mature miRNA: AGTACTTCCTCCGTCCCAAAA species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|57826274|gb|CX627487.1|CX627487 GBN005G24u GBN Hordeum vulgare cDNA clone GBN005G24 3-PRIME, mRNA sequence AGTACTTCCTCCGTCCCAAAA EST sequence (targeted fragment marked with yellow): AACCCTAGTTAATGTGAATCTGCAGTTGACTCCACACATAGACATAGGTGAGTCTTTTGATTCTCCTACTTTCAGTTCTCGTACATTTCGTTTGTTCCAATTCAAATGCCGAAACATGAAGACCTAACAAAGTCCTCTCTCCCTCCAAACTAAAACCACGACACTTATTATGAAACGGAGGGAGTACTACCATCTCAAGGCTGGTGGAAAATACATTCCACACATTTAAATATCTCGCCGAAATCCTTCCCTTCCGCTTCCTCTTCTTCGAAACCAGAGACCCCTTCATGTTGGGACATCAACTCCCTCGTGTAGCGGCCGCTTGGAAAACATGGAAATGCATGTATCATATTTATTCAGGATGACCAGACCTGACACAGTACCCCAGAGTAATCTGACATGTTCCAAAATCTCTACCCTCACGCCTTCACGGAAACCCTCCAAGGCTTACAGTATGCCGAAGGAACCTAGTATCCAGTAATAATGTTGAACTTCAATAACGATGCGACACTAAGCAGTCTAGCATACAACAGAGGGTAATCAAGCTCCGAGCACGTGAAGCATGACTGCGTTTTGCGCGTGCATTCTGTTCTCTGCCTGGGAGCGGCCGCCA | |||||||||
gi|30070235|gb|CB868258.1|CB868258 HC03K13w CH Hordeum vulgare cDNA clone HC03K13 5-PRIME, mRNA sequence AGTACTTCCTCCGTCCCAAAA EST sequence (targeted fragment marked with yellow): CACGCGTCCGCACTTATTTTGGGACGGAGGGAGTACTATCAACATAATGATGATGCATATTGTTGCATGTATGGACAAAAGTTTGATATGTTGTCGTTCAGTATTTTGTGGTAAACCAATTAATTTTAATGATTACTAGATGAATATGCGTGC | |||||||||
gi|24220031|gb|BU969238.1|BU969238 HB10P07r BC Hordeum vulgare subsp. vulgare cDNA clone HB10P07 5-PRIME, mRNA sequence AGTACTTCCTCCGTCCCAAAA |