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mature miRNA: TGAGCCGTGCCAATATCACG
species: Helianthus exilis
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|113312998|gb|EE658407.1|EE658407 CHES7642.b1_D16.ab1 CHE(LMS) serpentine sunflower Helianthus exilis cDNA clone CHES7642, mRN 

TGAGCCGTGCCAATATCACG
||||||| ||||||||| ||
ACTCGGCCCGGTTATAG-GC

EST sequence (targeted fragment marked with yellow):
GGGGGTAAGGAATGTGCTCGGATATTGGCCCGGCTCACTCTTTTCTTACTTAAGCGAAAGTGCATCAATGATCCAATGGGGAGGTGAGGTGGTGAACTCTGCCTCTGACGGGCAACACACCACCACCCAAATGGGCAGCGGTCATTTCCCCGAAGAAGGCTTTGGTAAGTCTAGTTACTTCAGAAATGTTCAAATAGTAGACGGATCAAACAGTCTTAGAGCCCCAAAAGATATAGACACGTTCACTGAGCAACCCAATTGCTACGATGTTCAAACGGGCAAGAATGATGGTTGGGGTAGCTACATTTACTATGGTGGACCAGGCAGAAATGCGAACTGCCCGTGAAATTTGATAGTTATGGAAGTTCATTAAATTAATGAACTGGTGTATTTGGTATATGTATTATTGTAGATTCTAATTCAGTTTACTTCATACGAGTATGTTAGAAACAAGGATATTGTTATGGTTTGTTAGTTGGTTTGGGTTTGGTTGTATTTGATTATGACGA