| mature miRNA: GATCATGCGATCTCTTCGGAA species: Helianthus tuberosus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|125439446|gb|EL451143.1|EL451143 CHTM4048.b2_O04.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM4048, m GATCATGCGATCTCTTCGGAA EST sequence (targeted fragment marked with yellow): GCGGGGATCTAAAACAAAAAATAATAATAATAACAACAACCTTCTCCAAGAAGAACAACCACCCCAAACATTCTCCGGTAACTCTCTCCGGTGACGTTTTTGTGCCGGACGAGAGATCACGGCCAAGGAGCTACCATGGCTGTTGAAGCTCAAAGAAAGGAGGATATAATGGGTGAATTTGAAAAAGTTCCTTCAAATATTTTAATACATGGAGAAAAAGATGAAGAAGTTCAAGAAGATGACTACTACAGTTACTCTGATTCTGTTGATGAAATGCGTTCCGAAAATAGCTGGTCTGATTCATCCCCTCAGTTTCAGGATATTCCTCCTCCCAAGTTCTCACTTGCTGTTGATTTTTTGAAAAGATTGCATGGTTTAGTAGCGCAGAAAAAGGGTGGTGCAGCCTTGGAGGATATTGAGTGGCAAGATAGTTTCTTAAGCAACAATGACTTATCATTTCCAAATGATCCAACCGGCGAACTGCCTAATAGTTGGGGAGCTGCAGAGGCCATGACGTTTCAAATTCGTGGTGCCACTTATTTGAAAGACCGTAAGAAGGTCAAGGTAAAAGACACATTGATGCAACTTGTTGCCGCAAACATGCTGAGATCAACTAACAAACAAGATGATTTCGCTGGCCGGCCTGGCAGCATTTGTCAGAAATTTGCTGCTGCCAACCAGCCGGATTTCTTTTTCATTGTAAATATGCAGATCCCGGGTCCAACAACAAATTTTCACATCGCTTTCTATTATTCAACAACTACTCCCATCAAAGATGTGCCATTGCTAGAGAACTTTGTAGAAGGTGATGATGCATACAGGAATGCAAGGTTTAAGCTCATACCTCATGTATCTNANGGTCCATGGATTTGTAAGTCAAGCGTTGGAAATAGACCCTGCCTGCTCGGGCAAG | |||||||||
gi|125440467|gb|EL452164.1|EL452164 CHTM4999.b1_M01.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM4999, m GATCATGCGATCTCTTCGGAA EST sequence (targeted fragment marked with yellow): GCCTTTCTAACCCATTCCACTTCCACTTCCACCGCTCATCAACGCCCCAGATTGATTATCACTCCCGCACCTTCAATTCAACCATAAAGATGGAGTAAGTGTGTTCCTTTTCAAAAGCTATTTTCTAATACGTGCGCAGTATTAGATGGAACTGAAATTACAATAATGGACAAGTCATCTGACAGTCAAGAGTTGACCAACGACTCCAACAGTGGAGACGTGTCTAATCAAGAAACAAAATCCGAGTCAACAAAAGTCAAGGAGTCTCACGATAGTTCTAACCAAGAAGGAAGTTCCACAACCATACAACACAACAAAGAGTTAGACGCTCAACATGATAAACCTACTTCTCATAACGAAAGTGCTAGATCAGAATTTCTACAAGAAGAAAACACGATGGTTATAACACCAAAAAACGCCACTAACACTTCACAGCAAGCTCCCGCATCAGAATCCGACAATGAAAGGTTTATTGTGGCGTTAAGGCCTGAAAAAGGGCTCGATAAACTACCACTAAGACGTAACGCTGACAATGTTACTGTTGCACAATCCGCACCTTCTGATCAAGGTGTTACGTTCTCAAAACTACCTGAAAAACCAACTGGTGACGGATATAACTGGAGAAAATACGGTCAAAAGCTTGTGAAAGGGAATACGTTTATTCGAAGCTATTACAAATGTACGTTTGCTAGTTGTCCAGCGAGAAAACAAGTGGAACGTACACACGATGGAAATATTACGGAAATAAATTACTTATGGAAGCATGAACACCCTAAACCTCCACATACGCTTGTTAAAGGCTCGGCTTCTGTTCTGCCTCTTCAATCAAAAGCTTCTCACGAGCCTTCTGAAGACCATTCATCTGTGCTTCCGGCGACATCTCATGATCAAGAGGTGTCGGAAACGGACACGCATCAACTTGCGGTGCATCCTGTAAATGATAATAATGTG | |||||||||