| mature miRNA: TTCATGTGTGCCAAGAATTAC species: Helianthus tuberosus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|125483837|gb|EL512620.1|EL512620 CHTY391.b1_M01.ab1 CHT(XYZ) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTY391, mRN TTCATGTGTGCCAAGAATTAC EST sequence (targeted fragment marked with yellow): GATGGCGAGAGGCCAGGTCTCTACCCCGATATCGGCAAGAGCGCCAGACGATCTTCTGTACAAGGATTACCAGAGCGACCATAACTTTGCTCTCACTAGCGAGGCAGACAATGGAGACGCCGTTACCTCATCGGGCGCTAGGAAAGGCGAGTTGTTTTTGGCACATGTGAGCACTAAACTGGGCAACAAAAACATCACGACTGATGTCAAAGTTGACACGGACTCCGAATTATTCACAACTATCACATTTGAGGAACCCGCGCCTGGAGTGAAATCCATCTTCAGCTTTGTTGATCCAGATCAGAGATTTGGGCGGGTTGAACTTCAATACTTGCAGAAATATGCATGAATCACTACCAGCATCGGTTTGACCGCTAGCCCTGGTGGTCAATTTCTCCGGCGCAGCCGGAAACGACCCATTGGCACTCCGGGCCGACGTTTCATTTGATGCGGCGACTGGCAATTTCACTAAGCATAAAGGAGCCCTAAGTTTCGCCAAATCTGACCTCATTGCTCTCTTGATTCTGAGCGAAAAGCTCACGCCCTAACTGCTTCCTACTACCAGCCGGATCGCCCATTGACCCAACCCAGAAGGCG | |||||||||
gi|125425076|gb|EL437048.1|EL437048 CHTM12043.b1_F11.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM12043, TTCATGTGTGCCAAGAATTAC EST sequence (targeted fragment marked with yellow): CAACGGCAGAAGGAGACCTGGTGATGGTTCCCGCGGAGTGATCCCCCCCCTCTCTCTCTAAATCTCTCTCACACACACGTAGTTTCTGCCATGGCTATCGCAGCAGCAGCTGTTATCGTCCCTATTGGCGTCCTCTTCTTCGTCTCCGGCCTCATCGTCAATCTCATTCAGGCGATTATATTTGTGACTGTATACCCGTTCTCGAAGAGTTTGTTTAGGCGGATTAACAGACAGGTAGCTGAGCTGTTATGACTGGAGCTTGTGTGGATTGTTGATTGGTGGGCTGGAGTTAAGGGAGTTCAGGACCTTGAACGAGTATCTAACTAATGAAAGCAAGCTATTTGGGTGGTCATTTACCTGTTGAGACGCGTGGCTTCCACAATTTTGGCCCCTTTTAAAACCTTCAGATGAGAGAGAACGAGAAGAGAGATTGGGAAAAGGGAGAGGAGAGGGTGCGGTGGTAGCCGGCGGGTCACCACTGTGACACACTGACACCGACACCACCACTGTCGCAATGGTGTTTCTGTTTAAGGGGGTTTTTTGCCCAATAAAAGAGAGAATGGGAATAGAGCAAAAGAGAAAATGGAGAGGAGAAGAGGGTGCGGATGTGGCCGGAGGATCACACACAAGTAGTAGCCGTTGAGTGTCCTTTGGTGGTTTTTATAAAGTCTAAAAGTGGTGGTCTGCATGGTCTGTAGCTTTAATCAAGGTTGCAGGATTTGATGGGTGAAGAACAGGATGATTCTTGGCACGCATGGCAATATGATTGTTGAAAAACTAGCTACACATAACATGG | |||||||||
gi|125449790|gb|EL461486.1|EL461486 CHTS1607.b2_M17.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTS1607, m TTCATGTGTGCCAAGAATTAC EST sequence (targeted fragment marked with yellow): GCTTGGCGGGGGGATGAGCAAAGAGAAATGGAGAGGAGAGAGGATGCGGCTGTGGCCGGGGGATCACACACAAGTAGTAGCAGTTGAGTGTCCTTTGGTGGTTTTTATAAAGTCTAAAAGTGGTGGTCGGCATGGTCTATAGCTTTAATCAAGGTTGGAGGATTTGATGGGTCAAGAACAGGATGATTCTTGGCACATATGGCAATATGATTGTTGAACATCAAACGGAGAAAATGATTTTTTTTTATAAAGTTTAACCTTATTGGCTTATCCAAATGGAAATCCAAAAGGAGGCTATCAAACTACTCACGTCTCTTTTCTTAAAAAAGTCTTTTTTTTCCCGACAACATCGGCATAGATCTCGTAGTTTGTAGTACTATGATCGAATCTTTCCAACTTCTAAAAATACTTGAGTTTAAGAACACGTCGATTTTGTAAATCAGATTTCCCCTCTCCATTGTTTCGTGCATCTCGAGGTATTCGGCTGCACAACGAGCGTTGACGACATTGTACGCGTTTAAGGTTATGGTCATACCATAACAGAATTTGGCACATAACTCGAAAGAAGCGAGACCACCTGGAATGTCGGGATTGACTAATAAAATTTTGGAGTGGGTCAAAACAGTAGATTAATTCTGTTAGCGGTAGTAGATGGCGTTTATTTTTGCTCACGAACGGATTTTATCAACATCATTTGAAGAATGATATCGAAGAGGAAAAACCAATGGTTGCATTGATGATTCATCTTCATGCAGTTCCTTTCCGTGAAGTTTCTGCCATCGTTGCAGTTGGATTAAGCTTCTGCTGTTCTGCAGGTCGTCGACTTTTCAGATGAAGAGTACACAACTGCGTGTAAT | |||||||||
gi|125443771|gb|EL455467.1|EL455467 CHTM8111.b1_M11.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM8111, m TTCATGTGTGCCAAGAATTAC EST sequence (targeted fragment marked with yellow): AGGGGATGTGAGATTCGGGAGATGACGGTGAGGTCTGAGACAAGGGAGACGACGGTGTCGCTGGAAAGCGATGATGATGACAGAGATGGTTGACTCGGCTGCGATAAGTGTTTATCAGTGCTTAGCGGCAGTGGTGGTTGCTATTGGTGGTCATATTCATCTTCCGGTGGCCAGGGTTCCACCACGAAACAATGGTGTACGCGGCGTGTTCTTTGTCAAAACCGACACTTTTTAAACCCTTTTCAATTCAATCCCTCATGAGAAGAGAGATTGGGAAAAGGGAGAGCAGAGGGTGCGGTGGTAGCCGGAGGGTCACCACTGTGATACACTGACACCGACACCACCACTGTCGCGGTGGTGTTTCTGTTTTTGGGGGTTTTTTGCCCAATAAAAGAGAGAACGGGAATAGAGCAAAAGAGAAAATGGAGAGGAGAAGAGGATGCGGCTGTGGCCGGGGGATCACACACAAGTAGTAGCAGTTGAGTGTCCTTTGGTGGTTTTTATAAAGTCTAAAAGTGGTGGTCGGCATGGTCTATAGCTTTAATCAAGGTTGCAGGATTTGATGGGTCAAGAACAGGATGATTCTTGGCACATATGGCAATATGATTGTTGAACATCAAACGGAGAAAATGATTTTTTTTTTATAAAGTTTAACCTTATCGGCTTATCCAAATGGAAATCCAAAAGGAGGCTATCAAACTACTCACGTCTCTTTTCTTAAAAAGGTCTTTTTTTTTCGACAACATCGGCATAGATCTCGTAGTTTGTAGTACTATGATCGAATCTTTCCAACTTCTAAAAATACTTGAGTTTAAGAACACGTC | |||||||||
gi|125443321|gb|EL455017.1|EL455017 CHTM766.b1_L24.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM766, mRN TTCATGTGTGCCAAGAATTAC EST sequence (targeted fragment marked with yellow): CAACGGCAGAAGGAGACCTGGTGATGGTTCCCCTCTCTCACACACACGTAGTTTCTGCCATGGCTATCGCAGCAGCAGCTGTTATCGTCCCTATTGGCGTCCTCTTCTTCGTCTCCGGCCTCAACGTCAATCTCATTCAGGCGATTATATTTGTGACTGTACACCCGTTCTCGAAGAGTTTGTTTAGGCGGATTAACAGACAGGTAGCTGAGCTGTTATGGCTGGAGCTTGTGTGGATTGTTGATTGGTGGGCTGGAGTTAAGAAAATAGCAAGCCCTTTGACTATAAGGTACCTTAAACATAGTTGAATAACTTATCTGGTATGATTTGTAAAGAGCAGTTGGTCATACAGGAAATACTCGGCGACTAGGGTTCCGTCATCTTCCAAATGTGGGGACTCAGAACAAAAGGAGTGAATAATGAAGATTGGGCTAAAGAGTGTCCTAGCATGAATAATGTTTCTATTGCTTATGGTGGTTAAAGAGTACCAGGAAGACATGGGAGTGCATCTGGTCAGCATGTTGGTGGTTGTTGACTTTTAGAGGCTAAAATTCACACGGACACCTCGACACCACCACTGTGACACACTGACACCGACACCACCACTGTCGCAGTGGTGTTTCTGTTTAAGGGGGTTTTTTGCCCAATAAAAGAGAGAATGGGAATAGAGCAAAAGAGAAAATGGAGAGGAGAAGAGGGTGCGGCTGTGGCCGGAGGATCACACACAAGTAGTAGCCGTTGAGTGTCCTTTGGTGGTTTTTATAAAGTCTAAAAGTGGTGGTCTGCATGGTCTGTAGCTTTAATCAAGGTTGCAGGATTTGATGGGTCAAGAACAGGATGATTCTTGGCACGCATGGCAATATGATTGTTGAAAAACTAGCTACACATAACATGGATGAC | |||||||||