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mature miRNA: TTGGATTGAAGGGAGCTCTA
species: Helianthus tuberosus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|125444931|gb|EL456627.1|EL456627 CHTM9693.b1_I23.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM9693, m 

TTGGATTGAAGGGAGCTCTA
|||||||| ||.||||. ||
AACCTAACCTCTCTCGGTAT

EST sequence (targeted fragment marked with yellow):
GGGATTCCAGTTGGGAAACTTGCTTTATATACTGCACTTGGAGGAGTTAGGCCTTCTGCGTGCTTGCCTGTTACCATTGATGTGGGGACGAACAATCAGAAGCTACTAGACGATGAGTTCTATATTGGTCTTAGACAAAAGAGGGCCACCGGAAAGGAATATTATGACTTGCTTGAAGAGTTCATGTCTGCAGTCAAGCAAAACTATGGTGAAAAAGTCCTCGTGCAGTTTGAAGACTTTGCTAACCACAACACATTTGAGCTGTTGGCCAAATACAGAACCAGTCATTTGGTTTTCAATGACGATATACAGGGAACTGCATCGGTGGTTCTTGCTGGTCTTGTTGCATCACTGAAATTACTTGGCGGTAGCTTGGCTGATCACACGTTCTTGTTCCTTGGTGCTGGGGAAGCAGGGACTGGTATAGCAGAGCTTATAGCTCTTGAAATATCAACAAAGACAAGTATTCCCGTTGAAAAGGCTCGTAAGAAGATATGGCTGGTGGACTCTAAGGGGTTGATTGTTAGCTCTCGTAAAGGTTCCCTTCAGCACTTTAAGCAACCGTGGGCTCATGAACATGAGCCTGTTTCAACTCTCTTAGATGCTGTCAAGGCCATCAAACCATCAGTCTTGATTGGAACATCTGGGGTAGGACAGACATTTACAAAGGAAGTGGTTGAGGCCATGGCAGCCTTCAACGAGAGACCACTTATTATGGCTCTCTCCAATCCAACCTCACAAGCCGAGTGCACTGCTGAACAAGCTTACACGTGGACTGAGGGCCGTGCGATATTTTCCAGTGGCAGTCCTTTTGATCCTTATGAATACAATG


gi|125425271|gb|EL437243.1|EL437243 CHTM12222.b1_L08.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM12222, 

TTGGATTGAAGGGAGCTCTA
|||| |||||||| ||.|.|
AACCAAACTTCCCCCGGGGT

EST sequence (targeted fragment marked with yellow):
CGGAGGGGTTCAGGGTTCCGGCGGCGGTACCGGTGAGAGGTTCTTTTAACCGTAAACGTTCAGAGACCAACGACACCAGCCATGGATTTCTATGTCTGTTTCATTCAACCAAAAAGGTCTATGAGGAAAACAAGAACCAAGTAGACAATATAAAATAAGAACCATGTGAGAATGTGGATTCAGAAGAGTTGATGATTCTTGATGAAAAAATTAAGCCCCATGAAGCACTGAATGCTTCAGTTAAAGTTTTAACAGATGGGGCCCCCTTCAAACCAAAGCTATTATGTCAACAATTGCCATCCTTTGTGGCAAGAGGTAGAGAAGGTGATGCTGCTGTTTGCTGTAACTTTTTCCAACTATTTGTATATGTGATAATAATGATCTTGGTTAGAGTTGATGTACGCAAAAACTAATTTACATCAATTCATGATATATGACACATGGTTGGAGTGAATCGGCCATACCCCTTTTTGTTGGAAATCAGGCCGATGCCATCTTTTCACTACAAATTTCTTTCTACATGATCTTGGTTTTCATGTTAGATATATGCATTGGTTTGAAACAAATTCGGAGATTTTCTAAAATTATCTCCTCCTAAAGCACATCCCAATGAAATTCAAGTTCAAAAGGAAAATTGTATCTTTCACCTTATATGGGTGACCAGCCCCAGTTTGAGACTCTACCACCTCAAAATGTATAATTTTTAAACAAAGTTTTTATCATTATAAGTTTGTATATATATATTTCTATCCTTTGGGTTGGTTAGTTTTTCAATATTTTGTTTAGGGCCAACTACAAGATCCTAGCCATTTGT


gi|125459269|gb|EL470962.1|EL470962 CHTS9601.b1_A01.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTS9601, m 

TTGGATTGAAGGGAGCTCTA
||||||| ||||| . ||||
AACCTAAGTTCCCCTTAGAT

EST sequence (targeted fragment marked with yellow):
GTGAACATAAGACATCCTTTGAGGTGACTATACTAAACCATCTTCAATAATCCAAAGAATTCATCAAATTTACATCTTTTTTTATATAGATTCCCCTTGAATCCAAGAAAACTTCACCTTTGATGAAAAAAGATGGATTTTGAAGATGAAGAGTGGGTGAATGTTCCTTATGATGGACTACTTGAAGTCCATGAAGATGGGGATGAGAAAATATTCTCAAGAAAATATGTCAAGAGTCCCACAAAATATTACAAACCGAATTACTTCTATACTCCAAAGACATATCAAGATTACGTCGAAGATGAACCAATAGTTCAAAAGCAATTGGATCACGAAGAAGAAGAAGTCAAAGAAATCATCAAACTCCCAATTTTGATCGAGGATAAGGAAACTTCATGTGAGTTTGAGCGTGGGCCAGGCTCAAATCAAGATCCGATCTTTCATGTTTTCTTAAAAAAAGAAAACCAATTTGTCGAAATGAAAATGGGTTCTCCGAGACTGAGTTCTCAAGAGTCTGATATGTCACGTGTTGAAATGGCTTCATTTCAACACGATGATAAACATGATGATCATGAGGTGAATTGTTCATCACCATCAAAGATGATCAAGAAAGAAGTTGTTTGGAAAGAAAGTAACCAAAGAGTGAATTTTTGGAAGTGGGGTTTAAGTGGGATTGGTGTTTTTTGTTGTGTTGGCTTGACAGCTGCCACCATTTGTATCATCATATGTGGAAATGGCAGAAGGCACAAACAACAAAACCAAAAGCTTAGGATTCAGATCTACCCAGAAAACAAGAGGATAAAGCAAGTGGTGCAAAAAGCAAATGAAGCAATGTCAGCAGTGAGAGGAGTTCCTTTGGTNCAGGCTCAAATCACGTATGGTGAACACTATGAAAGTATCTAGACCAATTGCCATCTCAGTTATGTAAATATTGCA


gi|125422116|gb|EL434088.1|EL434088 CHTL1137.b1_B22.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTL1137, m 

TTGGATTGAAGGGAGCTCTA
|||| |||||||| |||| |
AACCAAACTTCCCCCGAGTT

EST sequence (targeted fragment marked with yellow):
CAGTGTTTTGACACATAATTCGATTGTTTCGCCGACTAGTTCCTGTTCCAATTTGGCTAGTGTTCAAAAAGTTGCTAACTTTAGGCCTTCGATCCCTCCGCCACCGCCTTTGCCGCCTAATCACCATCCGTTGGTTGCGAAAACGGATGGTGGGAATGCTAGTTCTGCGTCTAAAGCGGCGAATTTGATCAGTGTTGGTGGTGGTGTTGGTAATTGGTCTAGGTTATGGAGTGATGGTGAGAAGCAGAGTCAAAGTTATGGGATGGACCACCCTAGATACGCTGCACCTGCACCGTTTTCAGGAAATCTTGGTGGTTTGCCTTACGAATCCAGCCCGCCGATTTGGCCTCCCACCCCTAATCTAATGCTGCAAAGATCACAGCACTTGCAGCAGTCATGTTCGTCATCGATGGTGAATGTTTCTGCAAACACTTCATTGTCGTCGTCTTCGTCGTCTGTAATGAATTTTCAGATTGAGCCCCCTTCAAACCAAAGCTATTGTGGCAACAACTACCAACAATTGTGGCCCGATGAAGAGAAGATGATTGGCATGAAAAGGCCATACCCCTTTTCATTAGAAGATATGCCAATTCCGTCTTTTCACTGCAAATTTCCGTCTGCATACGTGTCTCCCGTTTCAAGATCCGATGATTACGCTTCTTGTAGCAACGGTGGAGGCACTACTAGCATAGAACCCGCACATCCAGCTTCTTTCAGAGAAAATTGTTCAAGCTCGGGTGCCATATCGGATGTAGTAACGAAAAAGTTCATCGATGAAAACCAAATACTGACTCGAGATTTTCTCAAATTAGCCCCTCCTCAAACATCTCAATTGCGTTCAAGTTCGAAAGAGAATTTACGCCTTTCACCTTGTACAGGAGAACAGCCTCAGTTTGAGAGACTACCGCTTTCAAAGGACCAATCCAAGGATCCGAAACATATGTCTGG