| mature miRNA: TCGGACCAGGCTTCATTCC species: Helianthus paradoxus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|125467197|gb|EL478890.1|EL478890 CHUL7411.b1_F05.ab1 CHU(LMS) puzzle sunflower Helianthus paradoxus cDNA clone CHUL7411, mRNA TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): GAGTGCCCAAACCTAGCTCTATTCGTAGACAGCAGCTTATTAGGGATTGTTCTATTCTGTCTAATGTTGAGCCCAAACAGATCAAAGTTTGGTTCCAGAATAGAAGATGTCGAGAAAAACAGAGGAAAGAAGCTTCACGCCTTCAAGGTGTGAACAGAAAACTGTCAGCAATGAACAAACTCCTAATGGAAGAAAACGATCGATTACAGAAGCAAGTATCACATCTGGTGTATGAAAACGGTTATTTCCGTCAGCACACTCCTAACACGACACTTGCTACTAAAGATACTAGTCGTGAGTTGGTGGTAACGAGTCATTTGACTCCGAACCCGCCACAGGATGCTAGTCCTTCTGGACTTTTGTCCATTGCTGAAGAAACATTAACAGAGTTTATTTCAAAGGCTACCGGAACCGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGCGTGGCAGCACGAGCTTGCGGTCTAGTCGGTCTTGAGCCTACACGGGTTGCTGAAATCCTCAAGGATTGGCCCTCATGGTATCGTGATTGCCGAGCTGTAGACGTGGTCAACTTGTTACCTACCACTAATGGTGGAACCATTGAGCTTTTATACATGCAGCTTTATGCTCCCACAACTTTGGCTACTGGTCGTGATTTCTGGCTATTGCGTTACACGTCTGCTACAGATGATGGAAGTTTAGTGGTTTGTGAAAGATCACTAAACAACATTCAAAATGGTCCAAACATGCCATCGGTTCAGAATTTTGTACGAGCGGAAATGTTGCCTAGTGGTTACCTTATACGACCCTGCGAAGGAGGCGGTTCT | |||||||||
gi|33120792|gb|CF081749.1|CF081749 QHL14E01.yg.ab1 QH_L sunflower H.paradoxus (salt stress) Helianthus paradoxus cDNA clone QHL1 TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): TTGGGCCGGGTCAATTCGGTCAAGGGGAACCGCCTCAACAGCCAATATGTCTGCGTAAGAGTTTGAGTGCACAAAAGCAAAGCCGCTGCTTATAAAGTATTTCTTCACATCGTTACCTTCGTGGACCGAAAGGAGGCCTGGTTTGAGCTCTGCGATTGTTG | |||||||||