miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTGAGCCGTGCCAATATCACG
species: Helianthus tuberosus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|125438360|gb|EL450057.1|EL450057 CHTM3061.b1_J22.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM3061, m 

TTGAGCCGTGCCAATATCACG
||||||||.||||||||| |
AACTCGGCGCGGTTATAGGGA

EST sequence (targeted fragment marked with yellow):
GGCGGGGGCGGCGGCGTGGTGGCTGCACCACCACTACTACACCAATGCTAGGTGTCTCCGGCAACCCATCCCACCAAAAGTGGCCGGAGTTGCAACCCATCCCACCTGAACTTGAACTTTTACAACAAAGATTTGGTGTTGGGTTGGAAGACTTTGAAAGTTTGTTATCTGAATCTGCACAAGACCAGTCTCTCCGGTGGATCTCCGGTGACTTTGATGACTCATCTTTGAGCTTACAACAGCTGTTGCAGTGTAACCAAATTGACCAAAATGCCCCTCCAGCCACCCTGTCTGAAAATTCACCAAATCCCAATTTGTTGCCACCATTGCCACCTCAAGTGCAGTCCTACCACCACAATCTTCAGAAATCCCCTGTTTCTGATCTGGGTCATCGAAAAGATTCAATTTTGAACCAGGGTTTTGAAAAAGTTCCGATTTTGAATCCGGGTTTTCAAAAAGATTCGATTTTGAATCCGGGTTTTCAAAAAGACTTTATTTTGAATCCGGGTTTGCAAAAAGTTTCTATTTTGAATCAGGGTCAAGAGTTACTGCTCAAGAAATCGTCTCCGGTGGTGGTGGTAAAACAAGAACCACCACAAAGTTCGGTACTGCCATCCCACCACCACCACCACCAGTACCAGGTTATCTGTGACCAGTTATTCGCTGCGGCTGAGCTAATGCTCTCTGGGAACCTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGTTCGCTTCGGGTCCGACTCCAAGTAAGCCTTTTCAAAGGGCGGCTTTTTATTTCAAAGAAGCCATGCAAATGCAATTACAGTCGAATCTGAATCCGAACAGAATTACTCCACATTTTAATGGCATGTTCAAGATGGGAGCTTANTAAATGTTTTCTGAAGTTTCTCCCGTTATTCAGTTTATGAATTTCACCTCGAACCAGACACTTCTTGAAGCTATTGCAGATGCTAAAAACATTC


gi|125447886|gb|EL459582.1|EL459582 CHTS12924.b1_G16.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTS12924, 

TTGAGCCGTGCCAATATCACG
||.||||||||||| | |||.
AATTCGGCACGGTTTTCGTGT

EST sequence (targeted fragment marked with yellow):
TATTTTGACCTCGATTACCCTGTACCCCCATCAACAACATCGATCCAAGTATCTAGTTTTATGACTAAACTTTATCTTCCATGGCTAAGGAATTCTTACAATGAGCAACAGCAGCTTGGATGGCAGCTTGAAACTCTTCCATGGTGCTCTCGCTGCCTGTGCTTTTGGCACGGCTTAAAGATCCTGAAGACCTCACCTATCCCACTGGTCGCCGAATAAGATCCTATGGACTCACCGAGATGAAAACTTCCCTCTTCTCACACAACCTCTACTCATCGCCACCAGCTGACGAGACCAATAGCTAAGAAACGTGCACTGAAAACAAACGTGACTACCCGGTATCTTCGACTATTATTCGCCCTCATCGCCCTCCACAATAACACGCAAGGCTTCACCACATTCCTAGACTTTTTAATTACTAGAACCCCTTCTATGCTGAGATTCATGCTACAGCTCTTGCTGACGTTCCTGTTCTAAGATGGTATAGCCGTAGGTATTGGCGCAGGGGCACTCGTACACAGTCCAGACCTAGCATGATTGAAGGAACCATCTTACAACATACTTATACCGCTGATTGAAGTCGAACTACACCTTACAGAGGACTCGATGTGGACCGTTCTTAGGGCGCCTGTTTACAACCTCACTCCAAACCTGAAATTTCATCCCGGACGTGTCGCAATGCTACTGAATGCGAGTGGACAACATTGTACTGCTCTCTTCACTACCTACAATGCTTGGGAGAATGCTCAATTTATGCTGGAGAAGTGCCTAGTTC


gi|125431128|gb|EL443100.1|EL443100 CHTM20078.b1_L03.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM20078, 

TTGAGCCGTGCCAATATCACG
||||||||.||||||||| |
AACTCGGCGCGGTTATAGGGA

EST sequence (targeted fragment marked with yellow):
CACCAAACCCACCATCAAAATCAAATCTTTTCACCGTTAAACGACACCCAAATGCTCCCTCTTGACATTAAACCAAATCTTTTCAACACCCACCTGCCATTCGAACAACAGTTCTTGATGCCAAGAAACAACAACAACCACCACCACCCAGTAAGCATAGAGTACAACCCTCCAATGCACAAGAACCCGCTGCTTGAATTGGGTTCCACTCAACTTCAAAAATCACCAAAGCAACAGCAGCAACAGGGGATCATTGACCAGCTTTTCAAAGCAGCAGATCTGATCCAAACAGCGAATAATCCGATACTCGCGCAAGGGATATTGGCGCGGCTCAATCATCAGCTTTCACCAGTCGGTAAGCCTTTCGAAAGGGCTGCTTTTTATTTCAAAGAAGCTCTTCAGTTACTCATACATTCAGTGCTAAACAACATCAACCCTCCTCAACTTCCTACCACCACTGCTTGTAATTCCCCTTTTAGTTTAATCTTTAAGATTGGTGCTTACAAATCATTCTCAGAAGTTTCCCCTTACATTCAGTTTGCTAACTTCACTTGCAACCAAGCGTTGCTCGAATCCCTCAACGGCTTCGATCAGATTCATATTATCGATTTCGATATCGGGTATGGCGGTCAATGGGCTTCTCTTATGCAAGAGCTTGCTTTAAGGAACAATGGTGTGTCTTACATTAAGATTACTGCTTTTGTGTCACCATCAACTCATGACCAGCTGGAACTCGGATTGACCCGAGAGAATTTGATCCATTTTGCAAGTGAAATCAA


gi|125437904|gb|EL449601.1|EL449601 CHTM28198.b1_L17.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM28198, 

TTGAGCCGTGCCAATATCACG
|.|||||.||| ||||||| .
AGCTCGGTACGATTATAGTTT

EST sequence (targeted fragment marked with yellow):
CTTTCGCAAACGGGGACGAAAAGTTTGCTTTAATATTCCATTCTTTTTTATAATAAATAGTTAGTTTCTTTCATTTTCTAAGATAAAAGATAACCCATTTGACCCATCCAAACTGTGTTTTGCAAGCTGCGTATTGCTTGTCACCTGTTTCTATCGCGTTGCTTGGTTTCTATCCCGTTGCTTGGTTTCAGGCGTTATGTTCTTTGCATATAGCACTAGAAAAGATGAAAACTCTACTTTAGTATTGTGTAGAATGTAAGAAACCTGGTAACCTTACTCTTTTAATGTTGTATGATAATTGACGCCTAAATGTACAATGTTGGGTTGGGTGTTTGTAGGGTATTCGCTTACTCTGATGTGACTCCTTTAATCTAGAAGATAGTCTTAGACGAGTTGAAGATATAGTCCCACAAACTATTAGTTCTCAGGTAGCAACAAAAACTTCAGTTATTGCACCTTTTGAAGGCAAAAATTGTTATGAAACTATTGATTTGGCTAGATGCTTGGGTTGGATAACGGGTCAAAACAGGTTCTGTTTCGAGACGGGCTGTATTGGGTTGGGATGATCCTCGAATCACCTTTGTGTTCATAAGGTTCTTCATAAAGTATCCAGCCTATTTAATAAGTAATAACACATCCTGTTTTTAATGTTTTTTGTTTGTTTCAAATATGTTTTTTGTTTGTTTCAAATAAGTTTTTTGTTTGTTTTAAACCTTTTGATATTAGCATGGCTCGACCCGTTCTAAGTCGGTCTAACATGGCCTCACTCATTTTTAGTCGGTCCAACCTGGCTCGACCTGTTTTTAGTCGGTCAAACCTGCCTGAC


gi|125444807|gb|EL456503.1|EL456503 CHTM9565.b1_J16.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM9565, m 

TTGAGCCGTGCCAATATCACG
||||||||.||||||||| |
AACTCGGCGCGGTTATAGGGA

EST sequence (targeted fragment marked with yellow):
AGTTCTACCACCACAATCTTCAGAAATCCCCTGTTTCTGATCTGGGTCATCGAAAAGATTCGATTTTGAACCCGGGTTTTGAAAAAGTTCCGATTTTGAATCCGGGCTTTCAAAAAGATTCGATTTTGAATCTGGGCTTTCAAAAAGACTTGATTTTGAATCCGGGTTTGCAAAAAGTTTCGATTTTGAATCAGGGTCAAGAGTTACTGCTCAAGAAACCGTCTCCGGTGGCGGTGGTAAAACAAGAACCACCACAAAGTTCGGTACCGCCATCCCACCACCACCACCACCAGTACCAGGTTATCTGTGACCAGTTATTCGCTGCGGCTGAGCTAATGCTCTCTGGGAACCGCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGTTCGCTTCGGGTCCGACTCCAAGTAAGCCTTTTCAAAGGGCGGCTTTTTATTTCAAAGAAGCCATGCAAATGCAATTACAGTCGAATCTGAATCCGAACAGAATTACTCCACATTTTAATGGCATGTTCAAGATGGGAGCTTATAAAATGTTTTCTGAAGTTTCTCCGGTTATTCAGTTTATGAATTTCACTTCGAACCAGACACTTCTTGAGGCTCTTGGAGATACGAAAAACATCCACATCATCGATTTTGATATCGGGTTTGGTGCGCAGTGGGCAGCCTTCATTTAAGAACTTCCGATTACAAACAATGGCAGTGACAGTGGAGGATGTTCGCTAAAGATTACCGCGTTTGCGTCACCTTCAACACACCATCCCCTTGAACTTGGACTTATGCACGAAAACTTGTCACAACTCGCTCAAGAAATTGGGATTTCTTTCGAGCTTGAAGTTGTGAACTTTGATTCTTTCGATCCGCGATGGTTTTCAGTTTCTGAAAACGAGACAATTGCTGTGAATTTCCAATTTTGGTCGGCTTGCACTCGCTTATCTGCAATTC