mature miRNA: ATTTGAAGGATGATTTCAAG species: Helianthus tuberosus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|125438500|gb|EL450197.1|EL450197 CHTM3203.b1_F09.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM3203, m ATTTGAAGGATGATTTCAAG EST sequence (targeted fragment marked with yellow): CGCGGGGAGCAGTGGTGGCGATTTCGTGACCAGGAAAGTGAAGAGACAGAGAGACATAAGGAGAAATCGAAAGAGGGAGGAGGATGAAGATCAGGAATTAAGACAGGGGGCCTATCGGTGATGGAGACGACCGTGAAACTGCCGTCTTTAGGCGGCGGCGATGATGGTTTGATGAACACCCGTTACAGGTTCTACTTATTTTGATATCCGTTAGTTGTTTAATAATTTAATTTATTTCATCTTCTTTCTCCATCTGATCTGTTTCATTGCAAATTGATGCACCCCTATAGTTTAATGTGCTTGTATATTATTGCAATCTGATAATCTTTCTGATGCCCACCAACTGTTTGTTTGAATGTTTGTGATTATGGCAACAAGGTGGACCTTTATTGAGCTTGGAGTCATGGATTCAGATCACACAGGTCCCTAATCTTGTCTTCTCTTTAATAATCTGTCAACTGTATCTTTAATTATTGTTGCTTTCAATTCATCTTTTAAATTTGCAAGAATTGCTGTTGTGTTAATGGGAGTTGGTGGCGCCGGAAAATCGTGAGTTTCATCATGATTTTGGTGTAATCAGGAATTGCTGTTGTGTTAATGGGAGTTGGTGGCGCCGGAAAATCAACTATAGGCGAACTGCTTGCAAAAGCTCTAAATTGTAGCTTTGTTGATGCTGATGACTTCCATCCGCAATCAAACAAAGTGTTTGGGCAAATGGTTTTCAAAGGGTACTGGAGGAAGCCGGTTCACTGGATTCTTTCATCCCGCTCTGGTCTTGCAGAGACTGAGTTGGAGTGAGTTGTTAGCAAGGGCCTCATCAAAAA | |||||||||
gi|125435774|gb|EL447471.1|EL447471 CHTM26223.b1_N03.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM26223, ATTTGAAGGATGATTTCAAG EST sequence (targeted fragment marked with yellow): TATCCGAATTATTACCACATTTCACTTGAGCTCTACATTCAAGATCTGCAGCTAATTTCTCCTTCAGATTCTTCCTGTTTGACTTTATTTCATCATCATTCACTTCAATTGCTATAGATACATTGTTCTAACAGGCTGTTGAAGATGGAGAGAAGAATTAATACTCATGCACTGCTTGATTATGTTGAGCTCCAGATATTTCCGAGCGATAACAGGTATGAGGCATGTGTATCAACTAGCAATATAATTGAAAAGGTGGCATCTGGAGACTTGCAACAACTGTTGTTGCATCTACCTCAAGTCAAAGATTTGTCGTCCAAAACCTCTGACTCAAACTTCAGAATTCTAACACCTGAAGATGTCAGCAATGCTGACTGGTTTACAATTGCCACATTAACAAGATTCTTAAACATTGCTGGTTCACCAGATGTTCTTAGTATTGGAAACGAAATTTCTCAATTAGAGGAGACCAGAAAATTCCAACTTTCATTGTTTGCCAAGGCTGAAGTTGATATGACATCATCCTTCGAATCTAAGAATGAACTACTGCGAGCAGTCTATTCAAGGCTCTCAGGCTTGAAAGAACAATTGGCTGAAGCCCTCAACAAGGCTACCGGTATTACATGTTCGCCTCAAGATATCTCCAACTTGGAAAACTTTGCTCATCATTTCGGAGCAGAAGATATAAGGGACTCGTTACAGAAGTTTTTAGAACTGAGTCAATTCCCATCATCGAAAGACTCT | |||||||||
gi|125444991|gb|EL456687.1|EL456687 CHTM9755.b1_F15.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM9755, m ATTTGAAGGATGATTTCAAG EST sequence (targeted fragment marked with yellow): CTTCGGCGGGGGGCGCGTAGCCTAACCATCACAACACAACACAAAACAACAACAACAAGAATATTATTATTATTATTTTGCATAATTTCTTTATCCAAATCATTCATATTCAATTTCAATTTCAATTTCCTGCATATTGCTATCAATTTCTACACAATCATCTCCTATTATTGATCGGCCGGTGTTATCATGATTATCCGTTCATCATCGCCGGCCACTGGCGACCACTCCGCCGTGGTTTTCTGACGTCACGCGGTTTCCGTAACCCTAGATCTCGTTTTGTATACGCTGAGATCGATAAATTTCGATAGTCAGTTTAGGTTTTTTTGTTAGGTAATGGATTTGGATGAATTTAAGGCGATTTTATCGAATTCAACGGCCGATGTTTGGGGAATCATTGATGCGGCGATAACCGTAGCTTCGACGGAATATTCCGGCGAGCTTAAGCGGCGGAGAGACGGAATCGTGCAGCGGCTGTACTCCGAACGGTGTAGTAGTTGCGACGTGGATCTGAATGAGCAGATTCCGAACGGCGTTGGCCGGAAGGTGAACGATGACGTCAGAGGAGGTGATGATGACGTCAGAGGAGGTGATGATTCGCCATTAACTCCGCAAGAGGATGAAGATGATGAACCAGATCCGTATGGAGGTTTGTTTGATGATGAGCAGTCTAAAGTTCTGAGAATTAAAGAGCAGCTTGAGGATTCAAATCAGACTGATGATGCTATTGCTGATTTGCTTCAAATCCTAGCTGATATGGATCTGACTTTTACAGTCCTTAAGGAAACTGATATAGGAAGGAATGTAATCGACTTCGAAAGCATCCGTCAAATGAAGTAAGAGGACTGGTGAAGCAATTGGTGAGGAAATGGAAGGG | |||||||||
gi|125446637|gb|EL458333.1|EL458333 CHTS11780.b1_G18.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTS11780, ATTTGAAGGATGATTTCAAG EST sequence (targeted fragment marked with yellow): GCTTCGCGGGGAACGAAGATCGATATTTTTCGGGAACAGGATTGAACATTCTTCAACGGTTTACAAATGTGCAGTGGACGCGCTTCCGTCCAGTTTCAGCTTGAGAACGCAGTTTTTGGAGATACTAGAGGCAACCGATTTGGCGAATTCCGAAAATATGCAAAACGAGATTCTTGCTGACATGAAAAACGAGTCTTCGAAAGAACCAGCATATTGGGACTGGCTTGCAAAGTTTGAAGCAGCTGGGCGTAAGAGTACACAAGATGTAACGTTAGAAATTACGCCTGATCAGTTGGTCAACGCGGTTCAGGTTTTTGATGAGGCTCTGAAGGTCATACCGTCATCTACAATGTTCGATCTATATATCAAGTTTATGATGAACACAATTGGTAAAAACGGACATAATAAAAGTTCTAGCATAGACCCCGTTACACATGTTTTAACGATCTTTGACAAGGCTCAAAGCATGGGGTGCATCTCTGAAGATCTTGCTTGCCAACACGTTTCGTTTTTGTTACAACTTGAAAGATTAGACGATGCTAGAAATTTGGCAGAAAAACTTTGCAATGGAGAACTTTCGGAAGCGGTAAATTTGTGGGTTTTACGACTTTCGATAGAGATTAAGCGAATTAAAACACCAAGCAAAGGTGATTTGTCGTATGTGTTTGATCTCTTGCAAAATCCTTTGAGGAAAGTTTCTGTTTCGCAAGCTGAGAACCTATGGCTAATGGGCTTGAAGTATTTTTCAAATCACAAACATTATTTCGACAAGCTGGTGGATATTTCTCTAACTTCATTGATCAGAGATGGTGGTAGTGATGACGGATTTTCTCTTTCATCCCGCATTGTAAACTTTTGTCTACAAAAGATGA | |||||||||
gi|125432808|gb|EL444780.1|EL444780 CHTM21625.b1_B07.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM21625, ATTTGAAGGATGATTTCAAG EST sequence (targeted fragment marked with yellow): TAAATGGAGGTCACTTTGAATGTCGAAAAGATTCCTATTTTGAAAGAGTTTGTTGACCATTTGACCAAGACTATGCATTCTGCAGTTCCTGGATCTTTAGTTATATGGTATGATAGTGTTACGACTGACGGTCAACTGAATTGGCAAAATCAATTGAACGACAGTAACAAACCCTTTTTTGACGTATCTGATGGCATATTCTTGAACTATTCCTGGCAGGAAGATTACCCAAGCCTCTCCGCTGCTGTTGCTGGTAACAGAAAGTTCGATGTCTACATGGGAATTGATATTTTTGGTAGAGGTTCTTATGGTGGCGGACAATGGACAACAAATGTGGCACTTGATGTAATAAAGAAGAATGATGTGTCAGCAGCCATGTTTGCTCCCGGATGGATTTACGAGACACAGCAACCCCCTGATTTTCAGACGGCTCAGAATCGGTGGTGGGACCTTGTTGAGAAATCGTGGGGAATATCTCAAATATATCCTAAAGTTCTTCCGTTCTACTCAAACTTTGATCAGGGTCGTGGTTACCATTTATCTATTAGTGGCAATCTAGTATCAGATGCACCTTGGAATAATCTTTCGAATCAAAGCTTTCAGCCATATCTTGAGTTTTCTGGAGATACTGAAACCAAAACGCTTCAAGCATTTGTTGATTTTAAACAAGCATCATATAGTGGAGGAGGTAACATTACATTTAAAGGAGTCCTTGAAGGCGATGCTTATATTACAAAAAGAATTTTTCATGGCGAAATTCATTCAAGAAATTCACCACT | |||||||||
gi|125451489|gb|EL463184.1|EL463184 CHTS17632.b1_P16.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTS17632, ATTTGAAGGATGATTTCAAG EST sequence (targeted fragment marked with yellow): AACCGACTTCATTTCATTGGAGCAATATTCACATTACTACTGAGGGCTCCAATTCCTGCTCCATCAAATCATCAATGCGTTTAATTACCCAGATTGCTTTACTCGTGTCGCATTCAACGAACTTCTTGATGAGTAGATGCCGCGCGAGTTACACTCACAGCCAGATTCTCAACCCCTCTCAAACGCCTTCAAAATACGCTACAAAGCATCCAGTCGGTCCTTCATGAACACTGGAGGGTCAATCGTCCTCACAAAGAGATCATAGATGTTTATCTCTCATCTAAAGAGAGAGAAACCGCTCGTTCTCAGAACCTCCTCTATCACTTGGCATAATACATACCTACCACCTCTTCATTCACATCAACTGATGCGGATGAACCGCCACCTCGAGAAGCTCTTCCTGGCCGACCTGCATGTGCAAATTGCGAGGATTCCGACCGAAATACCCGATCTTACTAATCATGTCAGTGTCGTCTACCACCGAAGTCTTGCAGACTTCACATTGGATGCAAGGAGTCTCAATTACTCAATACCAGAGTCCATTAACAGAATGCGGCAACTTAAGGCTTTGACTATTAAACGAAATTGAGATCATCCTTCGAAGCTGCGAACATCTTCATCCATAGCCTCCTGTTTATCCTACCTAACAACTATCAGATTCGAGCACGTGACGGCACCCTCTCTTCCAACCGTCTTTGCATTCTGAAATCGAAGACACCTCTCTATTGCTATGAGTGATATTGGTGATGCTGTCCTGAGTTGTACCAC | |||||||||
gi|125435272|gb|EL446969.1|EL446969 CHTM25756.b1_G07.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM25756, ATTTGAAGGATGATTTCAAG EST sequence (targeted fragment marked with yellow): CGGGGTCGGATTGAGATGAGTTGCTGTCATTCTCGAATCATCTTCTTAACAGCATCTGCAGAACGATTTACTTCAGTAAGAGGAGCATTTCAACGAATTATAGAGCTAGAACACTTGTTTCTCCTTCACGCAATCGATTTACGAAGGGTTACTGCAAATTGTCGAGTTCTTTGAAGTCGGAACTATCTGGAACTGCTCCTGCTTTTTCTCGGAAAAATTTGGGAACTGTTGATGGAGAAGCACCACCACATGAAAGTACCTCCTTTGATTCTTCCCAGAAAACAGATAATTTAGTAAATACTGATCCTTCAAATGGTCGAGTGATGCTTATTGATGGCACTTCTATCATTTACAGATCTTATTACAAACTTCTTGCTAAATTACATCATGGGCATTTGGCTAATGCGGATGGCAATGGGGATTGGGTCTTGCCTATATCTACAGCTTTGTCACTCATAATTGATGTTTTGGAATTTACTCCATCACATGTGGCGGTGGTTTTTGATCATGATGGATTTTGCTTTGGTAATATGCCTCAGTCATCCAGACAAAGATTTATGGCAAAAGGTCAAACTTTTCGGCACACTCTCTACCCCTCATACAAGAGCAACCGTCCACCTACTCCAGATACAATAGTGCAGGGCCTTCAATACTTGAAAGCATCCATCAAAGCCATGTCCATCAAAGTCATTGAGGTTCCTGGTGTTGAAGCTGATGATGTTATTGGGACCTTGGCTGTACGCAGTGTAGATGCTGGGTTCAAAGTCAGAGTTGTCTCTCCTGACAAAGACTTTT | |||||||||
gi|125431050|gb|EL443022.1|EL443022 CHTM20005.b1_I09.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM20005, ATTTGAAGGATGATTTCAAG EST sequence (targeted fragment marked with yellow): CTCAGATTCTCAAGCCTTAAATCTTCACCATCATCTTTCTTCAATCCTAACCCTTTTCATTCGTTCTATCTACCCGACCCGACCCGAACCAACTACCTTTTAGAACCCCTAAAAACTTTTTTCTTGACAATTAACTCAACCCAACTAGCCACTCAAGCTTAAAGAAAGCTGGAAACACGATGAAAACATACATGAAAAATGGAAGCTTGATTATGTTCATTGCCATCTTGATGGGCTTTTGTGGTAACACAGAAGGTGCTGAAGTAACATGTGAACCTCAATATGGGTTCTTGCCATGCACAAGTGGTCTTTGGGGACAGCTTTTCTTGATCGTGGTTTATCAATACTTGATGTCTGTGGGTCAAAGTTATATTTCAAACGGGTCGGATAAGTTCTTCAGCCTTATTGGACCGGGTATCTTTGGTGCCGGGTTGTTTCATATCCTTGCAAACTTCCCTTTGCTTTACCTCATCCTTCAAATGGGATTATCAGCTAGCGATGACACAAGTGCATATTTTAGTGCTGCAATGGGAATGAATGTGCTAGCAGGGACAGCAGTCATGAGCCTCACACTTATTTGGCCGTCTGTTATAGTGTTTGGAAATTATGATCTTGCAGATGATGATGACACCATGGATTTACCACAACTTTTTGATGAAGAACCATCATATATAAAGAAACTGACAGCATATGGGCTTACAACTGATACCGAAACAAGCTACACTGCACGACTCATG | |||||||||
gi|125440788|gb|EL452485.1|EL452485 CHTM5293.b1_J04.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM5293, m ATTTGAAGGATGATTTCAAG EST sequence (targeted fragment marked with yellow): GGCGGGGATAAAAAGCGATCAGATTCTATGGAATTTCGTGTTCACTGGATCCTAATTCATAACCTCCTTTGAGTCATCCTTCAAACACCTCAAGGGTTTATATACCCACCTCGAATCATACCCACTTTTATCAATCAATTATTAGTTTGTAGAAAGTTTGAATTTTTATAAAAAAGAAGAAGAAAGGGTCATGGGGGGTTCCAAGATTGAGGGAGGAACCTCTTCTTCTTCTTCTTCAGCTGCTGTTCCTGTTGTTAATCGTAGAGATCCTTATGAAGTTTTGAATGTCTCAAAAGATTCTTCTGATCCGGAGATCAAATCTGCTTACAGAAAGCTTGCCCTCAAGCATCACCCCGACAAGAATGCTAGTAACCCTGAAGCATCAGAACTGTTTAAGGAGGTTGCTTTTTCTTATAACATTTTATCTGATCCAGAGAAAAGAAGGCAATACGATAATGCAGGGTTTGAGGCTATTGATGCTGATGGCACAGACATGGAAATCGATCTTTCTAACCTTGGAACAGTGAACACAATGTTCGCTGCATTATTCAGTAAGCTTGGAGTTCCTATTAAGACAATTATTTCAGCCAATGTTCTCGAAGAAGCTTTGACTGGATCCATCACGGTCAAACCCCTTCCGCTAGGATCGTCGATTAGCGGAAAGGTAGACAAACAATCCGCTCACTTTTTTGATGTAACTGTAACCGAGGAACAAGCTAAAGCAGGGATCGTAGTTAGAGTTATTTCAACCGCCCAAAGCAAATTTAAGCTACTTTATTTTGAGAAAGACGTTGGCGGGGGTTATAATCTGTCACTACAGGAAGACAGTGAGAAGATGGGAAAGGTGACATCAGCAGGGATGTATTTCTTGCATTTTTCAGTATATAGATTGGATTTTCAGTGTAATGCGTTAGAAATGGCTAAGGATCCCGAAGCTGCTTT | |||||||||
gi|125442781|gb|EL454477.1|EL454477 CHTM7149.b1_I12.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM7149, m ATTTGAAGGATGATTTCAAG EST sequence (targeted fragment marked with yellow): GCGGGGATAGCCGGCACAAGATCTTCGTGACTTGGGTTTTCTTGAAATATTCTTGAGATTTCAAGATTCTTGAAGAACTCAAAAGGGGCAACTTTCCGATGTGGGTTTGATCTGTTTCAAAATAATAAGTGAAAAAGTGTAAATCTTGAAGAGTTTAGATGGGTGTAATCAGTACTTTCTTGGGGTTTTCTGGGTTTGGAATTGGGGTTTCTGCTGGCCTTGTGATTGGTTATTATCTGTTCATCTACTTCCAACCTACAGATGTCAAGGATCCAGTCATTCGTCCGTTGGTCGAACGGGATTCCGAAACTCTGGAACGAATGCTTCCCGAGATACCATTGTGGGTTAAGAACCCGGATTTTGATCGGGTTGATTGGCTTAACAAGTTCATCGAGTACATGTGGCCTTATCTTGACAAGGCAATATGCAAGACCGCAAAGGAGATTGCAAAGCCCATTATTGCTGAACAAATTCCAAAGTTCAAAATTGATTCGGTTGAGTTTGAGCATCTTACCTTAGGGTCGTTGCCTCCTACTTTTCAAGGGATGAAGGTCTACGTTACCGATGAGAAGGAGTTGATCATGGAACCATCCTTAAAATGGGCTGGCAATCCTAACGTTGCCGTTGTTGCTAAATCATTTGGTTTAAAAGCAACTGTTCAGGTGGTGGATTTACAAGTCTTTGCTGCACCTCGTATTACGCTAAAACCACTTGTTCCTAGCTTTCCTTGTTTCGCTAAAATCTGCGTCTCGCTCATGGAGAAGCCACATGTTGATTTTGGTCTCAGGCTGTTTGGGGCCGACCTCATGTCAATTCCCTGGATGTAATAGGTTGTCCAGGGACAAATCAAAGATCAAGTTGCCAACATGTATCTTTGGCCTAGAACTCTAGGAGTACAAATATTGGATCCATCCAAGGCCCTGAAGAAACGGG | |||||||||
gi|125433166|gb|EL445138.1|EL445138 CHTM21956.b1_G17.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM21956, ATTTGAAGGATGATTTCAAG EST sequence (targeted fragment marked with yellow): CGAAGGGATGTATTTCTTGGAATGTGATGATATCTGGTTATGGGTTGCATGGAGACGCCACATCAGCGATAGATACGTTCCGAGAGATGGAGCTGTCAAACGTTAAACCAAACGAGCTTACTTTTCTTGCGCTTCTTTCAGCGTGTAATCACGCAGGGCTTGTTGACGAAGGAAAATCTTTATTTGGGAGAATGGTGGATTATTATTCTCTGAAACCAAGCCTTAAACACTATACTTGTATGGTGGATCTTCTTGGTAGGTCAGGTGATTTGGGTGAGGCTGAAAATTTGGTATTGTCTATGCCGGCTGGAGTAGTTCCTGATGGAGGTTTGTGGGGTGCCTTGTTAAGTGCCTGTAAAATTCACAACAATCATGAAATGGGTATCCGGATTGCAAAACGAGCAATTGGATGTGAGCCGAAGAATGATGGATATTATATAATCCTTGCAAATTTGTATGATTCTATAGGGATGTGGGAGGATGCTGAAAGGGTGAGAAAGTATATGAAGGAAAGGGGAGTTGAAAAGGCAGTTGGGTGGAGTGCAGTGTGACCGGTTAGTAGAGGGGATCATGTCGGCGATACGTAAATGGCGGGAGACAAAGAAAGGAAAACCGGCTGCTACGGGGACATTACTGGAAGACGAATGAAAGGAGGGAGAGACACCGCTAGATAAAACTTTCGATTTCTGAGGAACTTCCGTCAAAATGAGTTGGGGAAGAGGGCGTTCCAGCCATTCTTGTCGAGCTAAGTGTAAAAAGGGAACACTTAAAATCGTGCTGAAAATCATTTTTCAAATTTAAGTACCCTCGATGAATTCTTGAATAAATTCAG | |||||||||
gi|125430370|gb|EL442342.1|EL442342 CHTM19027.b1_E06.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM19027, ATTTGAAGGATGATTTCAAG EST sequence (targeted fragment marked with yellow): TATATTTGTTAATTTCCACACAAAAAAAAAGAACTTTCTGTTTTCAAGAATCATTCTTTTTTCCAAATTCCATAAAAAAGCGATCAGATTCTATGGAATTTCGTGTTCACTGGATCCTAATTCATAACCTCCTTTGAGTCATCTTTCAAACACCTCAAGGGTTTATATACCCACCTCGAATCATACCCACTTTTATCAATCAATTATTAGTTTGTACAAAGTTTGAATTTTTATAAAAAAGAACAAGAAAGGGTCATGGGGGGTTCCAAGATTGAGGGAGGAACCTCTTCTTCTTCTTCAGCTGCTGTTCCAGTTGTTAATCGTACAGATCCTTATGAAGTTTTGAATGTCTCAAAAGATTCTTCTGACCAGGAGATCAAATCTGCTTACAGAAAGCTTGCCCTCAAGTATCACCCCGACAAGAATGCTAGTAACCCTGAAGCATCAGAACTGTTTAAGGAGGTTGCTTTTTCTTATAACATTTTATCTGATCCTGAGAAAAGAAGGCAATACGATAATGCACGGATTGAGGCTATCGATGCTGGTGGCGCAGACATGGAAATCGATCTTTCTAACCTTGGAACAGTTAACACAATGTTCGCTGCATTATTCAGTAAGCTTGGAGTTCCTATTAAGACAACTATTTCAGCCAATGTTCTCGAAGAAGCTTTGACTGGATCCAACACGGTCAAACCCCTTCCGCTAGGATCGTCAATTAGCGGAGAGGTAGACAAACAATCCGCTCACTTTTTTGAAGTAACT |