mature miRNA: TGATTGAGCCGTGCCAATAT species: Helianthus tuberosus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|125438360|gb|EL450057.1|EL450057 CHTM3061.b1_J22.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM3061, m TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): GGCGGGGGCGGCGGCGTGGTGGCTGCACCACCACTACTACACCAATGCTAGGTGTCTCCGGCAACCCATCCCACCAAAAGTGGCCGGAGTTGCAACCCATCCCACCTGAACTTGAACTTTTACAACAAAGATTTGGTGTTGGGTTGGAAGACTTTGAAAGTTTGTTATCTGAATCTGCACAAGACCAGTCTCTCCGGTGGATCTCCGGTGACTTTGATGACTCATCTTTGAGCTTACAACAGCTGTTGCAGTGTAACCAAATTGACCAAAATGCCCCTCCAGCCACCCTGTCTGAAAATTCACCAAATCCCAATTTGTTGCCACCATTGCCACCTCAAGTGCAGTCCTACCACCACAATCTTCAGAAATCCCCTGTTTCTGATCTGGGTCATCGAAAAGATTCAATTTTGAACCAGGGTTTTGAAAAAGTTCCGATTTTGAATCCGGGTTTTCAAAAAGATTCGATTTTGAATCCGGGTTTTCAAAAAGACTTTATTTTGAATCCGGGTTTGCAAAAAGTTTCTATTTTGAATCAGGGTCAAGAGTTACTGCTCAAGAAATCGTCTCCGGTGGTGGTGGTAAAACAAGAACCACCACAAAGTTCGGTACTGCCATCCCACCACCACCACCACCAGTACCAGGTTATCTGTGACCAGTTATTCGCTGCGGCTGAGCTAATGCTCTCTGGGAACCTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGTTCGCTTCGGGTCCGACTCCAAGTAAGCCTTTTCAAAGGGCGGCTTTTTATTTCAAAGAAGCCATGCAAATGCAATTACAGTCGAATCTGAATCCGAACAGAATTACTCCACATTTTAATGGCATGTTCAAGATGGGAGCTTANTAAATGTTTTCTGAAGTTTCTCCCGTTATTCAGTTTATGAATTTCACCTCGAACCAGACACTTCTTGAAGCTATTGCAGATGCTAAAAACATTC | |||||||||
gi|125431128|gb|EL443100.1|EL443100 CHTM20078.b1_L03.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM20078, TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): CACCAAACCCACCATCAAAATCAAATCTTTTCACCGTTAAACGACACCCAAATGCTCCCTCTTGACATTAAACCAAATCTTTTCAACACCCACCTGCCATTCGAACAACAGTTCTTGATGCCAAGAAACAACAACAACCACCACCACCCAGTAAGCATAGAGTACAACCCTCCAATGCACAAGAACCCGCTGCTTGAATTGGGTTCCACTCAACTTCAAAAATCACCAAAGCAACAGCAGCAACAGGGGATCATTGACCAGCTTTTCAAAGCAGCAGATCTGATCCAAACAGCGAATAATCCGATACTCGCGCAAGGGATATTGGCGCGGCTCAATCATCAGCTTTCACCAGTCGGTAAGCCTTTCGAAAGGGCTGCTTTTTATTTCAAAGAAGCTCTTCAGTTACTCATACATTCAGTGCTAAACAACATCAACCCTCCTCAACTTCCTACCACCACTGCTTGTAATTCCCCTTTTAGTTTAATCTTTAAGATTGGTGCTTACAAATCATTCTCAGAAGTTTCCCCTTACATTCAGTTTGCTAACTTCACTTGCAACCAAGCGTTGCTCGAATCCCTCAACGGCTTCGATCAGATTCATATTATCGATTTCGATATCGGGTATGGCGGTCAATGGGCTTCTCTTATGCAAGAGCTTGCTTTAAGGAACAATGGTGTGTCTTACATTAAGATTACTGCTTTTGTGTCACCATCAACTCATGACCAGCTGGAACTCGGATTGACCCGAGAGAATTTGATCCATTTTGCAAGTGAAATCAA | |||||||||
gi|125444807|gb|EL456503.1|EL456503 CHTM9565.b1_J16.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM9565, m TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): AGTTCTACCACCACAATCTTCAGAAATCCCCTGTTTCTGATCTGGGTCATCGAAAAGATTCGATTTTGAACCCGGGTTTTGAAAAAGTTCCGATTTTGAATCCGGGCTTTCAAAAAGATTCGATTTTGAATCTGGGCTTTCAAAAAGACTTGATTTTGAATCCGGGTTTGCAAAAAGTTTCGATTTTGAATCAGGGTCAAGAGTTACTGCTCAAGAAACCGTCTCCGGTGGCGGTGGTAAAACAAGAACCACCACAAAGTTCGGTACCGCCATCCCACCACCACCACCACCAGTACCAGGTTATCTGTGACCAGTTATTCGCTGCGGCTGAGCTAATGCTCTCTGGGAACCGCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGTTCGCTTCGGGTCCGACTCCAAGTAAGCCTTTTCAAAGGGCGGCTTTTTATTTCAAAGAAGCCATGCAAATGCAATTACAGTCGAATCTGAATCCGAACAGAATTACTCCACATTTTAATGGCATGTTCAAGATGGGAGCTTATAAAATGTTTTCTGAAGTTTCTCCGGTTATTCAGTTTATGAATTTCACTTCGAACCAGACACTTCTTGAGGCTCTTGGAGATACGAAAAACATCCACATCATCGATTTTGATATCGGGTTTGGTGCGCAGTGGGCAGCCTTCATTTAAGAACTTCCGATTACAAACAATGGCAGTGACAGTGGAGGATGTTCGCTAAAGATTACCGCGTTTGCGTCACCTTCAACACACCATCCCCTTGAACTTGGACTTATGCACGAAAACTTGTCACAACTCGCTCAAGAAATTGGGATTTCTTTCGAGCTTGAAGTTGTGAACTTTGATTCTTTCGATCCGCGATGGTTTTCAGTTTCTGAAAACGAGACAATTGCTGTGAATTTCCAATTTTGGTCGGCTTGCACTCGCTTATCTGCAATTC | |||||||||
gi|125458401|gb|EL470094.1|EL470094 CHTS8717.b2_I20.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTS8717, m TGATTGAGCCGTGCCAATAT EST sequence (targeted fragment marked with yellow): GCGGGGCGACGAAAAAGAAGAATACTTAGAGCAAGTTCTATCAAGAAATATGGCAAGAAAAGTAGTCTCCACACTGTTGCACAACCAAATTCTGTTGATCTTGATCTTATTAATCAAAGTGGCCATCAGCATGCAATTGCATATGTGGAAGGAGAGTTTTATGGAGCAAAAGCAACTATGAATGTTTGGGACCCTCAGATTCAACAGTCTAATGAATTCAGTTTATCTCAAATTTGGTTATTAGGAGGCTCATTCGCTTCGGATCTCAATAGCATTGAAGCGGGTTGGCAGGTCAGCCCAGATCTTTATGGAGATAATAACACCAGATTCTTTACATATTGGACTAGTGATGCATATCAGGCCACAGGCTGTTACAACCTTCTGTGTTCAGGATTTGTTCAAATCAACAATGAGATAGCATTGGGGGCCAGCATTTCTCCTATTTCTAAATATCATGGTTCCCAATATGATATCAGTGTACTTATCTGGAAGGACCCCGAGCAAGGAAACTGGTGGATGCAATTTGGTAAAGGAAATGTGCTCGGATATTGGCCCGGCTCACTCTTTTCTTACTTAAGCGAAAGTGCATCAATGATCCAATGGGGCGGTGAGGTGGTGAACTCCGCCTCTGACGGGCAGCACACCACCACCCAAATGGGAAGCGGTCATTTCCCCGAAGAAGGCTTTGGTAAGTCTAGTTACTTCAGAAATGTTCAAATAGTAGACGGATCAAACAGTCTTAGAGCCCCAAAAGATATAGACACGTTCACTGAGCAACCCAATTGCTACGATGTTCNAACCGGCAAGAATGATGGTTGGGGCAGCTACATTTACTATGGTGGACCGGGCAGAAACGCGAACTGCCCGTGAAATTGATAGTTATGGAAGTTCATTAAATTAATGAACTGGTGTATTTGGAATATGTATTATGTAGATTCTAAATCAGTTTACTTCATACGAGTA |