miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: GACAGAAGAGAGTGAGCAC
species: Helianthus tuberosus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|125451091|gb|EL462787.1|EL462787 CHTS1727.b2_N23.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTS1727, m 

GACAGAAGAGAGTGAGCAC
|||||||||||| ||||
CTGTCTTCTCTCCCTCGCA

EST sequence (targeted fragment marked with yellow):
AGGGAGGGGGGTATGGATGATAAGTTTTAAATGAGATGATGGAAGAATGGATAGAGGATGATGATCATGATGATGATAGGAAGAAGGGTATAATGGGAAAGAAGAGTTCTAGTAGTAGTAGTAGTAGCTTTTGCCAGGTGGAAGACTGCTCAAGTGATATGAGTCGAGCCAAAACATATCATCGGAGACACAAAGTATGTGAGTTTCATGCTAAGGCTCCAATCGTTGTCATTAGTGGACGCCAACAACGTTTTTGCCAGCAATGCAGCAGGTTTCACGACTTAACTGAATTTGATGATGCCAAAAGGAGTTGTCGTAGGCGCTTAGCTGGACACAACGAGCGCAGGCGTAAGACCTCCTATGGAGAAACTTCTGGTTAATGATAATGATAACGATGATATTATTATCGCCAAATAAGACTTTCTTATATATATGTCCGGTAGCAGTAGCGGTAGCCACGCTCCCTCTCTTCTGTCAGTCCCTAAATATATCTATTTCAATGCATGGCCATACTTGTACTAAATAACGCAATGCTAATAAATTAAAGAAACCTTCC


gi|125456278|gb|EL467971.1|EL467971 CHTS6666.b2_D11.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTS6666, m 

GACAGAAGAGAGTGAGCAC
|||||||| ||| ||||||
CTGTCTTCCCTCTCTCGTG

EST sequence (targeted fragment marked with yellow):
AAATCCGGAAGGGTAGTTAGAAGCATGAACAACTTGAAAAACGAGATGATGGAAGACGGAGAAGAAGACGATGATGAAACCTACGGTGAGAGTACCCGAAAGAAAAAGGTGACGGGAAGGAGGGGTTCAAGTAGTGGTAGTGGTAGTATGCAAGCTTTCTGTCAGGTGGAAGGTTGTACAAATGATATGATTAACTGCAAGACGTACCACCGGCGACATAAAGTTTGTGAGGTTCATTCTAAGGCTCCAATTGTTTTCACCGGCGGATGCCAACAACGCTTCTGTCAGCAATGCAGCAGGTAAAAGAAACATTTTTTTTTATAAATACTTGCCGTTAAAACTAGCTACAATGTGTATTACTTTTGCGGCGGTTTCTGCAGGTTTCATGACGTAACGGAATTTGATGATGCCAAAAGGAGTTGTCGTATGCGTTTGGCTGGCCATAATGAACGCAGGCGTAAAAGCTCTTATGAGAATTTCGGAGAAAGTTCTTGAATGTTCGAGAAACGAAGGTTGTTCATGATGAATGAAGGTGGCTCACCGACTAGTGATATCATAAGACGTATATGTCTATATTTGCTATCTATTGTGCTCTCTCCCTTCTGTCACGCATAAGTAAATATAAGGATTATTAGGATGTATAACTAAGTGAAGCAGTTTACCAATCGTACTATGTGTGTTTATGATCGCTTTCTGGGTGCAAAATGTAAGTAAAGATAATATTAATGTTGAGAATCAAGTGCTTC


gi|125435834|gb|EL447531.1|EL447531 CHTM2628.b1_H10.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM2628, m 

GACAGAAGAGAGTGAGCAC
||||| |||||||.|| |
CTGTCATCTCTCATTCTTT

EST sequence (targeted fragment marked with yellow):
GTTGAACTCATATCCTTCGGCCTTGACTGAACAAGCAAACACTCCAAACCGTCCACCCAAATGAACATCCAAATCCACCCAACCGCCAATTTCACACTCTCTTCTCGTAACCCCCGCATCTTCTTCCTCCCTCAATTCCCCCCAAACCCACAAAAGATCCCCAAACACACTTACGCCACCAAACCCCTGTTCAAAACCCTCATCAAATGCTCACAAACCAGTGATTCTGACCCACCAAAATGGGAAAAACTGCTGCCAAAAAATATTATCTCAGCTGACAAGATCCTCAGGTCCATTGCAGGGGCAACTTCTAGCCCAATTTGCCAGTTCATATCTTCACCCACCACTTTCTTGCACTCTGTTGATCCCAGAATCAAATTGGCATGGCTTCTGGTTCTAGTTGTTATCCCCGCAAGAACACATATATACATGCGATTCGGATTAATCACGTTTCTGGCCACATTGTCTGTATGGATACTGCCAAGACAAGTTTGGGTGGATCAATTGGGAAGAACCGCTCTATTATCTGGGATTTTGTTCTTAATGGTGGGGCTCGGTGCAGATAGTGTTCCAATGGTGGTTCAGTCAAGAACTCCACCGCCATCGATGATGGGCTTGCCGAATATTCCACCGTCTTTTGATGGTTATTCCTATCTACTGTTCAAATTAGGACCGCTGCAGCTTACGAGAAAAGGGTTGTCTCTAGCGAGTACAACAGCTTGCTTAACTTTTTCTATTTTTCAAAGTGCAAGTCTTTGCTTGACAACTACTACACCAGAACAACTCGCGTTTGCTCTACAAATGGTTATGAAGCCTTTGGCATATGTTGGTGTCCCGGTGGCTGAAAGTATTTCTTACTCTCTACTGTCATAAAGAATTATCAACCTAGTATTCGATGAAGTACGGATTGTGGCATTGG


gi|125444072|gb|EL455768.1|EL455768 CHTM8423.b1_N18.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM8423, m 

GACAGAAGAGAGTGAGCAC
|| |||||||| |||. ||
CTTTCTTCTCTAACTTATG

EST sequence (targeted fragment marked with yellow):
AACATGCAATCAGCAAAAATGGATTCAATCGTTCATCTACCAAACCCTAATCACACTCTCACTCAATCTGCTACATATTTTGCTTCTATCCGACAGATTAATCATCTCTCATCACAAAATTACACTCAAGAAGCATCCTGATCTTCCTCTACGCTTCAATTCAGACGGAACCTTCAAGATCCTTCAGGTAGCCGATATGCATTACGGAACCGGACTGACTCGGTGTAGAGATGTTTTGAGCTCTGAGTTTGACTCCTGTTCCGATCTTAACACAACTCGGTTTTTGAAGCGGATGATTGAGGCTGAGAAGCCGGATTTTATTGCTTTTACAGGTGATAACATATTTGGGTCAAGCACTAATGATGCGGCCGAGTCACTATTCAAAGCTTTTGGTCCAGCAATGGATTCCGGGCTTCCATGGGCAGCGGTTTTGGGCAATCATGACCAAGAATCAACTATGACCCGTGAAGAACTGATGTCATTCATCTCCCTGATGGATTATTCGCTTTCACAATCCAACCCGTTAACTCAAGATCCCACAGACCCTACTAAACAACAAATTATGACACAAATCGATGGGTTCGGGAACTATGATCTCAGTGTATGGGGTCCCCCAGGGTATCAGTCGGCCAACCAGACCGTATTCAATCTCTTCTTTCTAGACAGTGGGGACAGAGCTGTTGTTGATGGGTTTAGAACGTATGGATGGATCAAGGAGTCTCAACTTAATTGGCTACGTGGTGCTTCTAAGGATCTCACTAACAGGGACATAACCAAGAAAACCATCAATCACAAGAGATTCCATCACTAGCATTCTTC


gi|125459183|gb|EL470876.1|EL470876 CHTS9514.b2_D04.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTS9514, m 

GACAGAAGAGAGTGAGCAC
.||||||||||..|||||
TTGTCTTCTCTTGCTCGTC

EST sequence (targeted fragment marked with yellow):
TCTTAGAGTCTCAATTTGCCGCCTAAATCTGAGAGGACAAATGAGACGTCAAGTAAAGACATCTTAGCTAAGCCGTATGTTGAACCTAGCGATGAAAATGTTGGAGAAAAACAAAGGAAAAACACTGTTTCTTTGGTTGAACCGCCTGTGAATGGAAGCGAGGTTGGACATCCTGGCACAGATGTGGTGGTTGCAGAAGTTGAATACATCGAATCTGACAAACTGAATGATCTAGATGATATTGATGAGTGTCTTAAGGTGCTTTTAGATGGGTTAGGGTCTAAAGACTGGGTCTTGCTTTGTGATACACTCAACAATGTACGTCGCTTCTCAATATACCACAAGGAAGCATTGCAAGACATATTGGACAATGTGATTACCCTTGTTGTGAAAGCCCTGAAGAATCCAAGAAGTGCTGTATGTAAAACAGCCATCATGACATGTGCAGACATTTTCAAAGCATTTGGGGATACCATAGTTGATTCGTTGGATCCTTTGTTGGTACAACTTCTTCTCAAGTCTTCTCAAGACAAGCGGTTTGTATGTGAGGCTGCTGAAAAAGCTTTAATAGATTTGACAATTTGGGTCTCCCCTGTTTTGCTGTTACCCAAGTTGCAACCTTACCTTAAGAACCGCAATCCCCGTATTCGTGCAAGGGCTTCAATGTGCGTTTCTCGTAGTGTACCACGATTGGGTACCGAAGGAATCAAAGATTACGGGATTGACAAATTGACTCAAATAGCTTCATCCCAACTGAGCGACAAGCTCCCTGAGTCACGAGAGGCTGCTCGTTCTCTTCTGTTGGAGCTACA