| mature miRNA: CCTTTAGTCCCGGTTCGTGTC species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|40952146|gb|CK566572.1|CK566572 HO03P16w HO Hordeum vulgare cDNA clone HO03P16 3-PRIME, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): ATGTAAGACCTTGTCGTCTCAACTTCTATTTTTGCGGATGATATTACACGACCTGGGACAAAAGGAAGCTGCTTGCTATCTACACATTACTCAATACTCAATACACATACACAATACACAATACACAATACACGTTATTCATTTTAGCAACTTAGATGTAAGGTTTCATATAGCGTGACAAGAATTTGACAGGGAGAACGCCCTCCAGAACTCGGTGTCCACGGCCCTAGAAGGACAAAAGTTCAGCATTGGCAACACTTGGGGCATCAGCCAACGACCTGGAAGTGAGAGTGTGCCAAACCTTGTCCATAACGTCTCATTTTACTGAAAGACCATATACCTTCATTTCCTTTTCCAGCTACGTTTGGACCACGTAGGATCCAAAATCAGGAAGGGCCCTCCCTATATTTTTGCCACGCTTAACTGTCCTTGCCTTCTTCCTGGAACGAAAACAAGGCGTAGAAGCCTCCTCCGACGGCGGCGGCGGCCATGGCCCAAACGAGGATCTGCACGGGCAGCGGCATGATGGCCGCGACTGTATAGCTTAGAACGGCCGTGAGCATGGCGGTGAGGACCCAGACGGCCACCTTGAGCCTCCGTCTGGCCGGCGAGCCGGGCGCGGCGCTCTCGAACCTCCTGTGGCAGTAGCAGAGCAGTGCGAGGTCGAGGTAGGAGAAGGCCACGAAGCCGGCCGCGGCCT | |||||||||
gi|60289021|gb|DN187260.1|DN187260 HO26J22w HO Hordeum vulgare cDNA clone HO26J22 3-PRIME, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): GCGGATGATATTACACGACCTGGGACAAAAGGAAGCTGCTTGCTATCTACACATTACTCAATACTCAATACACATACACAATACACAATACACAATACACGTTATTCATTTTAGCAACTTAGATGTAAGGTTTCATATAGCGTGACAAGAATTTGACAGGGAGAACGCCCTCCAGAACTCGGTGTCCACGGCCCTAGAAGGACAAAAGTTCAGCATTGGCAACACTTGGGGCATCAGCCAACGACCTGGAAGTGAGAGTGTGCCAAACCTTGTCCATAACGTCTCATTTTACTGAAAGACCATATACCTTCATTTCCTTTTCCAGCTACGTTTGGACCACGTAGGATCCAAAATCAGGAAGGGCCCTCCCTATATTTTTGCCACGCTTAACTGTCCTTGCCTTCTTCCTGGAACGAAAACAAGGCGTAGAAGCCTCCTCCGACGGCGGCGGCGGCCATGGCCCAAACGAGGATCTGCACGGGCAGCGGCATGATGGCCGCGACTGTATAGC | |||||||||
gi|21802663|gb|BQ661530.1|BQ661530 HM03N22u HM Hordeum vulgare subsp. vulgare cDNA clone HM03N22 3-PRIME, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): GAGGCTTTAGTCCCGGCCCGTAAGGAGCCTTTAGTCCCGGTTCGTGTCCCAAACCGGGATTAAAGGGCTACGCGATGGGCAGCCCGCATGTGCGTCACCTTTAGTCCCGGTTTGTGTCTCAAACCGGGACTAAAGTCCTCTGTCTATATATAGCACAGCCCCCCTCTCCCCTCTTTCTTGCATTTTTCTTGGATGGAGGATTGTGGGTGTGTGCTAGCTCTCCACTTTTTTTGATGCGCTAGAGGTGTTTGTTGAAATATGTGTTAGAGCGATGCCGCTTTAGTTCACCGAACACAACTACGATATGAGATGCATGAGCCACGCTTAAACCTCTTCCTCTTTATTTCTACTTATTCTAAAAGGTTAGCAACTATATTTCCTCGTTTAGACCGTGCGGTACTAATTTTTAGGATCGTGATTGTATTTGATATACTGTCATATAACACAGATGAGCCATCCATGGATGTACGGTGATCGACGCACAACCGCTTACAGAGAAGGCGTGCATTCTTTTCGAGATGCAGCCGATGCGAACAAGCATGGTGGTGGCTATATGTTTTGTCCATGTGTTGAATGTCGGAATGAGAAGGATTACACTTCCTCAAGAGTCATTCAGAGCCACCTGCTTCGGTCC | |||||||||
gi|40955559|gb|CK569985.1|CK569985 HO15A23w HO Hordeum vulgare cDNA clone HO15A23 3-PRIME, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): GATCGTACGAGAAATTTTATTATATATTCATCAACGTGTACAATATGTAGTAGCTAAAATATGTTTGAAATGAAAAAGAGTTAAATGGAATACGCAAAATCAAAATGAAAAATAAACTATAAACCCTAAACCCAAACAAAAAAATGCAAACTTTTTAGTCCCGGTTGATGACACCAACCGAAGCTAAAGATCCTCCACCTCCCGCCACACACTCGCTGTCACGTGGAGGGACTCTAGTCCCCGGGTGTGGCCAACCCTTTAGTCCTCACTCTTTAGTCTCGGTTGATGATCCGGGACTAAAGACCGTTTCTAACCGGGACTAAAGGCCCATTCTCCACTAGTGGGCATTTGCATCGATTGATGCACACAGCCATTCTATTGTATAATTTTTAAGGTATTACATAAATAGAAAAAAAAAACACGACCACGAATAATACATTTGTACATAAGACTCTCGTGTTCACTAAACCTATTGTTATGCTACCATAGAAACCTCTTGAATAAAGCTCGTACGTCCATCTCCAAATGCTTGCATCCAAAGTCTCGAAACTTCAAGCCTCCACATGCTGATGTAAGGAGTACGTACGGATTCGGTGCGTAGCTATGTAGATAACCTTGTCATGTCAGAAATATGCTATTCAAAAACGCATATCCAGCAACCACCCCTCCTTCATTTAGTGAAGCTGCTTTGGTCCTCAAC | |||||||||
gi|60286377|gb|DN184794.1|DN184794 HO36C05w HO Hordeum vulgare cDNA clone HO36C05 3-PRIME, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): CATCACGCCACTCGTCATGCAAAATGGCATGACCAAACTACACTGCCACAGTATTATCAGTCTTTTCACGCCACCTTCTTTAACAAAAATATGTAAGACCTTGTTGTCTCAACTTCTATTTTTGCGGATGATATTACACGACCTGGGACAAAAGGAAGCTGCTTGCTATCTACACATTACTCAATACTCAATACACATACACAATACACAATACACAATTACAGCGNTNTAAATTCATTTTAGCAACTTAGATGTAAGGTTTCATATAGCGTGACAAGAATTTGACAGGGAGAACGCCCTCCAGAACTCGGTGTCCACGGCCCTAGAAGGACAAAAGTTCAGCATTGGCAACACTT | |||||||||
gi|60277794|gb|DN182537.1|DN182537 HO20G01S HO Hordeum vulgare cDNA clone HO20G01 5-PRIME, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): GCACGAGGCTCATTCTCCTCCACCTCTTGAAGCCATTTCTTGAAATAGGTAAGAAAACGCGACACCATGGCACTGTCATTCGTGTACACGACATTGAGTTCGGTCGTGCCATGTGCGAGCACCTCTCTGTAGCGAGTGGTTGGCATGGTGGAAGAAGTGAAGGGAAGAAGAGAGGGGAAGAAGAGAGGGGAAGAAGAGAGGAGAGCGAGAGAGAAGAAGAAACAGAGAAATGGCGAATCTTCTTTGGTTCACGCTTTTCATCGATCGAAACGATGCGGGAGGCAAACTTTTTGGACCTTTAGTCCCGGGTTGAGCCACCAACCGGGACTAAAGGGGGATACGAACGAGTGCCACCACCGCGGCACGCCACGTGTCAGACCTTTAGTCTCGGGTTGAGCCACCAACCATGACTAAAGGGGGATACAAACGGTTGCCACCACCGCGACACACCACGTGTCAGTCGCTAGATCTTTAGTCCTGGTTTTTGGCATGAATCGGGACTAATGCATCGAACCGAACCACGACTAATGCAT | |||||||||
gi|21150068|gb|BJ471565.1|BJ471565 BJ471565 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three lea CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): GGCTAGGCTTTAGTCCCGGTTTACTAGGAACCTCTAGTCCCGGTTGGTGTTACCAACCGGGACTAAAGGGTGGTATCAGGGTTTTGTCAGGCTGGGGCCCATGCGAGGGCAATTAGTCCCGGTTGGTAAATACAAATCGGGACTAGAGATAGATCTTCGGTCCCGGTTTATATCACCAACCGGGACTAAAATTATCACTATAAATAGTGCTTCGTCCAGCCCGAGCCCAAGTTCTCTATTTTCTCCTTTCTCTTCTGTGTTCTCTTCCCTTGCTCGAGTTCATCCTCAATTTCTTCCTAGATTTGTGAAGATTTGAGGCACCCCATCCATCCAAGTGTTCACAAAGGTTAGCAACTTTGTCCTTTCATCTCTCATCCCCGTCCTAACCACCATCGATCGCCCTCATTGTCTCGTCGCTGGCACCACCTTGGTGATCCTCTTGTTCTTATCTTTTTATTCCACAAAAATCTTCTTTGGATGATTTAGATAGTTTTCTTACTTGTATGATTGTTTGTTATACATAGTGCCATGGTCTTGATAT | |||||||||
gi|24273554|gb|BU996571.1|BU996571 HM14A17r HM Hordeum vulgare subsp. vulgare cDNA clone HM14A17 5-PRIME, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): AGAAGAAATTATTTTTTGTCATTTAATTTTGCTATTGTATAGTGTATATGCTTAAGTGTTAATAGTGTTTCTTAGATTATTGCTTAATTTTGCTATTGTATATGCTTAAGTGTTAATAGTTTAATTTTGCTATTGTATATGCTTAAGTGTTAATAGTTTATTTTTAGCAAGAAAATTAATAAAACTAGTTTAATTTTGCTATTGTATATGCTTAAGTGTCCGGGACGGGGCTCCGCCCGGCTGGTATTTTAGAGTTTAGGTTCTAGCCAAGACCCGGGACTAAAGGTCCTCCTATATAAAACGACACTTCGAAGTTTCCAACCCCTCTTATATAGTTTTTTAGTTTATTAGTTAATCAAATGTCCATTTTTTGCAGAACTATGGATCCACATATCAGGAACCTCGAAGAGGAAGAACTTCTCGAAGATATAATCAAAGACGGCCCCGACGTTGAACCAGCTGAATCTTCGACGTCATATCTAAACGACTCCAGATATGGAATGGAGGTCGAGCGACATGAAGATGAAGCCGATGGGGCAGGAGATAGGTCCAATGACGGAGAAGGTGATAGCTCCACTGATGGAGAAGC | |||||||||
gi|16313947|gb|BF618436.3|BF618436 HVSMEc0005L01f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstresse CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): CATGTGGAGGCCCATCTGTCTCGGTTCGTGTAAGAACCGGGACTAAAGGCCAAGGGCATTAGTAACGACCTTTTAATCCGATTTCCGAAACCGCCACAGAAGGCCCTTATGAACCGGGACAAAAGGCCCTTTTTCTACTAGTGTATGGTCCTCAAAAATCTGGGACTCTCGGTTCAACCTTATTTTTTACATGAGATATGGGTCCATTAATGTACATGCGCATTATCTTATGTAGTGAGATATATAGGATTTAGTGCATAATTCCAAATTGGGATATACTATGGTAGATATTAAATGTAGTGATATACTCTACGTATGTGCAGGGTGTGTACAGATTCAGGTGCAATATTAAATAACGTAATTTCCAGAAATTTGTAGTTGATGTACTCCTAAAAGCATATAAGTCCTCGTGGATGAATGGCACTTATGTGGGTCAAGCACGTGCCCAGGTATGGGGACAGAGCAAAGCGGTCCAAATATGTAGGGGGAACGCATGAGGACGGAGAGCGGCGAACGGTAGGGAAGACCGGGGAAACGGCAGAGCTGTAGAAAACGAAAGTGGATATAGCTAGACGAAGCAGAGAGGGGAAACACGCGCGGCGATAGACATGTAGGGGGCACGTAGCGAGTTCAACTGAGGGAGTGAAGGGAGTGAGGCGGTTGCTGAAGAAAACACGGGGAGGTGAGGAGCAAGCGGGGAGGAAACAGTGATAAGAGGCGTGAAAATGCACGAAGGGATGCGACGCGCGCGGAGAACATGAAGAGAGGGCGAAGATATAAGATGACTGAGCAGAGAGACGGAACGGAGAGGAAAACAGACAATGATGGGAGGGACAATATGCCAAAACCTCAAGGGCG | |||||||||
gi|24271189|gb|BU994206.1|BU994206 HM06C18r HM Hordeum vulgare subsp. vulgare cDNA clone HM06C18 5-PRIME, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): ATCTTATATATATATATATATATGCATAATTATTTCTATTTAAATTATATTAAAACTATTTCCCGAACACCAAACGAGGCATCACGTTAATCTCCCGAACACCTAAACCCTAAAACCCAAAAATAATTTCATTCAAAAAAAAACCCAAAAACCAGCAAAATCTGAAAATCTTTAGTCCCGGTCCGTGTAACGAACCGGGACTAAAGGGCCTGCCCCTGGGGCGCTACGAGGCGCCCACGTGGAGCACCTTTAGTCCCGGCTTGTAAGAGGGCCGGGACGAAAGGTTAGGCCTTTAGTCCCGCCCCTTTAGTCCCGGTTGGTGAACCGGGACTAAAGCCCCTTACGGGCCTGGGCTAAAGGCCCCGTCCCCACTAGTGGTGGAAGAATGAGTTGAAAACGTTTGTCGACAAAGAAGAGACACCAGAATTCACCGGCCGGTTTGAGAAGATCGGAGATCAATGACCCGCATTTGTGGCCCACAAGACATTGGAAAAGAGTAAGAAGATGTCAGCGACAAACAAGAAAATGCTACGAAGAAGAAGCATCACCATCGCACGGGNGTCAGGTGGTTACCTCAAAGCCCGACCTTTGTGGGACAAGGCTCAGAATGAC | |||||||||
gi|161476416|gb|EX584278.1|EX584278 HDP04O20T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP04O20, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): ACTTACAACTAATTTTTTGTTTTTTGGCACCAACCGGGACCAAAGGCCGTGTGCTGGCTCGGTGCGGTGCTATGTTTAATTATTTTTTCTAGTTTCTTTGCTTTATTTTTTGTTTCTAATTACTTATTTATTTTCTTTTATGATAATTCTTTTAGTCCGGACTTCTTGTTTTATTAAAGTTTATTTTATTTTATTTTATTTCTACTTACATCATTAATTTTCATCCCTTTGTGACTTCATATGTTATTTTTCATGCATTTACTGATTATTTTGAGCTATAAGACCCTGAAATTGAAAAGCATTTCAAATGAACTCTAAAAAGGTTGGAATTTGGCATGGTATCATCATTTCATCCACATAGCATATGCAAGAAAGTTGAGAGGGTTACGACAAAAACTGGATGCACTTCGTGTACAAAACGGACAATCTCTTTCGAAGTATCAGGATTTCATACGGAAACTTTTCTGTTACAACAGGCATTTCAAATGAACTACGAAAAGGTTGAAAGTTGGCATGGTATCATCAATAATAG | |||||||||
gi|24238382|gb|BU987436.1|BU987436 HF14M02r HF Hordeum vulgare subsp. vulgare cDNA clone HF14M02 5-PRIME, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): CGGCACGAGGCTGCGGATAAGGTGAGGGCCCTCGAGTCGAAGATGGCGAGCCTGAAGGATGCTCTCAAGGAGATGGACACGGAGATGGAGGAGATCGCGGAGGAGAGGAGGAAGGGCCATGCTATTGCTGTGCTGCAGCTGGCGGCCGCGCCATGGTGATGCATGGGCGATTCGACATCGTCTTGCGGTCTTTTGTGGGCATCTCTTTCAGCTCATCACACTTGGTCAATCGACCTACTAGTTCTAGATCTAGTTTGTGTTAGAATTAAACCGAGGTACGCGGTCGATTCATCGAGAAACAAACACTGAGGGCTTTAGTCCCGGTTCACCAACTGGGATTAAAGGGGCGGGACTAAAGGTTAGGCCTTTAGTCCCGGCCCTGTTTCAAGCCGGGACCAAAGGTGCTTCACGTGGGCGTCTCGGAGCGTCCTCAGGGGCAGGCCCTTTAGTCCCGGGTCTTAACACGGACCGGGACTAAAGAATTTATGCAGATTTTGTTTATTTTTTGGTTTTAGAGTTTTAAGATTTAGGTGTTCGGGAGATT | |||||||||
gi|94349949|gb|BY861994.1|BY861994 BY861994 Etiolated seedling shoot Hordeum vulgare subsp. vulgare cDNA clone baet40a02 3', mRN CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): GATGGATAGGAGACCACTAGGCATCCTCTTACCTTCTCCTTTCCTCCCTTGTTTCTTCTTTTCCGGTGACTCTCGCCGGAGTTGTTTTCCTTCACTAGTGGGGACGGGGCCTTTAGCCCCGGCCTGTAAGGGGCTTTAGTCCCGGTTCACCAACCGGGACTAAAGGGGCGGGACTAAAGGCCTAACCTTTAGTCCCGGCCCTCTTACAATCCGAGACTAAAGGTGCTTCACGTCGGCGCCTCGTAGCGCCCCAGAGGCAGGCCCTTTAGTCTCGGTTCGTTACACGGACCGGGACAAAAGATTTTCAGATTTTGCTGGTTTTTGGGTTTTTTTTTAATGAAATTATTTTTGGGTTTT | |||||||||
gi|166072613|gb|FD522424.1|FD522424 RUS56A04w HF Hordeum vulgare subsp. vulgare cDNA clone HF02P09, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): AAACCATTCAAATTTAAAAAATAATTGCACAAACAGAAACTAGACAAAATTTTGAATCTAATGCAAAAAAGAATCACTCAAAAAAATTAAATATCCTAAAAGATATAAGCAATTTAAAACAGAAACTACAAACAGAAATAAAATTTAAAAACAGGAAAAAATAAAAATACAAAACCCCTTTAGTCCCGGTTCGTGGTCCCGGTTCAAAACACGAACCAGGACTAAAGCCTCCAAACCATTTAGTTCCGGTTCCAGACACGAACCGGGACTAAAGGTCCCTCTTGAACCGGGACTAATGACCGACCGGCACCCTTGCCGTTCGAACCGGGACTAATGCTAACATTAGTCTCGGTTCGTAATGAAACCGAAACTAATGTGTAAATTGAGCTGGGACGGAAGCCCCTTTTTCTACTAGTGGCACTTCTACAAACACGTGGCTGTGGACCACATGTCATCCTCACACTAGAAATCAGGAAACAAGTACTAACTGCAGACACCGGACATTTGTCGTACAAAATACTTCCTTTGTACCTGAATAATTGCAGTTG | |||||||||
gi|13108790|gb|BF617318.2|BF617318 HVSMEc0015K09f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstresse CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): GCGGCGAGGAGGACGGCGCGACGGCGAGGAGGACGGCGCGGCGGCGAGGAGGACGGCCGACGTCGAGCAGGATGACGGGCAGCCTAACGGCGTCGGTTGGTTCGTCGCTGTGCCGCGCCGGGCAGGAGAACGAGAGGAAGAAGAAGAGAAATGGACGAATTGGGTTGGAAATTTTCGAAGTCCCGCTTATATAGGTGGATCTATAGTCCCGGTTCGTGGCTCGGGCCGGGACTAAAGACCCCCTTTAGTCCCGGGTGGGGCCGGTGCCCGGGGCTGGGGCCTGGTTAAGGGATGAGTGGGTGGGGGGAAGAAGAGGAGGTTCAAGGTCCCGGCCCTGTTCCAAAAATATAATTTATTTCTTTTTAATTCTCAAAAACAATTTTATATCCCACACAATAACTACTTACTTAACCACTATTTCCTTTTTTACTTTATCTCTCCTACCACCCTTTTTAATATAATTTATTTTATATATTTATATTTTTATTTATTAATTATATAAATAATATTAATATATAAATTAATATATATATATTCTAATTCTATATTAATCATAATCACTTTTCTATTTAATAATTACAATTCATTTTATTATAAAAAAAAAAAAAAAAATAAAAAAAAAAAATAATTTTTAAAATATATTTTTTAAATTTTTTATATAAATATAATTTATTAATATTACATATATATATTTTATATTATATTATATATTTATTAATTAATAAATTTTAATATATTTTTAATTAATATTATAAATTAATATTATTTTAATCTAAAAAAAATAAAAAAAATAAATAAAAATAAAAAATAAAAAAAAAAAAAAACAAAAAAAAAAAAAAATAATAAATNNTT | |||||||||
gi|60277794|gb|DN182537.1|DN182537 HO20G01S HO Hordeum vulgare cDNA clone HO20G01 5-PRIME, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): GCACGAGGCTCATTCTCCTCCACCTCTTGAAGCCATTTCTTGAAATAGGTAAGAAAACGCGACACCATGGCACTGTCATTCGTGTACACGACATTGAGTTCGGTCGTGCCATGTGCGAGCACCTCTCTGTAGCGAGTGGTTGGCATGGTGGAAGAAGTGAAGGGAAGAAGAGAGGGGAAGAAGAGAGGGGAAGAAGAGAGGAGAGCGAGAGAGAAGAAGAAACAGAGAAATGGCGAATCTTCTTTGGTTCACGCTTTTCATCGATCGAAACGATGCGGGAGGCAAACTTTTTGGACCTTTAGTCCCGGGTTGAGCCACCAACCGGGACTAAAGGGGGATACGAACGAGTGCCACCACCGCGGCACGCCACGTGTCAGACCTTTAGTCTCGGGTTGAGCCACCAACCATGACTAAAGGGGGATACAAACGGTTGCCACCACCGCGACACACCACGTGTCAGTCGCTAGATCTTTAGTCCTGGTTTTTGGCATGAATCGGGACTAATGCATCGAACCGAACCACGACTAATGCAT | |||||||||
gi|9419483|gb|BE421640.1|BE421640 HWM012cC.03r ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM012cC.0 CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): TGGGGNCCGCGGGTAATGAGCGGCATTACCCTACTAACGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCATCGGCTGCATCTCGAAAAGAATGCATGCCTTCTCTGTAAGTGGTTGTGCGTCAATCACCGTACATCCATGGATGGCTCATCTGTGTTATACGACAGTATATCAAATACAATCACGATCCTAAAAATTAGTACCGCACGGTCTAAACGAGGAAATATAGTTGCTAACCTTTTAGAATAAGTAGAAATAAAGAGGAAGAGGTTTAAGCGTGGCTCAGGCATCTCATATCGTAGTTGTGTTCGGTGAACTGAAGCGGCATCGCTCTAACACACATTTCAACAAACACCTCTAGTGCATCAAAAAAAGTGGAGAGCAAGCACCCACCCACAATCCTCCATCCAAGAAAAATGCAAGGAAGAGGGGAGAGGGGGGCTGTGCTATATATAGGCAGAGGACTTTAGTCCCGGTTTGAGACACGAACTGGGACTAAAGGTGGCGCACATGCGGGCTGCCCACCGCGTAGCCCTTTAGTCCCGGTTTGGGACACGAACCGGGACTAAAGGCTCCTTACGGGCCGGGACTAAAGCCTCGAGGGGGGGCCCGGTACCCAATTCGCCCTATAGTGAGTCGTATTACGCGCGCTCACTGGCCGTCGTTNTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTGNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCANNNNNCNNNCNNATNGNNNNNNNNGNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNAANNNNNNNNNNNNNNNNAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCG | |||||||||
gi|14528796|gb|AV836707.1|AV836707 AV836707 K. Sato unpublished cDNA library: Hordeum vulgare subsp. vulgare seedling leaves sec CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): AAAAAAAAATCTTTAATAGCAAAAAATGAAAGTAAAATTATTCACAAATTTTAAAGAATTCAAATTTGAAAACTAAATATTTAGTTGTAAGTAGAAAAAAACAAAATAAATAAAGCAAAGAACAAAACAAAAATAATGGAAAAAAATTGAAACTATATGAGAATTTATAGAGAAAATTCAACCTAAATTCAAAGTGAGGTCACAGTGCGTTTAGGCCCGTAAGCCTGCTTTAGAGAGGAGCTCGACATGGTTGGGACAACGGGGCTTATGAACGAGTCGCGGCTCCTCTCGACAAGCGAGGTGGGACTAAACTTTGGAATGCCGCCAGCCCAAGGTCTTTAGTCCCGGGTCGAGCCACGACCCGGGATTAAAGACCCTCATTTCCCGCCACTCCGCCTGCCGAAAAGGGGTCTTTAGTCCCGGGTCGTGGCACGGCCCGGGACTGAAGGTGGTCTTTAGTCCCGGTTCGGGCCACGACCCAGGA | |||||||||
gi|60288524|gb|DN186763.1|DN186763 HO28J04w HO Hordeum vulgare cDNA clone HO28J04 3-PRIME, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): GCGGAAGAAATTACACGACCTGGGACAAAAGGAAGCTGCTTGCTATCTACACATTACTCAATACTCAATACACATACCCAATACACAATACACAATACACGTTATTCATTTTAGCAACTTAAATGTAAGGTTTCATATAGCGGGACAAGAATTTGACAGGGAAAACGCCCTCCAAAACTCGGTGTCCACGGCCCTAAAAGGACAAAAGTTCAGCATTGGCAACACTTGGGGCATCACCCAACGACCTGGAAGTGAGAGTGTGCCAAACCTTGTCCATAACGTCTCATTTTACTGAAAGACCATATACCTTCATTTCCTTTTCCAGCTACGTTTGGACCACGTAGGATCCAAAATCAGGAAGGGCCCTCCCTATATTTTTGCCACGCTTAACTGTCCTTGCCTTCTTCCTGGAACGAAAACAAGGCGTAAAAGCCTCCTCCGACGGCGGCGGCGGCCATGGCCCAAACGAGGATCTGCACGGGCAGCGGCATGATGGCCGCGACTGTATAGCTTAAAACGGCCGTGAGCATGGCGGTGAGGACCCAAACGGCCACCTTGAGCCTCCGTCTGGCCGGCGAGCCGGGCGCGGC | |||||||||
gi|166071608|gb|FD523850.1|FD523850 RUS68E04w HF Hordeum vulgare subsp. vulgare cDNA clone HF14M02, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): AAACTCTAAAACCAAAAAATAAACAAAATCTGCATAAATTCTTTAGTCCCGGTCCGTGTTAAGACCCGGGACTAAAGGGCCTGCCCCTGAGGACGCTCCGAGACGCCCACGTGAAGCACCTTTGGTCCCGGCTTGAAACAGGGCCGGGACTAAAGGCCTAACCTTTAGTCCCGCCCCTTTAATCCCAGTTGGTGAACCGGGACTAAAGCCCTCAGTGTTTGTTTCTCGATGAATCGACCGCGTACCTCGGTTTAATTCTAACACAAACTAGATCTAGAACTAGTAGGTCGATTGACCAAGTGTGATGAGCTGAAAGAGATGCCCACAAAAGACCGCAAGACGATGTCGAATCGCCCATGCATCACCATGGCGCGGCCGCCAGCTGCAGCACAGCAATAGCATGGCCCTTCCTCCTCTCCTCCGCGATCTCCTCCATCTCCGTGTCCATCTCCTTGAGAGCATCCTTCAGGCTCGCCATCTTCGAC | |||||||||
gi|14528796|gb|AV836707.1|AV836707 AV836707 K. Sato unpublished cDNA library: Hordeum vulgare subsp. vulgare seedling leaves sec CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): AAAAAAAAATCTTTAATAGCAAAAAATGAAAGTAAAATTATTCACAAATTTTAAAGAATTCAAATTTGAAAACTAAATATTTAGTTGTAAGTAGAAAAAAACAAAATAAATAAAGCAAAGAACAAAACAAAAATAATGGAAAAAAATTGAAACTATATGAGAATTTATAGAGAAAATTCAACCTAAATTCAAAGTGAGGTCACAGTGCGTTTAGGCCCGTAAGCCTGCTTTAGAGAGGAGCTCGACATGGTTGGGACAACGGGGCTTATGAACGAGTCGCGGCTCCTCTCGACAAGCGAGGTGGGACTAAACTTTGGAATGCCGCCAGCCCAAGGTCTTTAGTCCCGGGTCGAGCCACGACCCGGGATTAAAGACCCTCATTTCCCGCCACTCCGCCTGCCGAAAAGGGGTCTTTAGTCCCGGGTCGTGGCACGGCCCGGGACTGAAGGTGGTCTTTAGTCCCGGTTCGGGCCACGACCCAGGA | |||||||||
gi|94349949|gb|BY861994.1|BY861994 BY861994 Etiolated seedling shoot Hordeum vulgare subsp. vulgare cDNA clone baet40a02 3', mRN CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): GATGGATAGGAGACCACTAGGCATCCTCTTACCTTCTCCTTTCCTCCCTTGTTTCTTCTTTTCCGGTGACTCTCGCCGGAGTTGTTTTCCTTCACTAGTGGGGACGGGGCCTTTAGCCCCGGCCTGTAAGGGGCTTTAGTCCCGGTTCACCAACCGGGACTAAAGGGGCGGGACTAAAGGCCTAACCTTTAGTCCCGGCCCTCTTACAATCCGAGACTAAAGGTGCTTCACGTCGGCGCCTCGTAGCGCCCCAGAGGCAGGCCCTTTAGTCTCGGTTCGTTACACGGACCGGGACAAAAGATTTTCAGATTTTGCTGGTTTTTGGGTTTTTTTTTAATGAAATTATTTTTGGGTTTT | |||||||||
gi|21190541|gb|AJ474585.1|AJ474585 AJ474585 S00008 Hordeum vulgare cDNA clone S0000800243E09F1, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): GGGACTAAAGGGGCGGGACTAAAGGCCTAACCTTTAGTCCCGGCCCTGTTACAATCCGGGACTAAAGGTGCTTCACGTGGGGCGCCTCGTAGCGCCCCGGGGGCAGGCCCTTTAGTTCCGGTTCGTTACACGGACCAGGACAAAAGATTTTCAGATTTTGCTGGGTTTTGGGTTTTTTTT | |||||||||
gi|21189799|gb|AJ473843.1|AJ473843 AJ473843 S00008 Hordeum vulgare cDNA clone S0000800103H09F1, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): GTAAGGAGCCTTTAGTCCCGGTTCGTGTCCCAAACCGGGACTAAAGGGCTACGCGGTGGGCAGCCCGCATGTGCGCCACCTTTAGTCCCCGCTCGTGTCCCAAATCGGGACTAAAGGTCTGACACGTGGCCTGCCGTAGTGGTGGCAACCGTTGGTATCCCTCTTTAGTCCCGGTTCGTGTCCCAAACCGGGACTAAAGGCCTAACACATGGCCTGCCGTAGTGGTGGCAACCGTTGGTATCCCTCTTTAGTCCCGGTTGGTGGCTCAACCCGGGACTAAAGGCCCAAACGGTTTGCATCCCGCTTCACAAAACCACAACCGAAGCAGAGTCTCTGTCGCGCCGCCCTTTCTCTGTTCTT | |||||||||
gi|30082342|gb|CB880356.1|CB880356 HM06E18w HM Hordeum vulgare subsp. vulgare cDNA clone HM06E18 3-PRIME, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): GGGATGCATTTCAATTTGGGGGCGACGTGGCCGGACCTTTANTCCCGGCCCAGAGGCAGGCCGGGACTAAAGGGTCCCGGCCAAAGGCCCGTTTCCCACTAGTGCCTTAACGGCTGGCCACATGACCTGGACAACATCCAATGCACAGGATTCAACTAACATGCTAACTAATTCCTGGATTGACTCAGCTAACTAACTCAACGATTTGGCTAATATCTAGACCACTAACATGCAATGCATGTACTAATTACTCATACTACTCGGTCATACACACATGCATAGACTGGCTAGTACTCTCACTGTGAGCACACATGCAAGTGCACAAGTCACGTGTCAAGATTATTTTCAATATTTTCCCTCCTAATCTTGACACCTTGACTCATCAAACTCTCCATGGATGACACCTTGGCGGTGCCGAGCTCCACTCGAAATCGTCGCTGACGTGGTCGCAGCAACACAAAGACAGCCGCCAATGCCATCTTGTCACGCTGATTCGATGAGAGTCACACCTCCTACATCTTCACCACGAGCATGCCACGCGACACACTTGTTGTCTCATATTCGCCGTCGGTGCCGCAACTCGCAGATGAGTCGCCTCCATCTTCGCCACCGGTGCCGCAACTCACCGGTGACTTGCCTCCATCTT | |||||||||
gi|60289700|gb|DN187939.1|DN187939 HO24I08w HO Hordeum vulgare cDNA clone HO24I08 3-PRIME, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): GAGAATTGGGACGACGTGGCTGGGCCTTTAGTCCCAGCCCAGAGACAGGCCGGGACTAAAGGGTCCCGGCCAAAGGCCCGTTTTCCACTAGTGATAGTGACAAAAAATGAGTAGTTTACGTTACAAGTTCCCATTTTGCAACTAACTAAAATATTATCTTACACTATGGTTGAATCAACGGAAGTGTTTTCATATCACCAGATAGTTAACGTCGTGAGTGATCCAACTTTTGTCTGAATATTTAAGTTACAATCTAGTAGTACTGGTGTACATGAAGACAAAGCTGCACACAGATGGCAGATCTTCTTAATGTAATACAGATGGGCGTAACTCTTAACAGCAGTAAACAAAGTGAAACAGTCTGATTCCAAGTTCACACAACAAGAATAAGGAGAATAGTTTCCCGCAGTTGTATCTAAGGGGAACAGTTTACCTCCTGTCATTCTTTCATTTCTTCATGTAAAAAGTAACCTTGGACGGTTGGGATGGAGATTTGCTTCCTTCCTTATGGAAACTTTTGCAGCCTCTAAATTGTACCAAGAGTAGCCAGTACTTCCCAATACAGAGATCCACAGCTTAAGCCTTTCAAGCTTTGGCAATGCCCCTTTGTTCAACCGAAAGGTCCCCGGACCTCCAAAAGGGCTATAAAAGAACTGCTTCAAACATCGGAATCCTCT | |||||||||
gi|9419483|gb|BE421640.1|BE421640 HWM012cC.03r ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM012cC.0 CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): TGGGGNCCGCGGGTAATGAGCGGCATTACCCTACTAACGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCATCGGCTGCATCTCGAAAAGAATGCATGCCTTCTCTGTAAGTGGTTGTGCGTCAATCACCGTACATCCATGGATGGCTCATCTGTGTTATACGACAGTATATCAAATACAATCACGATCCTAAAAATTAGTACCGCACGGTCTAAACGAGGAAATATAGTTGCTAACCTTTTAGAATAAGTAGAAATAAAGAGGAAGAGGTTTAAGCGTGGCTCAGGCATCTCATATCGTAGTTGTGTTCGGTGAACTGAAGCGGCATCGCTCTAACACACATTTCAACAAACACCTCTAGTGCATCAAAAAAAGTGGAGAGCAAGCACCCACCCACAATCCTCCATCCAAGAAAAATGCAAGGAAGAGGGGAGAGGGGGGCTGTGCTATATATAGGCAGAGGACTTTAGTCCCGGTTTGAGACACGAACTGGGACTAAAGGTGGCGCACATGCGGGCTGCCCACCGCGTAGCCCTTTAGTCCCGGTTTGGGACACGAACCGGGACTAAAGGCTCCTTACGGGCCGGGACTAAAGCCTCGAGGGGGGGCCCGGTACCCAATTCGCCCTATAGTGAGTCGTATTACGCGCGCTCACTGGCCGTCGTTNTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTGNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCANNNNNCNNNCNNATNGNNNNNNNNGNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNAANNNNNNNNNNNNNNNNAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCG | |||||||||
gi|24237153|gb|BU986207.1|BU986207 HF11A03r HF Hordeum vulgare subsp. vulgare cDNA clone HF11A03 5-PRIME, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): GGGTCATGGCTCCACCCGGGACTAAAGGGTGTCTTTAGTCCCGGTTCGAGCCCCGAACCGGGACCAAAGATCCTACTATATAAGCGGGAGTTGGAAATTTCCAACCCAAATCGCCATTTCTCTTCTTCCTCGGACTCTCTCCTGCCTGGCGCAGCACAAACTCGCGCAAGGCCGCCAGGCTGCCCGCCGTCCTCCTCGCCGCTGCTTGCCGTCCTCCTCGTCGTCGCCGTCGTCCTCCTCGCTGCCGCCGTCCTCCTTGCCGCCGCCATCCTCCTCGCCGCCGCCTGCCGTCGTCGACGCCCTCCCTTCCCACTCCAGCCGGTAAGCCCCCCGCCCACTCCTCGCCAACGCTCCTGCCGGTAG | |||||||||
gi|57829832|gb|CX631045.1|CX631045 GNW002I15r GNW Hordeum vulgare cDNA clone GNW002I15 5-PRIME, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): GGGGGGCCTTTACCCCGGTTAAGATCGGCTTTAGTCCCGGATCATCAACCGAGACTAAAGAGTGAGGACTAAAGGGTTGGCCACACCCGGGGACTAGAGTCCCTCCACGTGACAGCGAGTGTGTGGCGGGAGGTGGAGGACCTTTAGCTTCGGTTGGTGTCACCAACCGGGACTAAAGAGTTTGCATTTTTTTGTTTGGGTTTAGGGTTTAT | |||||||||
gi|21189799|gb|AJ473843.1|AJ473843 AJ473843 S00008 Hordeum vulgare cDNA clone S0000800103H09F1, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): GTAAGGAGCCTTTAGTCCCGGTTCGTGTCCCAAACCGGGACTAAAGGGCTACGCGGTGGGCAGCCCGCATGTGCGCCACCTTTAGTCCCCGCTCGTGTCCCAAATCGGGACTAAAGGTCTGACACGTGGCCTGCCGTAGTGGTGGCAACCGTTGGTATCCCTCTTTAGTCCCGGTTCGTGTCCCAAACCGGGACTAAAGGCCTAACACATGGCCTGCCGTAGTGGTGGCAACCGTTGGTATCCCTCTTTAGTCCCGGTTGGTGGCTCAACCCGGGACTAAAGGCCCAAACGGTTTGCATCCCGCTTCACAAAACCACAACCGAAGCAGAGTCTCTGTCGCGCCGCCCTTTCTCTGTTCTT | |||||||||
gi|166072435|gb|FD523532.1|FD523532 RUS64F08w HF Hordeum vulgare subsp. vulgare cDNA clone HF11A03, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): CGGCGAGGAGGATGGCGGCGGCAAGGAGGACGGCGGCAGCGAGGAGGACGACGGCGACGACGAGGAGGACGGCAAGCAGCGGCGAGGAGGACGGCGGGCAGCCTGGCGGCCTTGCGCGAGTTTGTGCTGCGCCAGGCAGGAGAGAGTCCGAGGAAGAAGAGAAATGGCGATTTGGGTTGGAAATTTCCAACTCCCGCTTATATAGTAGGATCTTTGGTCCCGGTTCGGGGCTCGAACCGGGACTAAAG | |||||||||
gi|21189799|gb|AJ473843.1|AJ473843 AJ473843 S00008 Hordeum vulgare cDNA clone S0000800103H09F1, mRNA sequence CCTTTAGTCCCGGTTCGTGTC EST sequence (targeted fragment marked with yellow): GTAAGGAGCCTTTAGTCCCGGTTCGTGTCCCAAACCGGGACTAAAGGGCTACGCGGTGGGCAGCCCGCATGTGCGCCACCTTTAGTCCCCGCTCGTGTCCCAAATCGGGACTAAAGGTCTGACACGTGGCCTGCCGTAGTGGTGGCAACCGTTGGTATCCCTCTTTAGTCCCGGTTCGTGTCCCAAACCGGGACTAAAGGCCTAACACATGGCCTGCCGTAGTGGTGGCAACCGTTGGTATCCCTCTTTAGTCCCGGTTGGTGGCTCAACCCGGGACTAAAGGCCCAAACGGTTTGCATCCCGCTTCACAAAACCACAACCGAAGCAGAGTCTCTGTCGCGCCGCCCTTTCTCTGTTCTT | |||||||||