miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTGAGCCGTGCCAATATCA
species: Helianthus tuberosus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|125458401|gb|EL470094.1|EL470094 CHTS8717.b2_I20.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTS8717, m 

TTGAGCCGTGCCAATATCA
 ||||||| |||||||||
CACTCGGCCCGGTTATAGG

EST sequence (targeted fragment marked with yellow):
GCGGGGCGACGAAAAAGAAGAATACTTAGAGCAAGTTCTATCAAGAAATATGGCAAGAAAAGTAGTCTCCACACTGTTGCACAACCAAATTCTGTTGATCTTGATCTTATTAATCAAAGTGGCCATCAGCATGCAATTGCATATGTGGAAGGAGAGTTTTATGGAGCAAAAGCAACTATGAATGTTTGGGACCCTCAGATTCAACAGTCTAATGAATTCAGTTTATCTCAAATTTGGTTATTAGGAGGCTCATTCGCTTCGGATCTCAATAGCATTGAAGCGGGTTGGCAGGTCAGCCCAGATCTTTATGGAGATAATAACACCAGATTCTTTACATATTGGACTAGTGATGCATATCAGGCCACAGGCTGTTACAACCTTCTGTGTTCAGGATTTGTTCAAATCAACAATGAGATAGCATTGGGGGCCAGCATTTCTCCTATTTCTAAATATCATGGTTCCCAATATGATATCAGTGTACTTATCTGGAAGGACCCCGAGCAAGGAAACTGGTGGATGCAATTTGGTAAAGGAAATGTGCTCGGATATTGGCCCGGCTCACTCTTTTCTTACTTAAGCGAAAGTGCATCAATGATCCAATGGGGCGGTGAGGTGGTGAACTCCGCCTCTGACGGGCAGCACACCACCACCCAAATGGGAAGCGGTCATTTCCCCGAAGAAGGCTTTGGTAAGTCTAGTTACTTCAGAAATGTTCAAATAGTAGACGGATCAAACAGTCTTAGAGCCCCAAAAGATATAGACACGTTCACTGAGCAACCCAATTGCTACGATGTTCNAACCGGCAAGAATGATGGTTGGGGCAGCTACATTTACTATGGTGGACCGGGCAGAAACGCGAACTGCCCGTGAAATTGATAGTTATGGAAGTTCATTAAATTAATGAACTGGTGTATTTGGAATATGTATTATGTAGATTCTAAATCAGTTTACTTCATACGAGTA


gi|125452249|gb|EL463944.1|EL463944 CHTS2114.b2_C02.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTS2114, m 

TTGAGCCGTGCCAATATCA
|||| |||||||||  .||
AACTGGGCACGGTTTGGGT

EST sequence (targeted fragment marked with yellow):
CGGGGTGCAGTGTCCTCAACCCCCCTCTACAGCACATTGCCAACTTGGCTGGTAACAAAAACTTAGTTTTGCCCGTACCTGCATTCAACGTCATCAATGGTGGATCACATGCAGGAAACAAACTTGCCATGCAGGAATTTATGATTCTCCCCGTTGGTGCCTCCAGCTTCAAGGAAGCCATGAAGATGGGTGTTGAAGTATATCACAACTTGAAGTCTGTGATTAAGAAGAAATACGGTCAGGATGCAACAAATGTTGGTGATGAAGGTGGCTTTGCTCCCAATATCCAGGAAAACAAGGAGGGTCTTGAGTTGCTTAAGACAGCTATTGCTAAAGCTGGATACACAGACAAGGTTGTCATTGGAATGGATGTTGCTGCATCTGAATTTTATGCGGAGAAAGACAAGACCTATGATCTGAACTTCAAGGAAGAGAACAACGATGGCAAACAAAAGATTTCAGGAGAACAACTTAAAGATCTTTACAAGTCATTTGTGAGTGAGTACCCTATTGTGTCGATTGAGGACCCATTTGACCAAGATGACTGGGAGCACTACGGCAAGATGACCGCTGAATGTGGCGAACAAGTACAAATTGTGGGAGATGATCTTTTGGTCACCAACCCCACGAGAGTCAAGAAGGCAATTGATGAGAAGACTTGCAATGCTCTTCTTCTAAAGGTCAACCAAATTGGGTCCGTCACCGAGAGTATCGAAGCTGTGAGGATGTCCAAACGTGCTGGTTGGGGTGTGATGGCCAGTCACCGCAGTGGAGAAACAGAGGACACCTTCATTGCTGATCTTTCTGTGGGTTTGGCACGGGTCAAATCAAAACTGGAGCTCCATGCNAGTCTGAGCGTCTTGCAAAGTATAACCAGCTCTTGAGAATTGAAGAAGAGCTTGGATCAGAAACGGTTTACGCTGGAGCAAA


gi|125438360|gb|EL450057.1|EL450057 CHTM3061.b1_J22.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM3061, m 

TTGAGCCGTGCCAATATCA
||||||||.|||||||||
AACTCGGCGCGGTTATAGG

EST sequence (targeted fragment marked with yellow):
GGCGGGGGCGGCGGCGTGGTGGCTGCACCACCACTACTACACCAATGCTAGGTGTCTCCGGCAACCCATCCCACCAAAAGTGGCCGGAGTTGCAACCCATCCCACCTGAACTTGAACTTTTACAACAAAGATTTGGTGTTGGGTTGGAAGACTTTGAAAGTTTGTTATCTGAATCTGCACAAGACCAGTCTCTCCGGTGGATCTCCGGTGACTTTGATGACTCATCTTTGAGCTTACAACAGCTGTTGCAGTGTAACCAAATTGACCAAAATGCCCCTCCAGCCACCCTGTCTGAAAATTCACCAAATCCCAATTTGTTGCCACCATTGCCACCTCAAGTGCAGTCCTACCACCACAATCTTCAGAAATCCCCTGTTTCTGATCTGGGTCATCGAAAAGATTCAATTTTGAACCAGGGTTTTGAAAAAGTTCCGATTTTGAATCCGGGTTTTCAAAAAGATTCGATTTTGAATCCGGGTTTTCAAAAAGACTTTATTTTGAATCCGGGTTTGCAAAAAGTTTCTATTTTGAATCAGGGTCAAGAGTTACTGCTCAAGAAATCGTCTCCGGTGGTGGTGGTAAAACAAGAACCACCACAAAGTTCGGTACTGCCATCCCACCACCACCACCACCAGTACCAGGTTATCTGTGACCAGTTATTCGCTGCGGCTGAGCTAATGCTCTCTGGGAACCTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGTTCGCTTCGGGTCCGACTCCAAGTAAGCCTTTTCAAAGGGCGGCTTTTTATTTCAAAGAAGCCATGCAAATGCAATTACAGTCGAATCTGAATCCGAACAGAATTACTCCACATTTTAATGGCATGTTCAAGATGGGAGCTTANTAAATGTTTTCTGAAGTTTCTCCCGTTATTCAGTTTATGAATTTCACCTCGAACCAGACACTTCTTGAAGCTATTGCAGATGCTAAAAACATTC


gi|125444807|gb|EL456503.1|EL456503 CHTM9565.b1_J16.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM9565, m 

TTGAGCCGTGCCAATATCA
||||||||.|||||||||
AACTCGGCGCGGTTATAGG

EST sequence (targeted fragment marked with yellow):
AGTTCTACCACCACAATCTTCAGAAATCCCCTGTTTCTGATCTGGGTCATCGAAAAGATTCGATTTTGAACCCGGGTTTTGAAAAAGTTCCGATTTTGAATCCGGGCTTTCAAAAAGATTCGATTTTGAATCTGGGCTTTCAAAAAGACTTGATTTTGAATCCGGGTTTGCAAAAAGTTTCGATTTTGAATCAGGGTCAAGAGTTACTGCTCAAGAAACCGTCTCCGGTGGCGGTGGTAAAACAAGAACCACCACAAAGTTCGGTACCGCCATCCCACCACCACCACCACCAGTACCAGGTTATCTGTGACCAGTTATTCGCTGCGGCTGAGCTAATGCTCTCTGGGAACCGCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGTTCGCTTCGGGTCCGACTCCAAGTAAGCCTTTTCAAAGGGCGGCTTTTTATTTCAAAGAAGCCATGCAAATGCAATTACAGTCGAATCTGAATCCGAACAGAATTACTCCACATTTTAATGGCATGTTCAAGATGGGAGCTTATAAAATGTTTTCTGAAGTTTCTCCGGTTATTCAGTTTATGAATTTCACTTCGAACCAGACACTTCTTGAGGCTCTTGGAGATACGAAAAACATCCACATCATCGATTTTGATATCGGGTTTGGTGCGCAGTGGGCAGCCTTCATTTAAGAACTTCCGATTACAAACAATGGCAGTGACAGTGGAGGATGTTCGCTAAAGATTACCGCGTTTGCGTCACCTTCAACACACCATCCCCTTGAACTTGGACTTATGCACGAAAACTTGTCACAACTCGCTCAAGAAATTGGGATTTCTTTCGAGCTTGAAGTTGTGAACTTTGATTCTTTCGATCCGCGATGGTTTTCAGTTTCTGAAAACGAGACAATTGCTGTGAATTTCCAATTTTGGTCGGCTTGCACTCGCTTATCTGCAATTC


gi|125431128|gb|EL443100.1|EL443100 CHTM20078.b1_L03.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM20078, 

TTGAGCCGTGCCAATATCA
||||||||.|||||||||
AACTCGGCGCGGTTATAGG

EST sequence (targeted fragment marked with yellow):
CACCAAACCCACCATCAAAATCAAATCTTTTCACCGTTAAACGACACCCAAATGCTCCCTCTTGACATTAAACCAAATCTTTTCAACACCCACCTGCCATTCGAACAACAGTTCTTGATGCCAAGAAACAACAACAACCACCACCACCCAGTAAGCATAGAGTACAACCCTCCAATGCACAAGAACCCGCTGCTTGAATTGGGTTCCACTCAACTTCAAAAATCACCAAAGCAACAGCAGCAACAGGGGATCATTGACCAGCTTTTCAAAGCAGCAGATCTGATCCAAACAGCGAATAATCCGATACTCGCGCAAGGGATATTGGCGCGGCTCAATCATCAGCTTTCACCAGTCGGTAAGCCTTTCGAAAGGGCTGCTTTTTATTTCAAAGAAGCTCTTCAGTTACTCATACATTCAGTGCTAAACAACATCAACCCTCCTCAACTTCCTACCACCACTGCTTGTAATTCCCCTTTTAGTTTAATCTTTAAGATTGGTGCTTACAAATCATTCTCAGAAGTTTCCCCTTACATTCAGTTTGCTAACTTCACTTGCAACCAAGCGTTGCTCGAATCCCTCAACGGCTTCGATCAGATTCATATTATCGATTTCGATATCGGGTATGGCGGTCAATGGGCTTCTCTTATGCAAGAGCTTGCTTTAAGGAACAATGGTGTGTCTTACATTAAGATTACTGCTTTTGTGTCACCATCAACTCATGACCAGCTGGAACTCGGATTGACCCGAGAGAATTTGATCCATTTTGCAAGTGAAATCAA


gi|125460464|gb|EL472157.1|EL472157 CHTS18484.b1_G13.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTS18484, 

TTGAGCCGTGCCAATATCA
|||||||.|||||| ||
AACTCGGTACGGTTCTAAC

EST sequence (targeted fragment marked with yellow):
GAGAGAGAAGAGATGAGAAATCTCCGGCGGTCGGAGACTCAGACCGGCGGTCTTTCTCAGGATCCGGTGGTCTTAGTCTTTATCTGATGGATTTCTGACAGTTGAAGATGATGATGAACGGCGTACGTCGGAGACGCCGTTTTCCGGCAACAGTTCGCCGGCGACGGCATGAATGGCGGGGTTAGTGATTTTGTTATTAATGATGATGATTATAACTAACGGAAGTGGTGGTAACTCGGCGGAGTTTACGGCAACAATGACTGTGAATGTTTTGATTCGAGTTCGAGTTCGGTTCAATGTTTGGTCTCGGCTCAATCTTGGCATGGCTCAACAGGCTCGGGTGTGTAACTTCAGGTGGTTCATTTTCGGGTTTTGATTCGAGTCAACACGGTTAAACCGAGTTAACAATGTTCGGGTCCGGGTCAATCAGTCAAAGACAGTCAACGGGACTCGGTCTGGGTCAACAGTGGTCAACAGATCAGTTCGGGTGACATCTCGGGTTCCGGGTCAGATCTAGTATGGTTCGGGTTCGGGCCGGCAGTTTTGGCGGGTCCGGTTCGGTCAGATCGGTCAGCTTCAGAAGCAGTTCGGGTCGACTCTGTTAACTCAGCGAGTCAACTCGGTCAACTCAGCGAGTCAAACCTGGTCAACTCAGTCAAACGGTTCGATGTTTCGACACGCGAAGACTCGGTAAAGAATTTAGGACGCGAACATAAATTTCATTAATTATTCCCTTATTTTATACGTGATAGCGAGCTCGAACTAATTCGTATTGATCATAGTTTACGTTTTTTGGAGATATTTAGCAAATTTGATAT


gi|125437904|gb|EL449601.1|EL449601 CHTM28198.b1_L17.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM28198, 

TTGAGCCGTGCCAATATCA
|.|||||.||| |||||||
AGCTCGGTACGATTATAGT

EST sequence (targeted fragment marked with yellow):
CTTTCGCAAACGGGGACGAAAAGTTTGCTTTAATATTCCATTCTTTTTTATAATAAATAGTTAGTTTCTTTCATTTTCTAAGATAAAAGATAACCCATTTGACCCATCCAAACTGTGTTTTGCAAGCTGCGTATTGCTTGTCACCTGTTTCTATCGCGTTGCTTGGTTTCTATCCCGTTGCTTGGTTTCAGGCGTTATGTTCTTTGCATATAGCACTAGAAAAGATGAAAACTCTACTTTAGTATTGTGTAGAATGTAAGAAACCTGGTAACCTTACTCTTTTAATGTTGTATGATAATTGACGCCTAAATGTACAATGTTGGGTTGGGTGTTTGTAGGGTATTCGCTTACTCTGATGTGACTCCTTTAATCTAGAAGATAGTCTTAGACGAGTTGAAGATATAGTCCCACAAACTATTAGTTCTCAGGTAGCAACAAAAACTTCAGTTATTGCACCTTTTGAAGGCAAAAATTGTTATGAAACTATTGATTTGGCTAGATGCTTGGGTTGGATAACGGGTCAAAACAGGTTCTGTTTCGAGACGGGCTGTATTGGGTTGGGATGATCCTCGAATCACCTTTGTGTTCATAAGGTTCTTCATAAAGTATCCAGCCTATTTAATAAGTAATAACACATCCTGTTTTTAATGTTTTTTGTTTGTTTCAAATATGTTTTTTGTTTGTTTCAAATAAGTTTTTTGTTTGTTTTAAACCTTTTGATATTAGCATGGCTCGACCCGTTCTAAGTCGGTCTAACATGGCCTCACTCATTTTTAGTCGGTCCAACCTGGCTCGACCTGTTTTTAGTCGGTCAAACCTGCCTGAC


gi|125447886|gb|EL459582.1|EL459582 CHTS12924.b1_G16.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTS12924, 

TTGAGCCGTGCCAATATCA
||.||||||||||| | ||
AATTCGGCACGGTTTTCGT

EST sequence (targeted fragment marked with yellow):
TATTTTGACCTCGATTACCCTGTACCCCCATCAACAACATCGATCCAAGTATCTAGTTTTATGACTAAACTTTATCTTCCATGGCTAAGGAATTCTTACAATGAGCAACAGCAGCTTGGATGGCAGCTTGAAACTCTTCCATGGTGCTCTCGCTGCCTGTGCTTTTGGCACGGCTTAAAGATCCTGAAGACCTCACCTATCCCACTGGTCGCCGAATAAGATCCTATGGACTCACCGAGATGAAAACTTCCCTCTTCTCACACAACCTCTACTCATCGCCACCAGCTGACGAGACCAATAGCTAAGAAACGTGCACTGAAAACAAACGTGACTACCCGGTATCTTCGACTATTATTCGCCCTCATCGCCCTCCACAATAACACGCAAGGCTTCACCACATTCCTAGACTTTTTAATTACTAGAACCCCTTCTATGCTGAGATTCATGCTACAGCTCTTGCTGACGTTCCTGTTCTAAGATGGTATAGCCGTAGGTATTGGCGCAGGGGCACTCGTACACAGTCCAGACCTAGCATGATTGAAGGAACCATCTTACAACATACTTATACCGCTGATTGAAGTCGAACTACACCTTACAGAGGACTCGATGTGGACCGTTCTTAGGGCGCCTGTTTACAACCTCACTCCAAACCTGAAATTTCATCCCGGACGTGTCGCAATGCTACTGAATGCGAGTGGACAACATTGTACTGCTCTCTTCACTACCTACAATGCTTGGGAGAATGCTCAATTTATGCTGGAGAAGTGCCTAGTTC