCTTGAACTG
||||||..|||.||||| ||
AAGGTGTTGAAGGAACTAGAA

EST sequence (targeted fragment marked with yellow):
GGGGCATCCATCCTCTCTCCTCATCCTCACCTGCAACATGAAGCTTCCTTCCATGGCCACACTCCTCCTCTTCACCCTCTTCACCCTCTCCACCGCCGTCGACATGTCCATCATCCGTTACGACACCACCAACTGGCGCACTGACGAAGAAGTCAACGCTCTCTACGAGTCATGGCTCGTCAAACATGGGAAAACGTACAACGCTATAGGAGAAAAAGACAAGAGGTTTGAGATCTTTAAAGATAACCTCCGTTTCATCGATGAACATAATTCTGGTGACCACTCCTATAAGCTTGGACTCAACAAGTTTGCCGATCTGACTAACGAAGAGTACCGTGCAACTTATACTGGTGTCAAGATGGTTGACGGTAAGAAGAAGTTGAACTCGGTTAAGAGTGATCGGTATGCTTTTCGGTTAGGTGATTCCTTGCCGGAATCAGTAGATTGGAGAGAATCTGATGCTGTCACACAAGTCAAAGATCAAGGAAGTTGTGGAAGTTGTTGGGCATTTTCTGCCACGGGATCGGTGGAAGGGATCAACAAGATTGTGACTGGTGATCTGATCTCAATTTCTGAACAGGAGCTTGTTGATTGTGATACATCCTACAATGAAGGATGTAATGGTGGTCTTATGGATTACGCTTTTGAATTTATTATAAAGAATGGTGGGATTGATACCGAACAAGACTATCCTTACACTGGTAGAGATGGTAGATGTGACGCTAACAAGAAAAACGCAAAGGTTGTTACCATTGATGGTTATGAAGATGTACCGGTTAATGATGAATCGTCGCTCAAGAAGGCTGTTGTGAACCAACCTATAGCGGTTG


gi|125404738|gb|EL416711.1|EL416711 CHCL5288.b1_P02.ab1 CHC(LMS) Texas blueweed Helianthus ciliaris cDNA clone CHCL5288, mRNA se 

TTCCACGGCTTTCTTGAACTG
|| ||||||||||||||| .
AAAGTGCCGAAAGAACTTAGA

EST sequence (targeted fragment marked with yellow):
AGGTTGAAGAAGAAAGTGAGAAGGTAGGTAGAGACGGAAAAGGGGGCAATTGAGAAACAGTGACCACTTTCTCCGTCAAATTAGGGTTTTCTGCATTTCAACAACATTCCATCAATTCATCTTCCAAACTCGACAATCATCACGCCTGCTTACATGCGTAAAAACCGTAGTACACGCGTTGAAGTCTTGAAGATATATGTGGTATGCGTTGAAAAGGCTTAAGTTTGTATGATCAAAGATTCAAGAAAGCCGTGAAAGAACAATCTTTATCTAGTATTCCAAACGATAGCTAAAACGGGGTCGCTGTGTTGTGTGGCTGCAAGGCCACATGGGTCAAACGCAGCTAGTGCTGACTGGTCCATGGGCCCACACGAGCCGTACTGGAGAACCAACACAAGCTTCTCGCCTCCACCACCGAGATGGGATATTAGGTATCATTCGGAAGGTCAATCGTTTGGTTCTCAAGAGGGTAGTCAGTTGCACGGATCTTCTACATCGTCGAATAGTAGAGAAACTAGAAGCTGGTTAAGAGGTGGGTATGTTCCTAATCATCAACATTCGGTTTCTGATGGAGTTGGGCTGTATATTAGTAGCCCGTCTGACTTTTCTCCAGCTCAGCAGTGGACCCCTCCCGCAATTCGAGAAATCGGTGTTGACGAATTCGGAAATTCATCTACGAGAGTTTTAGGGTCTATATCCTTCTCACCAATCATCGAGGGAATTTCATTTTCAACCCCTCANGATAGCCGACCTTCAGTTTCTTCTCTTTCCGACGGTAGCGATTACGAACCAA


gi|125407576|gb|EL419549.1|EL419549 CHCL7903.b1_M08.ab1 CHC(LMS) Texas blueweed Helianthus ciliaris cDNA clone CHCL7903, mRNA se 

TTCCACGGCTTTCTTGAACTG
|.||||.||||| ||||||.|
AGGGTGTCGAAATAACTTGGC

EST sequence (targeted fragment marked with yellow):
GATCTGCAAACAGCCATAAAAATGGTCCTCTTTCTATTCTTCCACGGCTTTCTTGAACTGCATGGGTTTTGATCTATCAGATCTGTGTTTATCATACAGTCTTTGCGGTTCAATAAAGCTGTGGGAAGATAGAGACAGGATCAAACCAGAAGAAGCAAGAAAGTTGCGTTATTTCATTTTCCTGATCTTTAATTATCTAAAATTTCTGCTTGATTTTTTTATGTTTGATATAAATTTTAGAGTATACATAAAGACGTAGGGGTGTTAATTGGTTTGGTTTATTCAAATTTCCGAAACTGAACACCCTGCACTGAAAACCAAATATGTAATTCGGTACGGTTTTAAACGGGATAGAGTTGGTTTTTGGTTTAATTGGAATGAGACCGAATAATCAACATCCCTATCAAGACTTGGAAGGTTTAAATTTTTGATTTGCAGTCACGTTTTGAAATCACAATTTGACTGTTTTTTTTTCTTGTTATTTAATTTGTTTCTTTATGATATAAATTAATAATCTTGGGACTTTGATTTTCTTAAATTGCAGGTGAAATAATTATTGATTCATTGATCGACATGGCCAAAGGTTTCTTTGGTGTTTCTATTCTGCTCTCTCTCTCTCTCTCTGCACACACATAGACAGATATATGTTGTATTTTTTTTTTTGACCGGCATATATGTTGTATTTAGAAGTCTGTAACTACTGGAATTGGATTGTTTATTGGATGTTTGTACTCTTGTTTAATTTATATTTTAATTTATCAATTTTGTCATCTAACTTGGAGGTATGTATGAATTTATAGTAAATTGGTTATGGGTTCC