| mature miRNA: TTAGATTCACGCACAAACTCG species: Helianthus tuberosus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|125452700|gb|EL464395.1|EL464395 CHTS2955.b2_E20.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTS2955, m TTAGATTCACGCACAAACTCG EST sequence (targeted fragment marked with yellow): TTTGATTTCACCGTTTGTCGCGGTTTCGGAGGCCTTGGAACGAGTAAGCCAACACACTACACGGTGTATTTGGGATGAGATCGGGTTTTCATCCAATGAGATTCAGAGGCTGACTTACGACTTATGCTTTGTTTTCGCACGTTGCACTAAACCCGTATCGTTGGTGACACCTGTGTACTATGCGGATCTTTTGGCGTACAGAGGTCGGATGTTTCAAGAGGAGGTAAAGCAAATGGAAGACTCTGGTTCTGCTCCACCTTCAAGTTCGTTTGATCGGGCCTTCTACAATCTTGATCAAAACCTCAAGGATTCTATGTTCTTCATCTAAATCCACAGCCTTGAGATGGGTCGAAGTGCCTATACGCATATTAAACATCCTTTCTAAAATGGATTAGCAAAGGGGTTTGTGCGTGAATCTAATGCATTTCGTTCTTTTTCAGTGTGTTTTCTTTGTTTGTGTGTCGAATAAAACCTTGGATAAAATCTACCGGTGTCGTCGCCTGTAGTCAAGGTCGGTTTGGTTTGGTTTGTGTTTTACCTTTGATTTCCTTGGAGATTGAAGGGTACTTTATGTTTTCAGATGTGTGAAACGGTTGATGTTGGCTACTATTTTGTATTGCATTGCC | |||||||||
gi|125443772|gb|EL455468.1|EL455468 CHTM8112.b1_O11.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM8112, m TTAGATTCACGCACAAACTCG EST sequence (targeted fragment marked with yellow): TTGGTGGCAACTGAAAGAGTTTGTGTTAGAGGAGCTTAATGTTAAATCTGTTGTGCCCTGCAATGATCCTTTGAAGTATGCTTCTTTACGTGCCGAACCTGATTTTAGCGTGTTGGGTAGAAGACTGGGAAAGTCGATGAAAGTAGTTGCAGATGCAGTGAAGGCAATGTCACAGGAAGACATTTTATCTTTTGAAAAAATAGGAGAAATTACTATTGCTAATCACGTCTTAAAGCTCTCTGATATCAAGATTGTGCGTGGATTTAAACGCCCTGATGGCGTGACAGAAGAGCAAATGGATGCAGCTAGTGATGGTGATGTTTTGGTTATCATTGATTTGCAACGTGATGATTCATTGTTGGAAGCTGGATTTGCACGTGAGGTCGTTAACCGAATTCAAAAGCTAAGGAAAAAATCCGCACTTGAACCCACCGATGCAGTGGAGGTCTACTTCAAATCGTTGGATGAAGATGCATCAGTTTCCGCAGAAATGTTAAAATCCCAGGAAGCATACATCAAAGAGGCACTTGGCTCATCTTTACTCCAGTTTAGCATGATTCCAAAACATGCTGTAATCATTGCTGAGGAGACCTACAAGAACATCTCAAATTCTGACTTTCAGATCACTTTGTCAAGAGCAGCATTATTTAATGAGAACGCAATTGTCGACTTATACGCAGGGAATACAAAGTATGCACAGGCATTGCAGGTATATCTGTTGTCAAGAGACCACAGCAATCTAAAGTCGGAATTTCAGCACGGAAATGGAAAGATTACGGTGAGCTGCATTGAAAACCAGCCTGCCGTTGATGTGGTCTGGGGAAAA | |||||||||
gi|125453039|gb|EL464734.1|EL464734 CHTS3682.b1_C10.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTS3682, m TTAGATTCACGCACAAACTCG EST sequence (targeted fragment marked with yellow): GCGGGGGAGCGCATAGAAAGCCAACAAACCGGCCGGCTTCTTCTTCTTCTTCTTCTTCTTCAGATCTAACCTCTTCTCTTCGGAACAGCCATATTTCGTGTTTGTGCGTGAATCTAAGGATCCTTAATCTTATCACATCACCAGTAAGTAATCATACTTTTTCTTTGTCTGTTTGTTGCCAGACAGGATCTGTTGGTTCGTTAGATTCACGCACAAACTCGTAATATGTCTCTTCATTTGCAACCAATCAAGATTCTTCATGAACACATCGCCGCCGCCGGAATCTTTGAATCTGATTCTGAAATGAAGAAATGGGTCTGTATTATCAGTTATGATATGCTGCTGGTTTATTCAGGACCATATGGTCGTTCGATCACAATCTTCTCTCAGCTACCTCCTAAGACCATGCGTAGTGGAAGAAACCCCACCCTTGGGCGTTTTGCGCCATGTGGCGGTCCAGTCAGCAAGGGGGCTTTATGGGACGTTTTTCTAAAATGGATGTAGTGGGGATGTGGGCATTATGTTAAAAGGGAGAATGCATGTGATTGGGCAAGAAAACAAGAATGCATGTGATTGGCCAAAGAATTGGAAGTTGGGCGTTGAATTAAGAACGCTGCAGCCCAAAATCACCAAAACAATGCCCATGGGGGCGGAAGCAAGGGCGTTTGGGGGCGTTTATTTGTAAAAAAACGCCCAAGAATGGCACCACTACGGGTGGTCTAATCAGGTTTCTTATGATGTAAAATTGTAAAAAGCATTGAATTTCTTGAATATTGGATTCTCATGTCATTTTGTTAGAAA | |||||||||
gi|125458334|gb|EL470027.1|EL470027 CHTS8649.b2_A04.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTS8649, m TTAGATTCACGCACAAACTCG EST sequence (targeted fragment marked with yellow): GGGGGCCGATGTGATCACCCGCTAATCGAACACTGAGTCCCCATCTGTTGCAGCCATTGTTGGCTCTGTGGACCCTGCTGCAACGCGTTATGTCCCTCGTGTGTTCCCGCAAGAGCGCCACAAAGAGGAGATTGTTAATTTCGGGAGCGTGTGTTTGGACCTGGTCAACACATACGCTAAATTCAATGGAGTGAAACCGAACAAAATTGTGGTGTTCCGTGATGGTGTTAGTGATGACCAATTCGAGATGGTTCTGAATAAAGAAATGGTTGATATGAAGAAAGCCATTTACACTGAACACTACCGTCCGTTTGTCACATTTGTCGTGGCGCAAAAACGTCACACGACTCGTTTGTTTCTTAACAACGAGAACGACATCGGGAACGTGCCTCCGGGAACAGTTGTCGACACAAACATCGTCCATATGTCTAATTTCGATTTCTACCTTTGTAGCCATTTCGGAGGCATGGGAACGAGTAAGGCCACACACTACTCGGTGATTTGGGATGAGATTGGGTTTTCAGCTAATGAGATTCAGAGGTTGACCTACGACTTGTGCTTCGTTTTTGCACGTTGCACAAAACCAGTATCGTTGGTGACACCTGTGTACTATGCGGATCTTTTGGCGTACAGAGGTCGGATGTTTCAAGAGGAGGTGATGCAAATGGAAGCCTCGGGTTCTGCTCCACCTTCAAGTTCGTTTGATCAGGCCTTCTACAATCTTGATCAACACCTCAAGGACTCCATGTTCTTCATTTAAATCCACTGCCTTGAGATGGGTCGAAGACTCGAAGTGCCTATATGCATATCAACATCCTTTCTAAACTGGATTAGCGAAGGGGTTTGTGCGTGAATCTAATGCATTTCGTTCTTTTTCAGTGTTCTTTTTAG | |||||||||
gi|125438393|gb|EL450090.1|EL450090 CHTM3094.b1_K05.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM3094, m TTAGATTCACGCACAAACTCG EST sequence (targeted fragment marked with yellow): CGCGGGGGAGCGCATAGAAAGCCAACCAAACCAAACCAAACCGGCCGGCTTCTTCTTCATTCTTCAGATCTAACTTCTTCCCTTCCGAACAGCCATATTTCGTGTTTGTGCGTGAATCTAACGATCCTTAATCTTATCACATCACCAGTAATCATACTTTTTGTTTGTCTGTTTGTTGCCAGACAGGATCTGTTGGTTCGTTAGATTCACGCACAAACTCGTAATATGTCTCTTCATTTGCAACCAATCAAGATTCTTCATGAATTCATCGCCGCCGCCGGAATCTTTGAATCTGGTATGTTTTAACCCTTATCAAGAATCTTTGTTTCTATCTACATATATGCTGCATATACCAGATTTGTTTGTTTTTTTAATCAGATTTTAGATTTTGATTTTGTGTGTACAGGTTTTGGAAATGAAGATATTTTTTTTGAAATTGGGATTATTTTAGGCGTGTTTTGAGTTCATAGTTGAATTAGGGTTTTGTGTTTTGATATTTGAAAATTGGATGTTTAAATAGATGTGGATGAATAGATTCAATAAGTTGGTATTTACTAAATTAACATATATTTTGCAGAAATTAAAATTGATTGCTTGTAAGTTAAGCAACTTTAACGGAGATTGTTAATATTGATTACATGACCAATACTCACAGTCCCATGAGCCAGTTGTTAATACTTGGTATGCACTAAATTAACATATAGCGCTGAATTCGTCGCTGATGACGAGCCTACTTATCGTTTATAATATGTTACATGGCTCCCTCATTGAGATGAGGCTATGTTGTTACCTATGCAGATTTCTGAAATGAGAAATGGGTCTGTATTATCAGTTATGATATGCTGCTGGTTTATTCAGGACCA | |||||||||