| mature miRNA: TTTGGATTGAAGGGAGCTCT species: Helianthus tuberosus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|125422149|gb|EL434121.1|EL434121 CHTL1171.b2_E05.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTL1171, m TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CGCGGGATTTGCGGAGTGCTACTATGTAGCTCCCGAGGTTTTCATAGATCATATGGAACAGAAGCTGACATGTGGAGTATTGGTGTCATTGCTTATATTCTTTTATGTGGAAGTAGGCCCTTTTGGGCCCGCACAGAGTCCGGAATCTTCCGGGCCGTTTTGAAGGCGGACCCGAGTTTTGATGAAGCCCCGTGGCCTTCTTTGTCAACCGAAGCGGTCGACTTTGTCAAAAGGTTGTTAAACAAAGATTACCGAAAAAGACTTACCGCTTCACAAGCTCTAAGTCATCCATGGTTGGCCAATTATCATGATGTGAGAATACCGTTGGATATGATAATCTACAAGACTGTAAAATCATATATATGTTCATCTCCTCTACGAAAAGCTGCTTTAGGGGCTGTTGCAAAGACTTTGACAGTTACAGATCTCGGTTATATTCGTGACCAATTTGTGTCATTAGGGCCGAATAAAAGCGGATTTATATTCATGCAAAACTTCAAATCGGCTTTATTGAAGAATTGCACCGAGGCTGTAAAGGATTCGCGCGTGCTAGATTTTGTCCATATGGTGAGTTCTCTTCAATACAAAAAAATGGATTTTGAGGAATTTGGAGCAGCAGCCATTAGCATTCATCAGTTAGAAGCATTGGAAAACTGGGAGCAACTTGCACGTCGTGCTTATGAGCTCTTTGAGAAAGACGGAAATCGCCCTATCATGATCGAAGAACTTGCCTCGGAACTTGGGCTAAGCCCGTCGATACCAGTTCACGTGGTTCTTCAAGACTGGATTAGACATGCAGACAGTAAGCTCAGTTTCTTAGGATTCGTTCGGCTTCTGCATGGAGCCTCATCACGTGCATTCCAGAAAGCTTGAAATATATAAAAAAAAATCCAAAAAAAATAACTACGCCATCAGAAATGGGTTCGGTGATACAAATGTCTT | |||||||||
gi|125460475|gb|EL472168.1|EL472168 CHTS18495.b1_M15.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTS18495, TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CGGGTTACTCCCTCATCAACTGCTGCGAAGCTGGTCTAGTCAAAGTCAACGTCACCGGATGCATCAATGTAACCGATAACGTGGTTTGTGAAATGTCTAAAGTGCATGGCGGGACACTCGAGGCTCTAAATCTTAACGGTTGCAGGTCCGTTACTGACGCAAGCATGGTTGCAGTTGCATCCAACTGCTTATTGCTAAACGAACTCGATGTTTCCGAATGCGGAATCACCGATTTCGGTATTTCAGCATTGGCCCGCGCGGTACAGTTGAATCTTAACGTTCTTTCGGTATCGGGCTGTCGTCTCGTATCAGACAAGAGCTTACCGTTTCTGTTGAAAATCGGCGGGTCACTTATCGGTTTGAATATCCAGCATTGTCACGGGATCAGCAATTCGTCAGTCGGTCTTCTAGTTGACCGCCTCGGGAATTGCGATATTCTTTCCTAAAACAGATCTCGGGTCAAGTAGTTCAAGTGTCTGTATCGGGTATTATTGTTATGTTTGATTAGTAAGTCGGGTTTTTTTACAGGTCTTGTGACAGGTGTCTCTTCAATCCGAAAGTCGGTTCTAGTTTTTCCGGGGGATTTGGCTTATACCTCTATTTTTTGCAGTTAATCGGTAACCGATTTTAACTGCTACAAGATTTTTTTACCGTATTTCCTCGAGAATCATGAACTTACTTTTGGTTTTCGGATACACCTTTTGCAGTGGTCCTAGTTGTGTTTTAGCTTCTTATGAAGCTTTATTAGCGGGTACGTCTTGTCGTTTCACCTTTCGTGTCTAATATCATGTCATTATTGTCTTGTTTTCGGGTTGGTTGCGTAAAGTGTGATTCTT | |||||||||
gi|125450661|gb|EL462357.1|EL462357 CHTS16874.b1_D20.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTS16874, TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CTAGGCGGGGGGCCACACTGTGAATGTCAAAATAACCGGACTAACTCCAGGACCCCATGGGTTTCATCTACATGAGTTTGGTGACACCACAAATGGGTGCATATCAACAGGACCTCATTTCAATCCAAATGGGCATACTCATGGTGCTCCTGAAGATGGAATCCGCCATGCGGGTGACCTGGGAAACATAATTGCCAATGCCGATGGTGTGGCGGAGGCTACAATCGTTGATAACCAGATACCATTGACCGGGCCTAATGCCGTGGTTGGAAGAGCCTTTGTGGTTCATGAGCTTGCTGACGACCTTGGAAAGGGTGGTCACGAACTTAGCCTCTCCACTGGAAATGCAGGCGGACGACTGGCTTGTGGTGTGGTCGGGTTGACTCCAATATAATCTTGTGGTGAACCTTGTTCAGTCGGTCTCAGTTTTCGCATAGAGGTTAATGGTTTGCAATTAAAAACTGTAAGGTGAAATATTTGCACATTGTATTTAGCCAAATAATCATCGAGGCTTATGTGAAAACACTTGGTGAAAATGATGCAGAACCACTTCTTGCTGTTTTAATAACTTATGGTTTGATTATCATATTATTGGACCACTTTTACTTGGG | |||||||||
gi|125441897|gb|EL453593.1|EL453593 CHTM6327.b1_N21.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM6327, m TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): ACAGGAGGCGGTGAAGCTAAACCAACATTTGCTGATGCGTATTTGAATTTGGGGAATGTATACAAGGCTTTGGGAATGGCTGCTGAAGCTATCGTCTGTTATCAGCGAGCTCTTCAATCCAAACCAGATTATGCTATGGCTTATGGGAATCTAGCTAGCATATATTACGAGCAAGGTAACTTGGACGTAGCAATTAATCACTATAGACAGGCAATCAGTTATGATACTGGATTTTTGGAGGCTTACAACAATCTGGGTAATGCACTTAAGGATGCTGGCAAAGTTGAGGAAGCCATTCATTGCTATCGTCAATGCCTCTCTCTGCAACCTAGCCATCCTCAGGCACTCACTAACCTTGGGAATATATACATGGAATGGAACATGATGAGTGCGGCTGCTCAATGCTACAAGGCAACTTTGACTGTAACTACAGGGTTGTCGGCTCCCTTTAACAATCTTGCAATAATATACAAGCAGCAGGGTAATCATGCTGATGCCATATCTTGCTACAATGAAGTTCTTCGGATCGACCCTCTAGCAGCTGATGGTCTTGTTAACCGTGGAAACACTTACAAAGAGATTGGGAGAGTAAGTGAAGCAATTCAAGATTATTCACATGCTATTGCTATCCGTCCAAACATGGCAGAAGCTCATGCAAATCTGGCTTCAGCTTATAAAGACAGTGGGCATGTGGAAGCAGCTATTAAAAGCTACCGACAAGCATTGGCTATACGTCCCGATTTCCCTGAAGCCACTTGCAATCTTCTACACACGTTACAGTGTGTGTGTGACTGGGATGACAGAAAGAGAATGTTTATTGAAGTAGACGGTATTCTTCGAAGGCAAATCAAGACATCGGTTATTCCAAGTGTGCAACCTTTCCCATGCATT | |||||||||
gi|125429195|gb|EL441167.1|EL441167 CHTM17597.b1_J08.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM17597, TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): TTTGGAGAGCTCGGTTCAATTCGAGCTCTGATATCCAAAGCTCGAGCTCGGCTCGTGATCACAAATTTTTAAGCTCGAGTTCGGCTACTTATTCACATTATTCAAATTACTTTTTAACTATTTTTTGTTATGTATTTTTATGTAGCATAGTATATATATGACTTAGTTATTATTATCATAGTTTTACATAGAGTTAATTGTTATTTTAGTCCTTGAGGTTTGACCCAATTTGACACTTTAGTCCAAATAGTTTTTTCCTGCCATTTTAGTCCAAATAGTTTTTCTTTCTGTCGTTTTAGTCCCTGACTTTTGTCACTTTTTGCCATTTTCATCCACCACCACCTCCCACCACCCACCCCATCACAACCTTCTATCATTGCCACCACCTGTCTGCACCGTCGCCACCCTACCCACCCACATCAGCACCATCACCACCACCATTTTCACCACCACCAGCCACTTTTCCGCCACTCACGTCATCAACCAACACCACCGTCATCATCGTAAACCAACAACCACCGCCATCTTCTTCACTGTAAATCGGCACATCACCGTCCCCATACCATCGCACCTGCAAAAAAAAATGTAGTTAGACCAACATGTCCCTAACTAAACTGACATTTTTGGGGTTAGGGGGTTGGATGAAAATTGCAAAACATGACAAACGTTACGGACGGTGATCCGTCTTGAGTTTGATAAGTGAGGCTCAAACTATCTTGTTT | |||||||||
gi|125422116|gb|EL434088.1|EL434088 CHTL1137.b1_B22.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTL1137, m TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CAGTGTTTTGACACATAATTCGATTGTTTCGCCGACTAGTTCCTGTTCCAATTTGGCTAGTGTTCAAAAAGTTGCTAACTTTAGGCCTTCGATCCCTCCGCCACCGCCTTTGCCGCCTAATCACCATCCGTTGGTTGCGAAAACGGATGGTGGGAATGCTAGTTCTGCGTCTAAAGCGGCGAATTTGATCAGTGTTGGTGGTGGTGTTGGTAATTGGTCTAGGTTATGGAGTGATGGTGAGAAGCAGAGTCAAAGTTATGGGATGGACCACCCTAGATACGCTGCACCTGCACCGTTTTCAGGAAATCTTGGTGGTTTGCCTTACGAATCCAGCCCGCCGATTTGGCCTCCCACCCCTAATCTAATGCTGCAAAGATCACAGCACTTGCAGCAGTCATGTTCGTCATCGATGGTGAATGTTTCTGCAAACACTTCATTGTCGTCGTCTTCGTCGTCTGTAATGAATTTTCAGATTGAGCCCCCTTCAAACCAAAGCTATTGTGGCAACAACTACCAACAATTGTGGCCCGATGAAGAGAAGATGATTGGCATGAAAAGGCCATACCCCTTTTCATTAGAAGATATGCCAATTCCGTCTTTTCACTGCAAATTTCCGTCTGCATACGTGTCTCCCGTTTCAAGATCCGATGATTACGCTTCTTGTAGCAACGGTGGAGGCACTACTAGCATAGAACCCGCACATCCAGCTTCTTTCAGAGAAAATTGTTCAAGCTCGGGTGCCATATCGGATGTAGTAACGAAAAAGTTCATCGATGAAAACCAAATACTGACTCGAGATTTTCTCAAATTAGCCCCTCCTCAAACATCTCAATTGCGTTCAAGTTCGAAAGAGAATTTACGCCTTTCACCTTGTACAGGAGAACAGCCTCAGTTTGAGAGACTACCGCTTTCAAAGGACCAATCCAAGGATCCGAAACATATGTCTGG | |||||||||
gi|125425271|gb|EL437243.1|EL437243 CHTM12222.b1_L08.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM12222, TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CGGAGGGGTTCAGGGTTCCGGCGGCGGTACCGGTGAGAGGTTCTTTTAACCGTAAACGTTCAGAGACCAACGACACCAGCCATGGATTTCTATGTCTGTTTCATTCAACCAAAAAGGTCTATGAGGAAAACAAGAACCAAGTAGACAATATAAAATAAGAACCATGTGAGAATGTGGATTCAGAAGAGTTGATGATTCTTGATGAAAAAATTAAGCCCCATGAAGCACTGAATGCTTCAGTTAAAGTTTTAACAGATGGGGCCCCCTTCAAACCAAAGCTATTATGTCAACAATTGCCATCCTTTGTGGCAAGAGGTAGAGAAGGTGATGCTGCTGTTTGCTGTAACTTTTTCCAACTATTTGTATATGTGATAATAATGATCTTGGTTAGAGTTGATGTACGCAAAAACTAATTTACATCAATTCATGATATATGACACATGGTTGGAGTGAATCGGCCATACCCCTTTTTGTTGGAAATCAGGCCGATGCCATCTTTTCACTACAAATTTCTTTCTACATGATCTTGGTTTTCATGTTAGATATATGCATTGGTTTGAAACAAATTCGGAGATTTTCTAAAATTATCTCCTCCTAAAGCACATCCCAATGAAATTCAAGTTCAAAAGGAAAATTGTATCTTTCACCTTATATGGGTGACCAGCCCCAGTTTGAGACTCTACCACCTCAAAATGTATAATTTTTAAACAAAGTTTTTATCATTATAAGTTTGTATATATATATTTCTATCCTTTGGGTTGGTTAGTTTTTCAATATTTTGTTTAGGGCCAACTACAAGATCCTAGCCATTTGT | |||||||||