| mature miRNA: GCTGCTGTTGTTGCAGTAGGA species: Helianthus paradoxus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|125470121|gb|EL481759.1|EL481759 CHUM3762.b1_D06.ab1 CHU(LMS) puzzle sunflower Helianthus paradoxus cDNA clone CHUM3762, mRNA GCTGCTGTTGTTGCAGTAGGA EST sequence (targeted fragment marked with yellow): ATCCGAGGAGATTTGTTTTCTATGTATCTTGATGTGGATAAGTTTAATGCATCGTCAGCAACGTCTACGTTAGCTGGCGAAACGTCTTCAGCTGCGGGTCAAGTTTCGGCAGGTTTGACTCCTGGGCCTGAGACCTTCGTCCCGGGCCCGAGTGAAAGACCCAGAGTTCGACATCAGCATAGTCAGTCCATGGATGGGTCCACTACGATTAAGCCCGAAATGCTCACTTCGGGTTATGAAGAAACATCTTCTGATGCTAAGAAAGCTATGTCTGCTGCTAAGCTTGCTGAGCTTGCTCTTGTTGACCCAAAGAGGGCAAAAAGGATATTGGCGAATAGGCAGTCAGCTGCAAGGTCAAAGGAAAGAAAGATGAGATATATTGCGGAGCTTGAAAGGAAAGTTCAGACGTTGCAAACCGAAGCAACCTCATTGTCTGCTCAGCTCACCCTTTTGCAGAGAGATGCGAGTTGCATGACAGCTGAAAATAGTGAATTGAGGCTGCGTTTACAAACCATGGAGCAACAGGTTCACTTGCAAGATGCTTTAAACGATGCTCTAAAGGAGGAAATCCAGCATCTGAAAACCGTAACCGGGCAGAACCTTGCAAACGGTGGACCGATGATGAATTTCCCTCCGTCGTTCGGATCAAACCAGCAGTTTTACTCCCAAAACCAAGCTATGAACACGATGTTAACCGCACAACAGTTTCAGCAACTCCAGATTCAGTCCCATAAACAGCAGCAGCAGTTGCAGCAGAAACACCAGTTCCATCAACTACAGCAACAGCAGCAGCAACTTCACCAGCAGCAGC | |||||||||
gi|33122833|gb|CF083790.1|CF083790 QHL20J23.yg.ab1 QH_L sunflower H.paradoxus (salt stress) Helianthus paradoxus cDNA clone QHL2 GCTGCTGTTGTTGCAGTAGGA EST sequence (targeted fragment marked with yellow): ATTTACAGTAGCTTCTTCCTTCAAACATATCCATGGTCTCCCGAACTCAAGCTTCACTTCCTTCTGGCAATGTTATCAACCGATCTTCCTGATCAAATACTAGAGCGGTTTGACAGTTTGTGCATTTGACAGTGTTGGTAGAACCCCCACTGGAAATTGACAATATGGTTCCAAAGAATGAAGTATTCTCTGTCCCACAGTTTGGACAAAGGCCCTTCAATATCAAGAAATCCCTCACAATGACGTTGGTTAGCGTAAAGGATAACCATAATATGAACGGCAGAGCCGCGAACCAAGTGAAGATAAAACTAAATGGCTCTGGAAGCTCCAAAAGGTATGTAATTTCAAACCCAGTAATGTCATCCAAGAAGAAGAATAATCCTACTGCAACAACAGCAGCTGGGACATTTATGAGGAACATTTTGAGGTAATCAACAGTCGGGTCACTGTAAACCTTTCGACTACGAAGACTGCATCTTGGACCCTCAGCCACTATATCACTTCCATCTTTCTTTAGTTGTTTTTTCAGGTTGTCAAACTCTACATCACTCATTATTGGGTTACCAGATAT | |||||||||
gi|33125432|gb|CF086387.1|CF086387 QHL9F20.yg.ab1 QH_L sunflower H.paradoxus (salt stress) Helianthus paradoxus cDNA clone QHL9F GCTGCTGTTGTTGCAGTAGGA EST sequence (targeted fragment marked with yellow): ATTTACAGTAGCTTCTTCCTTCAAACATATCCATGGTCTCCCGAACTCAAGCTTCACTTCCTTCTGGCAATGTTATCAACCGATCTTCCTGATCAAATACTAGAGCGGTTTGACAGTTTGTGCATTTGACAGTGTTGGTAGAACCCCCACTGGAAATTGACAATATGGTTCCAAAGAATGAAGTATTCTCTGTCCCACAGTTTGGACAAAGGCCCTTCAATATCAAGAAATCCCTCACAATGACGTTGGTTAGCGTAAAGGATAACCATAATATGAACGGCAGAGCCGCGAACCAAGTGAAGATAAAACTAAATGGCTCTGGAAGCTCCAAAAGGTATGTAATTTCAAACCCAGTAATGTCATCCAGGAAGAAGAATAATCCTACTGCAACAACAGCAGCTGGGACATTTATGAGGAACATTTTGAGGTAATCAACAGTCAGGTCACTGTAAACCTTTCTACTACGAAGACTACATCTTGGACCCTCAGCCACTATATCACTTCCATCTTTCTTTAGTTGTTTTTTCAGGGTGTCAAACTCTACATCACTCATTATTGGGTTA | |||||||||
gi|125464033|gb|EL475726.1|EL475726 CHUL3689.b1_A12.ab1 CHU(LMS) puzzle sunflower Helianthus paradoxus cDNA clone CHUL3689, mRNA GCTGCTGTTGTTGCAGTAGGA EST sequence (targeted fragment marked with yellow): CGGGGATTCTTTCATTCTTCACGCGTTCAGGTTTCCACTTCCATATTTTCCTTCACGTTTCATCATCATTCTTCACTAATTCACGCAATTTACTCACATAATTCGCCCATATTTCAACTAATTCCCACAGTTCTTGATCTTCCATCGATTCAACTCCGGTTTGTGCACCCAAATTTCTCTTAAAAGAAGTAGAACTCAATACTGTTATTTTATTATTGTGCGCACCTTTGAACCGTAATGGTTGCCATGGGTTCTTCCGAAGCGATTCTGCAAGTGTTTCGTGCGCCTTTTGTTAAGCCTGACTCAACGTATTCTCTTGGATCGTTCATAAAGTACAAAAAGAAAAGCGGCTCAAATGTCGTTCGGTTGTTCAAGTGCTCAAGTATATATCACCAGTTTCCCGCCATTCCCACCACCCGATTTGATAATTTAAAAGACGAACGATTTGAAAGTTCCAGTTGTAAATGCCAAAACACCGAAAGTGTTAGTGGATTTACTACCGAAAACGAAAACAGTACATGGTTTGTGGATAATGCTAAAGAGTTTAATACGATTCAAGAAACGGGTCGCTCGCCAAATCTATTGGGTTCGGAGGACGTTCAGAAGATCGAGAAAGAAAATGAGAGTTCTTTATCTGATGTTATTGAGCAAGAGGCGTGGGACCTACTGCGTGAATCCATCGTGCACTACTGTGGTAGTCCTATTGGAACAATAGCGGCAAACGACCCCACAAGCTCAAGTGTTTTGAACTATGATCAAGTTTTTATTCGTGACTTTATACCGTCTGGTATGGCTTTCTTGTNAAACGAAGAGTATGATATTGTCCGAAATTTCATCCTTC | |||||||||