| mature miRNA: AAACATAGAGAAGTATGACTT species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|94343207|gb|BY860416.1|BY860416 BY860416 Etiolated seedling shoot Hordeum vulgare subsp. vulgare cDNA clone baet18f11 3', mRN AAACATAGAGAAGTATGACTT EST sequence (targeted fragment marked with yellow): CGACAGGGTGCGATACAAGACCACCGTCTTCCCCGAGTGTGACGACCTCGCCGACGGCGACTCCAGCTTCCACCTCTGGGGGGAGTCCAAGAAGAGGCGCCGCCGGTCGTCCTCGCCGCTGCAGTACTCTTCCAGCATGCAGTAGGTTATGGTTTCCGATCGAATGAGTCGAGTCGATCGATGCATGGCATGGTCAAGTAGTTTTGTCGACCGAGGTTCGTTCATCTATCGGAAATGTACACAGTACAGTACACAGGAGGATTAAGATTTTTTTTGTTGGGGAAATCTAGCTAGAAGCGCCGCTCAGCGGACTTTTCATGCGGCGGGTGCAATGGATAGGCACCCGGTCTCGCGCCGCCTGTTATACTTCTCTATGTGTCGCTATCGTGCTACAGTATTTTTGTTATGGATCATTAAAAC | |||||||||
gi|94355318|gb|BY863372.1|BY863372 BY863372 Etiolated seedling shoot Hordeum vulgare subsp. vulgare cDNA clone baet60b07 3', mRN AAACATAGAGAAGTATGACTT EST sequence (targeted fragment marked with yellow): CGCTCAGCGGACTTTTCATGCGGCGGGTGCAATGGATAGGCACCCGGTCTCGCGCCGCCTGTTATACTTCTCTATGTGTCGCTATCGTGCTACAGTATTTTTGTTAATCATTACAAAAGTCATGCC | |||||||||
gi|24279925|gb|CA002943.1|CA002943 HS08P12r HS Hordeum vulgare subsp. vulgare cDNA clone HS08P12 5-PRIME, mRNA sequence AAACATAGAGAAGTATGACTT EST sequence (targeted fragment marked with yellow): CGGCACGAGGATTACGCTTAGCATATTACTCCCTCCATTCCAAAATATAAGGCTTATTAGTTATCTGAAAAGTCAAGCTTCTATATGTTTGACCAAGTTCATAGAGAAATTTATCAATATCTACATACCAAATCATTATCATTAAGATTCACTCTTGAAATATATTTTCATGTTTTATTTATTTTATATTTTAGAAGATATGTATATATTTTAAATATAAATCTGGTCAAACATAGAGAAGTATGACTTCTGAAAAAATTAATACACCTTATGTTTTGGAACAGAGTGAGTACATAGTATATTGTAGCTATACTTGAGTTAGACCTGTGAATTTGTGACATAGTATATTGTAGCTAGACTTGAATTAGACCTGTGAATTTGTGCAGAAATGATTTTCAGTCTTGAAATAACTGATTGACTCCAGGCATCTACGCGAGGGGCATGAACATAATTCTTCTGAATAAAACTCATGTCCCTGCATCTCCAGTTATTTTTCTCTGTTTCAACTACAACTATACTTGTTTTGCAGCGCCTACCGTGCATTCTACATTCTAAACTGGATTTACCGTTATTTCACGGAGGGCCACCAAAGCAGATGGATCCCTTGGATTGCTGGTTTGGTCCAAACCGGTCTATATGCTGATTTTTTCTACTACTATTT | |||||||||
gi|59942345|gb|DN156451.1|DN156451 GCN004L14u GCN Hordeum vulgare cDNA clone GCN004L14 3-PRIME, mRNA sequence AAACATAGAGAAGTATGACTT EST sequence (targeted fragment marked with yellow): GTCGTGTCCGTTGCCGAGAGGGTCCGGAAAACGCCTGCGCAGGTTGCCTTACGCTGGGGGCTTCAGATGGGTCAGATGGGTCAGAGTGTACTTCCAAGAAGCGCCAACGAAGGAAGAATCAAGGAGAACCTTGACATATTTGATTGGTCCATTCCTGGAGAGCTGATGGCGAAATTCTCCGAGATCAAACAGGTGAGGCTGGTGAAAGCGGAATTTGCAGTTCACCCTCTGAGCGGTTACAAAACATTGCAGGACTTTTGGGATGGCGAAATCTAAAAAGCATGTGAACTTCTCCAGAGTGCACAAACAGGATGAGAGCTAGACACTGCATATGAAATAAGGAAAAAATCAAAGGCTGAAGCAAGCATTGCAGCAACTTCTTCTCCTAAGACACCAACTAAGCAAGGTACTCAACCTACTATTGCAACTTCAAGCCCAATGACAAGGTTGAGGGCACCAGTCATTACAAGTGCCTCTTCACTTCCAAGTGCATCTACAACAAGCAAAACTACTGATGCTAGCCCTCTTAAACAAGTTTAGTCCATTTGCTTGTGAGAACTATGTGAGAAATGCAACTGGTACTTCTCTATGTTGAACTATTAGTGTGACCCTTTTGGTGATGTTTGTGACAGCGGCCGCTCCATAGCTCATGAATCATACCCCACAAGTATAAGTTGTTACCTATTATGCACTTATGCAG | |||||||||
gi|13257176|gb|BG368077.1|BG368077 HVSMEi0015J07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010 (20 DAP) Hordeum vulgare s AAACATAGAGAAGTATGACTT EST sequence (targeted fragment marked with yellow): GGCCACGTCAGATTCCACATTGAATTTGCAGGATGTCCAGGGGCTAGTAACTTGGGTTATTGGTGAAGGCATGCCGCCTTCATGGGTGTTTGTTAAAAACAAGCCTCTTATCACAAAAGTTGTCCTTCTCTATGTTCCTGGCCTCAATGCAGCTTTATACATGTCTCAGTCACACCTCCTTTCTTCTTTGAAAGAATTGTGTGGCAATCCAAAACCTGTACTAGCTACAAGCTGTATACCAGATGAAAGGCGTACCATTGACGCACTCCTGACATGCAAAGTAAAGCGAAAGCCGCTGAGACAAACATCAAGCCAGTCGAATGAATGCTGATGGACGAGAATAATCGATTCTGGCTGACCTGGGGAATGTGCCGTGGGCTGTTGAGTGTAGCTCACTAGCTAAGACGACTTAGAATATTTGACTTCCCACTCTAGATTCCCAAATATTAAGACCTACTAATAATTCTCCAATGCTCACATACCCCTCAATAATCGTATTCTAACTTAATTTTAATATTATTACAACTAACAATGTACGCTCATTCTAATTCGACATACCAGTGATTTTTGCCGAAGGTTTTCATTATAAAAATCCAAAGTATTCCTGCATTTTTCCGTATCCATACGTGATGCTCTATTCCGCATTATCACAGCGTTTATTCGCAGCTTGTCAGCCGCATATATATCGTTTTTTTCCATATCTGATTTAGTCCCGTTTATTTATGTATTCCTTAATTAATTATTTTTTTATGCGTATGCTCTCTATCTCTCCAAAATTTATATNCGCGATATTTTATTCTTATTTATTTTTATTCCTCT | |||||||||
gi|161462828|gb|EX582333.1|EX582333 HDP16P19w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP16P19, mRNA sequence AAACATAGAGAAGTATGACTT EST sequence (targeted fragment marked with yellow): GTAGGAGTATTATAGTTCATTAGAATTGGGAGTGAAAATTAGAGGATGTTATTTCTAGTTCACTCATATTTCTCTTTGTTTTTGTTTCCTGTGCAGAGCGGTTCATTGTCCCTGTTCTTGTGGTTCACCATCCGCGTCTCTTTGTTTTTGTTTCAGTGGATTGCACAGGTGTTTCCACCAAATCTGCACCAGAACACTGCCAGAAACTGAGGAGAACAACTCATGACAGGGTGCAGTACGTTTGCCTAAGTCCCTCGATGTGGTGCGGTGCCTCGCCGGAGTTCTATTGCCGTTCCGGGCTTTTTTTTTCCTCCGGATTTTTGGTGTGCACAACGCTGCAGTACACCCAAGTCCTCGGTGGGGTGGGCGATGTGCATATTTGTGGATCAATTAGATTTACGATGCAGTGCACTGCGTTGTTTGCGGGGACAAAAGAATTGGTTGTATATTCTGGTGCTTTTTTTCCTTTCAAAAACTTAAAAGAAATCATGCAGCTCTTTTAGCCGTTTCTTGCAGTGCGATTTTTTATGTGAAGCAGTGCGTTTGAGTTTGACCGTTT | |||||||||
gi|257220102|gb|GT052807.1|GT052807 Tn1_2E11 Boron tolerant and intolerant bulked doubled hploid barley lines treated with 200 m AAACATAGAGAAGTATGACTT EST sequence (targeted fragment marked with yellow): CTCCCGGAATTGCCTTGAGAAGCACAGCTTGATAGCCACATACATTGCGGGTGCATTGAATGTCTCGAACATGATCCCAGGTCATCTTCTCTCTGTTTGCCTTTGGGTTCAGAGGAGCTTCTGTCAGCAAAACTGGATGTTCTTCAGGGGCAACACGAAGCTCATTGTAGAAGGTGTGATGCCAGATTTTCTCCATGTCATCCCAGTTGCTCACAATGCCATGCTCAATAGGGTATTTCAAGGTCAGGATACCCCTTTTTGACTGCGCTTCATCACCCACATAGGCATCTTTTTGGCCCATTCCAACCATGACACCTGTGTGCCGAGGGCGGCCAACACCTCGGCCGGAACCACGCTAA | |||||||||
gi|44806813|gb|CK123811.1|CK123811 BES1824105g20 BES1824 Hordeum vulgare subsp. vulgare cDNA clone MPMGp2010G20105 5-PRIME, mRNA AAACATAGAGAAGTATGACTT EST sequence (targeted fragment marked with yellow): AGAGAATTTCCGGACACCGACCCTAACACATTCTTCTCTATGTTTATATGGAAGATCCCTTGTGAGGGAAGCGTGATTCAAAGAGGAACTCGGCAATTGAGGGGTCCCAAACTTGAAAATCTCTTAGCAAATCCAACTAAAGAGAAGTTACGGTTTATTAAATCTTCACTAGCACATGATTATGACATGTTCTGCACAATGCCTAATTTCCGTGCTGAATGTTGTTGTATTATCTGTGGTATGGTTGTTGACTATTCCTGTGGAGGTTATAACTACATGAAGTGTGAGGCTACTATTGGTGAGAACACCAAATGTGGGCATGTTGGGCACCTTCACTGTGCTCTTAAAAGTTCGATGGCTGGAACTGTTGGAGGAGGTATTTTCTTGGATATGGAATATTACTGCAGGTGGTGTGATAACAAAACAAATTTGATGATGCATGTGGAAAAACTATTGGAAACATGTCGACCTCTTCAATCAAAGGAGAAAATTAAGACTATCCTAGACATGGGCTTATCCATCTTGAGAGGCTCAAGAAAAGAGCAAGCAAAAATCTTGGAGAACTACATGGGATCAGTGATGGCAAAGATTAACGATGGGGTTGATCTTAATGAAGTATGGAAAAANGAAGATTGTGATGGTGTGGCAACATTGGATGCAGAAAAAATTTTCCCACCAACCACTACTACCGTGATGCTGAGGGCTAGCCATTATCCATATCTAATAGTCTATAAGTTGAGACTGACTTGTANAGGGTTGTGAAAACCGTTCAAGTCCNAGCTCNAA | |||||||||
gi|24221046|gb|BU970253.1|BU970253 HB14B16r BC Hordeum vulgare subsp. vulgare cDNA clone HB14B16 5-PRIME, mRNA sequence AAACATAGAGA-AGTATGACTT EST sequence (targeted fragment marked with yellow): CGGCACGAGGATGATTCGATCATTCACTTTAGTCATCTTCGATGACACTTGTGCTTCAGCGATGACTTATGGTCTTGGGCCCAAGGTTAAAATCTTCGCGGTGCCATACCTACCAACTCAAACATAGGTGGCTTCGGCCACCACCCCCACATTCCTTATGGAATTTGTCTCAGAGGAACCTCTCATGTTTGTCTCTTTCACTCCAAGTTATTCTCTCTCTATGTTTATTTTTATTTTGGAGTGAGCTCACCATGTTGGCGTGACCATCTATATTATTCTTCCTCAAATTTTGATTTTCCATGATTTTTTGGACCTTTTTGGGCCTTCTGGAGCGGTACTACTGCTGCCCCAACGACACTACCGATGATAAGAGGTAGTACCACCCAAAGCAGCGGTACTACCGCTGAGTGGTACTACCTCTTCGAGTCTCCCACGGGGGGGTTATGAGGTCGGGCAGGGGCAGTTTTCTCCCCCTTTCCCATTCTTCCCCACTCCTCCTCGTGGGTGTCTCTCTCCAGGCGACCCCT | |||||||||
gi|24244447|gb|BU993501.1|BU993501 HD13M01r HD Hordeum vulgare cDNA clone HD13M01 5-PRIME, mRNA sequence AAACATAGAGAAGTATGACTT EST sequence (targeted fragment marked with yellow): GGAAACGCCTCATATANTTACCAACTTTGTACTTCTTTATGTTTTTGGGATCTAAATGATGCGAAACTACGAAAGGGAAATCGTCCGTTGAGGCGGCCATGTCAGTTCTTTCACATTGATAGGAAGATCTGATAGATTCCACAATTGTCTTAAAAAACTTTTTCTTGTTTTCGATCTGTTAAGTGTGGGTGTGGATGATGAGATCACAAGTAAAAATACAGTTATCCCTGTCTTACTTCCTTTGAAGGGTGCTGAGAATACTTTGAATCTGACACAATGTACTCTGCACTGATCACTTGTTTTTGGCTTTTGTTTTGAGTGTTAAGTTGATCTTGGCCGGTGATGATTAGTATTGGTTGCTGAACAGTCAACATAGATTGTCTGTTCCATGACGACATTTTCGAACTAGGACGGTCTGAGGCCACCTTGATCACTATACTTTTATGACTAACCATTGTTCTTCTGTTTTGCTTGTTTTTTTTCTTCTGTTGTTTGTGGTTGCAGGGCGCTTCTCCTGATGGCTGTAGCCTATTTGGCACTTGACAAGAAAAGTAGGAATAGCATTATGTCTACATGAGCTATAGCCTGGTGATGTTACACCTATNTGTAATTGT | |||||||||
gi|30079435|gb|CB877449.1|CB877449 HP04P08T HP Hordeum vulgare subsp. vulgare cDNA clone HP04P08 5-PRIME, mRNA sequence AAACATAGAGAAGTATGACTT EST sequence (targeted fragment marked with yellow): CGGCACGAGGGTCCTCTAGCGGCAGCAGCGTTTCTCTTTTTCATCTGTTATTTTCGCCGGCTAAAAAGGCAAAGAAGAGCATCAAGAGGTGCTCACAGTTTGGAGTGGCAAGGGAAAAATTCGGACTTCTCTTTGTTTGAGTTTGAACAGCTACTGGAGGCCACAAGTAATTTCTCAGAAGAAAGTAAACTTGGACAAGGTGGCTTTGGCGCAGTCTACAAGGGCCATCTTCCAGATGGGTCGGAGATAGCGGTTAAGAGACTTGCTTCACATTCAGGACAAGGTTTTATGGAGTTTAAAAATGAAGTGCAGCTCATAGCCAAACTCCAGCACACAAATTTGGTTAGGCTCTTGGGATGTTGCTCTCAAGAAGAGGAGAAAATACTGGTCTATGAATACTTGCCAAACAAAAGCCTGGATTTCTTCATCTTTGATGAGAATAAAAGAGCTTTGCTGGATTGGACAAAACTTCTAGCAATAATTGAAGGAGTGGCACATGGACTTCTTTACTTGCATAAGCACTCTCGGTTACTTGTCATACATCGTGATCTTAAACCAAGCAACATTCTCCTGGGACAGCGAAATGAATCCCAAAATTTCAG | |||||||||