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mature miRNA: TCCAAAGGGATCGCATTGATC
species: Helianthus tuberosus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|125443727|gb|EL455423.1|EL455423 CHTM8067.b1_E01.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM8067, m 

TCCAAAGGGATCGCATTGATC
 |||||.||||||| |||| |
TGGTTTTCCTAGCGGAACTTG

EST sequence (targeted fragment marked with yellow):
CTTGGAAGAAGGAGAATTAAGGATCTGGTGAAGAAGCATTCTGAGTTCATCAGCTACCCGATCTATCTATGGACCGAAAAAACAACCGAGAAAGAGATAAGTGACGATGAAGATGAGGAGCCTAAAAAAGAAGAGGAAGGTGACATTGAGGAAGTCGACGAAGAGAAAGAGAAAGAGAAGGGCAAGAAGAAGAAGATCAAGGAGGTTTCTCATGAGTGGGAGCTTATCGACAAACAGAAACCGATCTGGCTTCGCAAACCTGAAGAGATCACCAAGGAAGAATACGCTGCGTTCTACAAGAGCTTGACCAATGACTGGGAAGAACATCTGGCTGTGAAACACTTCTCTGTTGAAGGACAGTTGGAGTTCAAGGCGATCCTTTTGGTACCTAAGAGGGCTCCATTTGATTTGTTTGACACTCGTAAGAAGATGAACAACATCAAGTTATATGTCAGAAGGGTCTTCATCATGGACAACTGTGAAGAGCTAATTCCGGAATACCTTGGGTTCGTGAAGGGTGTGGTGGACTCTGATGACTTGCCACTCAACATCTCTCGTGAAATGCTTCAACCGAACAAGATTCTTAAGGTTATCAGGAAGAATCTTGTGAAGAAATGCATTGAGATGTTTAATGAGATTGCTGAGAACCAGGATGATTACCACAAATTCTATGAAGCCTTCTCCAAGAATCTGAAGTTGGGTATTCATGAAGACAGCCAGAACAGGTCCAAGTTGGCTGATTTGCTTANGTACCATTCAACCAAGAGTGGGGATGAGTTGACCAGCTTGAAAGACTATGTGACCCGTATGAAAGAGGGC


gi|125458330|gb|EL470023.1|EL470023 CHTS8645.b2_I02.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTS8645, m 

TCCAAAGGGATCGCATTGATC
|||| ||||||||||||||.
AGGTGTCCCTAGCGTAACTGA

EST sequence (targeted fragment marked with yellow):
GCGGGTTCAGGCTGCCGAACTAAGGAAGCTCGAGATACGCGACTGCCCGTTTGGAAACGCTGCGTTGCTTTCGGGTTTGACCAAATACGAGTCAATGCGATCCCTGTGGATGTCGGCTTGCAATGTGACTATGAACGCATGTAGGGTGTTGGCTAAAGAAAGACCGAGGTTAAACGTTGAGGTCATGAGAGATGAGGAAGGTGGTGATGATAGCCAGGCTCATAAAGTTTACGTTTATCGAACCGTTGCTGGACCTCGTAGGGATGCACCACCATTTGTTCTCACCCTCTGAGTTCAACACCCTTTAGATGTAAATCTGAATCTGGGAATTTGATGGGTGCAAATGATGAATAAGATGTATACACGTCAGACTCGTGATCAGGGGTAAAATCGGTATTGATAAGATTCGTAGTTTCAACGGGTAGTCGGGTGAAGACGAAGATGATGATGAACATCATGCATCATAGGCTTCTTCTTTCTGATTTATATTGTTAGAATTCAAAATCTTTGTGTGTAAGTAGGTATCTTGTTCAACTGAAGTTTAAATTCAGAATTTATGTCTGAAAGTCATCTACTTTCTGGCCAGATTTGGTTGTTCCAAGGATATTTAAAGGTTGTTTAGATGTTGGTTTTNNNAAAAAAA