| mature miRNA: ATAATCCCTCAGTCCCAAAAT species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|18112189|gb|BM368799.1|BM368799 EBem08_SQ004_K04_R embryo, 40 DPA, no treatment, cv Optic, EBem08 Hordeum vulgare subsp. vulg ATAATCCCTCAGTCCCAAAAT EST sequence (targeted fragment marked with yellow): TGAATGGCACCTGACGTGCTGCCAAGTGAAAGCTGCCGAGATATGCTCCCTCCGTCCTAAAATTGTCCTAAAATAAGCGTCTTAAGCTTAGTACAACTTTTATACTAACAATCAGTACAAAGTTGAGACAGTTATTTTGGTACTGAGGGAGTATATAACTACGGTCGAAAAAAGCGACGTGAGAGAGTCCGTCTGATTTTCGTTGTTCATTTGGATTAAAGTATTGAATATATATTTATGCATAGAGAGAATGGCGTTTTGGAGGCCGAGCGTAAAGAACCCTAGAAGAAATCC | |||||||||
gi|18232166|gb|AV936369.1|AV936369 AV936369 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three lea ATAATCCCTCAGTCCCAAAAT EST sequence (targeted fragment marked with yellow): CGTCTGGCTCCCTGCTGATGCAGGGTGGTGCTGTAGTGNAGGTCACTAAATAAGAGAATGGTTCTCATGCTCGAATGTGATCCTGGTGGGATCAGTAACAGGATGTAGATTTGTTCTTGCCTGGTGAGCGTTGGCTTTTGGAGCTCGACATTTGGTGGTCTGTAGCGAGAAGGATTATCTGGCTGTGCTAGCTCTTGGTTGGCTAGTGTCATAAAACTTGGATCACTGGTTCATCTTTTGGATATTTTGCCCTAAAACCTGGAGTCAGAGTACTTCATACTCCCTCTGTCCCAAAATAAGTGTCTCAAGTTTGTACTAACTTTAGTACAAAATTGTACTAGAGTTAAGACACTTATTTTGGGACTGAGGGATTATGAAACAAAATTGATAAATCATATATGTGTTGGATGTTTGTACTTCTTTGGGAGCAGTCAGCATGTGGATGCTCGGGATATCCAGGTCTGATCCTTATCTTGGTTTCTCTTACTTATTAGTTCCCCCAGTAGNGCATGNCATTTCCGATGATG | |||||||||
gi|21182499|gb|AJ466543.1|AJ466543 AJ466543 S00008 Hordeum vulgare cDNA clone S0000800101A05F1, mRNA sequence ATAATCCCTCAGTCCCAAAAT EST sequence (targeted fragment marked with yellow): TTTTTGAGCCACTTATTTTAGAACTGAGGGAGTATGCGTTACAGATGAAGATGGTTTCTTTGTGTAGACTACAAATGTACAAAATATGAAAGTTGGGTTGCAATTCCACTACGTGTGATGTTTTTTCATAGAAAGATACTATGGAAGTTCATAGAGTAATTTTGAGGGAGTTCAAACTGAACTGAAGAACACGTAGCTGATAATCTTGTTCTGGAGGACAGCTTGAGTGTTGGGGAAGCCGCCGGCAACCGCGTCCTCAGCCGCCTCCACAGCATCAGGGAGCACATCGGTGACTCCCTCTTCGCGCACTCAAATGAGCTTGTTGCAGTCTTCACCAGATTGGTCAACCTTGGAAATGGAATGCTGCAGTCCCACCAGATCATTGCTGAGTACAACGAGCTACCCTACCGCAACATTTAA | |||||||||
gi|24307550|gb|CA029586.1|CA029586 HZ65K06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65K06 5-PRIME, mRNA sequence ATAATCCCTCAGTCCCAAAAT EST sequence (targeted fragment marked with yellow): CGGCACGAGGCTCAAATATTGGGGCTGAGGGATTCAAGTTAAATCCTGTTGATGTCCCTATGGTTCGGTAGGTTCACAGCCTGCTTGTGTAGGTGGCGCTTATGAACGGGCTGGGACGTGTAGCTCCACGAGATGCTATGCAGAGGCTGGTATTCCGTGTGACCGGGAGGCGGGGAAATCTCAAGGTTTACGTTTTATAGGTTTGCTGTGGATGGATGATGGGGTTGAGCCAACTTGGTGTGGTAGGTTGATTAGCTTTGCTTTTATGAATGTTCCAATGATGGAGAACTGCTTGGTTCCTTAGCAGACTGGAGAATGTTTCAGAAACCATTAGAAATGTGCTTTTAGAGAAAGAGGTGATACCTGTCGTCCCATTGGAAGTGGAAGATGCCGTTGTTGGTCAATTATCTGGTTAACACGCAAGGTGCTAAACAAAATCCTTCATAGAGTTTACGTTGGATATAGCAGGAGTTGCTAATGTTCAAGGTAGATGATGTCAGTGTAATAATTGAAGAAATGTTATCTCAAAGTTTATTGGGATGTATGCTTCCTTGTTGCTGCACAAACTATAGCT | |||||||||
gi|21182500|gb|AJ466544.1|AJ466544 AJ466544 S00008 Hordeum vulgare cDNA clone S0000800101A05F2, mRNA sequence ATAATCCCTCAGTCCCAAAAT EST sequence (targeted fragment marked with yellow): TTTTTGAGCCACTTATTTTAGAACTGAGGGAGTATGCGTTACAGATGAAGATGGTTTCTTTGTGTAGACTACAAATGTACAAAATATGAAAGTTGGGTTGCAATTCCACTACGTGTGATGTTTTTTCATAGAAAGATACTATGGAAGTTCATAGAGTAATTTTGAGGGAGTTCAAACTGAACTGAAGAACACGTAGCTGATAATCTTGTTCTGGAGGACAGCTTGAGTGTTGGGGAAGCCGCCGGCAACCGCGTCCTCAGCCGCCTCCACAGCATCAGGGAGCACATCGGTGACTCCCTCTTCGCGCACTCAAATGAGCTTGTTGCAGTCTTCACCAGATTGGTCAACCTTGGAAATGGAATGCTGCAGTCCCACCAGATCATTGCTGAGTACAACGAGCTACCCTACCGCAACATTTAAGAAGGGAACCACATCCTAGCTGTGGAGGAACCACCGAGTGACACGGTGAATGCTCCAGCT | |||||||||