| mature miRNA: AATCTTTAGTCCCGGTCCGTG species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|13108790|gb|BF617318.2|BF617318 HVSMEc0015K09f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstresse AATCTTTAGTCCCGGTCCGTG EST sequence (targeted fragment marked with yellow): GCGGCGAGGAGGACGGCGCGACGGCGAGGAGGACGGCGCGGCGGCGAGGAGGACGGCCGACGTCGAGCAGGATGACGGGCAGCCTAACGGCGTCGGTTGGTTCGTCGCTGTGCCGCGCCGGGCAGGAGAACGAGAGGAAGAAGAAGAGAAATGGACGAATTGGGTTGGAAATTTTCGAAGTCCCGCTTATATAGGTGGATCTATAGTCCCGGTTCGTGGCTCGGGCCGGGACTAAAGACCCCCTTTAGTCCCGGGTGGGGCCGGTGCCCGGGGCTGGGGCCTGGTTAAGGGATGAGTGGGTGGGGGGAAGAAGAGGAGGTTCAAGGTCCCGGCCCTGTTCCAAAAATATAATTTATTTCTTTTTAATTCTCAAAAACAATTTTATATCCCACACAATAACTACTTACTTAACCACTATTTCCTTTTTTACTTTATCTCTCCTACCACCCTTTTTAATATAATTTATTTTATATATTTATATTTTTATTTATTAATTATATAAATAATATTAATATATAAATTAATATATATATATTCTAATTCTATATTAATCATAATCACTTTTCTATTTAATAATTACAATTCATTTTATTATAAAAAAAAAAAAAAAAATAAAAAAAAAAAATAATTTTTAAAATATATTTTTTAAATTTTTTATATAAATATAATTTATTAATATTACATATATATATTTTATATTATATTATATATTTATTAATTAATAAATTTTAATATATTTTTAATTAATATTATAAATTAATATTATTTTAATCTAAAAAAAATAAAAAAAATAAATAAAAATAAAAAATAAAAAAAAAAAAAAACAAAAAAAAAAAAAAATAATAAATNNTT | |||||||||
gi|57829832|gb|CX631045.1|CX631045 GNW002I15r GNW Hordeum vulgare cDNA clone GNW002I15 5-PRIME, mRNA sequence AATCTTTAGTCCCGGTCCGTG EST sequence (targeted fragment marked with yellow): GGGGGGCCTTTACCCCGGTTAAGATCGGCTTTAGTCCCGGATCATCAACCGAGACTAAAGAGTGAGGACTAAAGGGTTGGCCACACCCGGGGACTAGAGTCCCTCCACGTGACAGCGAGTGTGTGGCGGGAGGTGGAGGACCTTTAGCTTCGGTTGGTGTCACCAACCGGGACTAAAGAGTTTGCATTTTTTTGTTTGGGTTTAGGGTTTAT | |||||||||
gi|94349949|gb|BY861994.1|BY861994 BY861994 Etiolated seedling shoot Hordeum vulgare subsp. vulgare cDNA clone baet40a02 3', mRN AATCTTTAGTCCCGGTCCGTG EST sequence (targeted fragment marked with yellow): GATGGATAGGAGACCACTAGGCATCCTCTTACCTTCTCCTTTCCTCCCTTGTTTCTTCTTTTCCGGTGACTCTCGCCGGAGTTGTTTTCCTTCACTAGTGGGGACGGGGCCTTTAGCCCCGGCCTGTAAGGGGCTTTAGTCCCGGTTCACCAACCGGGACTAAAGGGGCGGGACTAAAGGCCTAACCTTTAGTCCCGGCCCTCTTACAATCCGAGACTAAAGGTGCTTCACGTCGGCGCCTCGTAGCGCCCCAGAGGCAGGCCCTTTAGTCTCGGTTCGTTACACGGACCGGGACAAAAGATTTTCAGATTTTGCTGGTTTTTGGGTTTTTTTTTAATGAAATTATTTTTGGGTTTT | |||||||||
gi|21190541|gb|AJ474585.1|AJ474585 AJ474585 S00008 Hordeum vulgare cDNA clone S0000800243E09F1, mRNA sequence AATCTTTAGTCCCGGTCCGTG EST sequence (targeted fragment marked with yellow): GGGACTAAAGGGGCGGGACTAAAGGCCTAACCTTTAGTCCCGGCCCTGTTACAATCCGGGACTAAAGGTGCTTCACGTGGGGCGCCTCGTAGCGCCCCGGGGGCAGGCCCTTTAGTTCCGGTTCGTTACACGGACCAGGACAAAAGATTTTCAGATTTTGCTGGGTTTTGGGTTTTTTTT | |||||||||
gi|24238382|gb|BU987436.1|BU987436 HF14M02r HF Hordeum vulgare subsp. vulgare cDNA clone HF14M02 5-PRIME, mRNA sequence AATCTTTAGTCCCGGTCCGTG EST sequence (targeted fragment marked with yellow): CGGCACGAGGCTGCGGATAAGGTGAGGGCCCTCGAGTCGAAGATGGCGAGCCTGAAGGATGCTCTCAAGGAGATGGACACGGAGATGGAGGAGATCGCGGAGGAGAGGAGGAAGGGCCATGCTATTGCTGTGCTGCAGCTGGCGGCCGCGCCATGGTGATGCATGGGCGATTCGACATCGTCTTGCGGTCTTTTGTGGGCATCTCTTTCAGCTCATCACACTTGGTCAATCGACCTACTAGTTCTAGATCTAGTTTGTGTTAGAATTAAACCGAGGTACGCGGTCGATTCATCGAGAAACAAACACTGAGGGCTTTAGTCCCGGTTCACCAACTGGGATTAAAGGGGCGGGACTAAAGGTTAGGCCTTTAGTCCCGGCCCTGTTTCAAGCCGGGACCAAAGGTGCTTCACGTGGGCGTCTCGGAGCGTCCTCAGGGGCAGGCCCTTTAGTCCCGGGTCTTAACACGGACCGGGACTAAAGAATTTATGCAGATTTTGTTTATTTTTTGGTTTTAGAGTTTTAAGATTTAGGTGTTCGGGAGATT | |||||||||
gi|14528796|gb|AV836707.1|AV836707 AV836707 K. Sato unpublished cDNA library: Hordeum vulgare subsp. vulgare seedling leaves sec AATCTTTAGTCCCGGTCCGTG EST sequence (targeted fragment marked with yellow): AAAAAAAAATCTTTAATAGCAAAAAATGAAAGTAAAATTATTCACAAATTTTAAAGAATTCAAATTTGAAAACTAAATATTTAGTTGTAAGTAGAAAAAAACAAAATAAATAAAGCAAAGAACAAAACAAAAATAATGGAAAAAAATTGAAACTATATGAGAATTTATAGAGAAAATTCAACCTAAATTCAAAGTGAGGTCACAGTGCGTTTAGGCCCGTAAGCCTGCTTTAGAGAGGAGCTCGACATGGTTGGGACAACGGGGCTTATGAACGAGTCGCGGCTCCTCTCGACAAGCGAGGTGGGACTAAACTTTGGAATGCCGCCAGCCCAAGGTCTTTAGTCCCGGGTCGAGCCACGACCCGGGATTAAAGACCCTCATTTCCCGCCACTCCGCCTGCCGAAAAGGGGTCTTTAGTCCCGGGTCGTGGCACGGCCCGGGACTGAAGGTGGTCTTTAGTCCCGGTTCGGGCCACGACCCAGGA | |||||||||
gi|16335077|gb|BF267133.2|BF267133 HV_CEa0017A18f Hordeum vulgare seedling green leaf EST library HVcDNA0004 (Blumeria challenge AATCTTTAGTCCCGGTCCGTG EST sequence (targeted fragment marked with yellow): NNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNTTGGAACTCCCCCCGNGGCGGCCGCTCTTAAACTAGTGGNATCCCCCGGNGCTGCAGGTAAAATTTCCAAAACCGCAGAAGGTTCTGATATTTTTCAGTGCTCATGGAGTTCCTCTGGCATACGTTGAAGAAGCTGGTGATCCGTATAAAGCAGAGATGGAAGAGTGCGTGGATCTTATCATGGAGGAGCTCGAAAAAAGAGGAATGGAAAATCCATGTACACTTGCTTATCAGAGCCGAGTGGGACCAGTGTAATGGCTGAAACCCTACACTGACGAGACAATTATTGCTCTTGGGCAGAGAGGGGTAAAGAGCCTTCTAGCAGTTCCCATAAGTTTTTGTCAGCGAACACATTGAGACATTGGAAGAAATCGACGTGGGAGTACAAGGAGCTGGCTTTACAATCTGGTATAAAGCACTGGGGACGAAGTTCCTGCTTTTAGGTTGTAAGCCCACATTCTTTTCAGATCTTGCAGATGCTGATATTGAAAGCCTGCCTTATGTTGGCCCAATGGAAGTATCCAACCTTGAAGCTCGGAAGTAACTGGAGCCACTTTGAAAACGTAAGGAACTAGCTATCAACTTAAGAAATAAAAACGCAACATGCATCCCTTATCCGGTGAAATGCGATAGAAGAGGGGGCCGGAACAAAAGATTCCGCAGACCGGGACTTAAGATGTGTTGCTAATATCGGGCCGAATATAGGTATCCTGAGATCTCGAAGACACAACACAAACAAAGGACTAATAGAACAGTAGGATATATTGTGTCACCAAATCACTATTAAAATCCGAGTTAAGAGTGAAAGAAATTTTAGCGCTCCCCCAAGAGTAGATCCATATAGAAATTGAAAGAATTGAAAGAGTGTGACCAATATAATTTTTTAATAATATTATTCGTATTAAATAATCGAAAAAAAATAATAATAAAAAAAAAACACAAACAAAAAACGCCGCCATCCCAAACTAAACAAAACACAAACACA | |||||||||
gi|9419483|gb|BE421640.1|BE421640 HWM012cC.03r ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM012cC.0 AATCTTTAGTCCCGGTCCGTG EST sequence (targeted fragment marked with yellow): TGGGGNCCGCGGGTAATGAGCGGCATTACCCTACTAACGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCATCGGCTGCATCTCGAAAAGAATGCATGCCTTCTCTGTAAGTGGTTGTGCGTCAATCACCGTACATCCATGGATGGCTCATCTGTGTTATACGACAGTATATCAAATACAATCACGATCCTAAAAATTAGTACCGCACGGTCTAAACGAGGAAATATAGTTGCTAACCTTTTAGAATAAGTAGAAATAAAGAGGAAGAGGTTTAAGCGTGGCTCAGGCATCTCATATCGTAGTTGTGTTCGGTGAACTGAAGCGGCATCGCTCTAACACACATTTCAACAAACACCTCTAGTGCATCAAAAAAAGTGGAGAGCAAGCACCCACCCACAATCCTCCATCCAAGAAAAATGCAAGGAAGAGGGGAGAGGGGGGCTGTGCTATATATAGGCAGAGGACTTTAGTCCCGGTTTGAGACACGAACTGGGACTAAAGGTGGCGCACATGCGGGCTGCCCACCGCGTAGCCCTTTAGTCCCGGTTTGGGACACGAACCGGGACTAAAGGCTCCTTACGGGCCGGGACTAAAGCCTCGAGGGGGGGCCCGGTACCCAATTCGCCCTATAGTGAGTCGTATTACGCGCGCTCACTGGCCGTCGTTNTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTGNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCANNNNNCNNNCNNATNGNNNNNNNNGNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNAANNNNNNNNNNNNNNNNAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCG | |||||||||
gi|166072613|gb|FD522424.1|FD522424 RUS56A04w HF Hordeum vulgare subsp. vulgare cDNA clone HF02P09, mRNA sequence AATCTTTAGTCCCGGTCCGTG EST sequence (targeted fragment marked with yellow): AAACCATTCAAATTTAAAAAATAATTGCACAAACAGAAACTAGACAAAATTTTGAATCTAATGCAAAAAAGAATCACTCAAAAAAATTAAATATCCTAAAAGATATAAGCAATTTAAAACAGAAACTACAAACAGAAATAAAATTTAAAAACAGGAAAAAATAAAAATACAAAACCCCTTTAGTCCCGGTTCGTGGTCCCGGTTCAAAACACGAACCAGGACTAAAGCCTCCAAACCATTTAGTTCCGGTTCCAGACACGAACCGGGACTAAAGGTCCCTCTTGAACCGGGACTAATGACCGACCGGCACCCTTGCCGTTCGAACCGGGACTAATGCTAACATTAGTCTCGGTTCGTAATGAAACCGAAACTAATGTGTAAATTGAGCTGGGACGGAAGCCCCTTTTTCTACTAGTGGCACTTCTACAAACACGTGGCTGTGGACCACATGTCATCCTCACACTAGAAATCAGGAAACAAGTACTAACTGCAGACACCGGACATTTGTCGTACAAAATACTTCCTTTGTACCTGAATAATTGCAGTTG | |||||||||