| mature miRNA: CCTTTAGTCCCGGTTGGAGCG species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|40955559|gb|CK569985.1|CK569985 HO15A23w HO Hordeum vulgare cDNA clone HO15A23 3-PRIME, mRNA sequence CCTTTAGTCCCGGTTGGAGCG EST sequence (targeted fragment marked with yellow): GATCGTACGAGAAATTTTATTATATATTCATCAACGTGTACAATATGTAGTAGCTAAAATATGTTTGAAATGAAAAAGAGTTAAATGGAATACGCAAAATCAAAATGAAAAATAAACTATAAACCCTAAACCCAAACAAAAAAATGCAAACTTTTTAGTCCCGGTTGATGACACCAACCGAAGCTAAAGATCCTCCACCTCCCGCCACACACTCGCTGTCACGTGGAGGGACTCTAGTCCCCGGGTGTGGCCAACCCTTTAGTCCTCACTCTTTAGTCTCGGTTGATGATCCGGGACTAAAGACCGTTTCTAACCGGGACTAAAGGCCCATTCTCCACTAGTGGGCATTTGCATCGATTGATGCACACAGCCATTCTATTGTATAATTTTTAAGGTATTACATAAATAGAAAAAAAAAACACGACCACGAATAATACATTTGTACATAAGACTCTCGTGTTCACTAAACCTATTGTTATGCTACCATAGAAACCTCTTGAATAAAGCTCGTACGTCCATCTCCAAATGCTTGCATCCAAAGTCTCGAAACTTCAAGCCTCCACATGCTGATGTAAGGAGTACGTACGGATTCGGTGCGTAGCTATGTAGATAACCTTGTCATGTCAGAAATATGCTATTCAAAAACGCATATCCAGCAACCACCCCTCCTTCATTTAGTGAAGCTGCTTTGGTCCTCAAC | |||||||||
gi|60277794|gb|DN182537.1|DN182537 HO20G01S HO Hordeum vulgare cDNA clone HO20G01 5-PRIME, mRNA sequence CCTTTAGTCCCGGTTGGAGCG EST sequence (targeted fragment marked with yellow): GCACGAGGCTCATTCTCCTCCACCTCTTGAAGCCATTTCTTGAAATAGGTAAGAAAACGCGACACCATGGCACTGTCATTCGTGTACACGACATTGAGTTCGGTCGTGCCATGTGCGAGCACCTCTCTGTAGCGAGTGGTTGGCATGGTGGAAGAAGTGAAGGGAAGAAGAGAGGGGAAGAAGAGAGGGGAAGAAGAGAGGAGAGCGAGAGAGAAGAAGAAACAGAGAAATGGCGAATCTTCTTTGGTTCACGCTTTTCATCGATCGAAACGATGCGGGAGGCAAACTTTTTGGACCTTTAGTCCCGGGTTGAGCCACCAACCGGGACTAAAGGGGGATACGAACGAGTGCCACCACCGCGGCACGCCACGTGTCAGACCTTTAGTCTCGGGTTGAGCCACCAACCATGACTAAAGGGGGATACAAACGGTTGCCACCACCGCGACACACCACGTGTCAGTCGCTAGATCTTTAGTCCTGGTTTTTGGCATGAATCGGGACTAATGCATCGAACCGAACCACGACTAATGCAT | |||||||||
gi|21150068|gb|BJ471565.1|BJ471565 BJ471565 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three lea CCTTTAGTCCCGGTTGG-AGCG EST sequence (targeted fragment marked with yellow): GGCTAGGCTTTAGTCCCGGTTTACTAGGAACCTCTAGTCCCGGTTGGTGTTACCAACCGGGACTAAAGGGTGGTATCAGGGTTTTGTCAGGCTGGGGCCCATGCGAGGGCAATTAGTCCCGGTTGGTAAATACAAATCGGGACTAGAGATAGATCTTCGGTCCCGGTTTATATCACCAACCGGGACTAAAATTATCACTATAAATAGTGCTTCGTCCAGCCCGAGCCCAAGTTCTCTATTTTCTCCTTTCTCTTCTGTGTTCTCTTCCCTTGCTCGAGTTCATCCTCAATTTCTTCCTAGATTTGTGAAGATTTGAGGCACCCCATCCATCCAAGTGTTCACAAAGGTTAGCAACTTTGTCCTTTCATCTCTCATCCCCGTCCTAACCACCATCGATCGCCCTCATTGTCTCGTCGCTGGCACCACCTTGGTGATCCTCTTGTTCTTATCTTTTTATTCCACAAAAATCTTCTTTGGATGATTTAGATAGTTTTCTTACTTGTATGATTGTTTGTTATACATAGTGCCATGGTCTTGATAT | |||||||||
gi|166072613|gb|FD522424.1|FD522424 RUS56A04w HF Hordeum vulgare subsp. vulgare cDNA clone HF02P09, mRNA sequence CCTTTAGTCCCGGTTGGAGCG EST sequence (targeted fragment marked with yellow): AAACCATTCAAATTTAAAAAATAATTGCACAAACAGAAACTAGACAAAATTTTGAATCTAATGCAAAAAAGAATCACTCAAAAAAATTAAATATCCTAAAAGATATAAGCAATTTAAAACAGAAACTACAAACAGAAATAAAATTTAAAAACAGGAAAAAATAAAAATACAAAACCCCTTTAGTCCCGGTTCGTGGTCCCGGTTCAAAACACGAACCAGGACTAAAGCCTCCAAACCATTTAGTTCCGGTTCCAGACACGAACCGGGACTAAAGGTCCCTCTTGAACCGGGACTAATGACCGACCGGCACCCTTGCCGTTCGAACCGGGACTAATGCTAACATTAGTCTCGGTTCGTAATGAAACCGAAACTAATGTGTAAATTGAGCTGGGACGGAAGCCCCTTTTTCTACTAGTGGCACTTCTACAAACACGTGGCTGTGGACCACATGTCATCCTCACACTAGAAATCAGGAAACAAGTACTAACTGCAGACACCGGACATTTGTCGTACAAAATACTTCCTTTGTACCTGAATAATTGCAGTTG | |||||||||
gi|24238382|gb|BU987436.1|BU987436 HF14M02r HF Hordeum vulgare subsp. vulgare cDNA clone HF14M02 5-PRIME, mRNA sequence CCTTTAGTCCCGGTTGGAGCG EST sequence (targeted fragment marked with yellow): CGGCACGAGGCTGCGGATAAGGTGAGGGCCCTCGAGTCGAAGATGGCGAGCCTGAAGGATGCTCTCAAGGAGATGGACACGGAGATGGAGGAGATCGCGGAGGAGAGGAGGAAGGGCCATGCTATTGCTGTGCTGCAGCTGGCGGCCGCGCCATGGTGATGCATGGGCGATTCGACATCGTCTTGCGGTCTTTTGTGGGCATCTCTTTCAGCTCATCACACTTGGTCAATCGACCTACTAGTTCTAGATCTAGTTTGTGTTAGAATTAAACCGAGGTACGCGGTCGATTCATCGAGAAACAAACACTGAGGGCTTTAGTCCCGGTTCACCAACTGGGATTAAAGGGGCGGGACTAAAGGTTAGGCCTTTAGTCCCGGCCCTGTTTCAAGCCGGGACCAAAGGTGCTTCACGTGGGCGTCTCGGAGCGTCCTCAGGGGCAGGCCCTTTAGTCCCGGGTCTTAACACGGACCGGGACTAAAGAATTTATGCAGATTTTGTTTATTTTTTGGTTTTAGAGTTTTAAGATTTAGGTGTTCGGGAGATT | |||||||||
gi|166072435|gb|FD523532.1|FD523532 RUS64F08w HF Hordeum vulgare subsp. vulgare cDNA clone HF11A03, mRNA sequence CCTTTAGTCCCGGTTGGAGCG EST sequence (targeted fragment marked with yellow): CGGCGAGGAGGATGGCGGCGGCAAGGAGGACGGCGGCAGCGAGGAGGACGACGGCGACGACGAGGAGGACGGCAAGCAGCGGCGAGGAGGACGGCGGGCAGCCTGGCGGCCTTGCGCGAGTTTGTGCTGCGCCAGGCAGGAGAGAGTCCGAGGAAGAAGAGAAATGGCGATTTGGGTTGGAAATTTCCAACTCCCGCTTATATAGTAGGATCTTTGGTCCCGGTTCGGGGCTCGAACCGGGACTAAAG | |||||||||
gi|21189799|gb|AJ473843.1|AJ473843 AJ473843 S00008 Hordeum vulgare cDNA clone S0000800103H09F1, mRNA sequence CCTTTAGTCCCGGTTGGAGCG EST sequence (targeted fragment marked with yellow): GTAAGGAGCCTTTAGTCCCGGTTCGTGTCCCAAACCGGGACTAAAGGGCTACGCGGTGGGCAGCCCGCATGTGCGCCACCTTTAGTCCCCGCTCGTGTCCCAAATCGGGACTAAAGGTCTGACACGTGGCCTGCCGTAGTGGTGGCAACCGTTGGTATCCCTCTTTAGTCCCGGTTCGTGTCCCAAACCGGGACTAAAGGCCTAACACATGGCCTGCCGTAGTGGTGGCAACCGTTGGTATCCCTCTTTAGTCCCGGTTGGTGGCTCAACCCGGGACTAAAGGCCCAAACGGTTTGCATCCCGCTTCACAAAACCACAACCGAAGCAGAGTCTCTGTCGCGCCGCCCTTTCTCTGTTCTT | |||||||||
gi|24237153|gb|BU986207.1|BU986207 HF11A03r HF Hordeum vulgare subsp. vulgare cDNA clone HF11A03 5-PRIME, mRNA sequence CCTTTAGTCCCGGTTGGAGCG EST sequence (targeted fragment marked with yellow): GGGTCATGGCTCCACCCGGGACTAAAGGGTGTCTTTAGTCCCGGTTCGAGCCCCGAACCGGGACCAAAGATCCTACTATATAAGCGGGAGTTGGAAATTTCCAACCCAAATCGCCATTTCTCTTCTTCCTCGGACTCTCTCCTGCCTGGCGCAGCACAAACTCGCGCAAGGCCGCCAGGCTGCCCGCCGTCCTCCTCGCCGCTGCTTGCCGTCCTCCTCGTCGTCGCCGTCGTCCTCCTCGCTGCCGCCGTCCTCCTTGCCGCCGCCATCCTCCTCGCCGCCGCCTGCCGTCGTCGACGCCCTCCCTTCCCACTCCAGCCGGTAAGCCCCCCGCCCACTCCTCGCCAACGCTCCTGCCGGTAG | |||||||||
gi|94349949|gb|BY861994.1|BY861994 BY861994 Etiolated seedling shoot Hordeum vulgare subsp. vulgare cDNA clone baet40a02 3', mRN CCTTTAGTCCCGGTTGGAGCG EST sequence (targeted fragment marked with yellow): GATGGATAGGAGACCACTAGGCATCCTCTTACCTTCTCCTTTCCTCCCTTGTTTCTTCTTTTCCGGTGACTCTCGCCGGAGTTGTTTTCCTTCACTAGTGGGGACGGGGCCTTTAGCCCCGGCCTGTAAGGGGCTTTAGTCCCGGTTCACCAACCGGGACTAAAGGGGCGGGACTAAAGGCCTAACCTTTAGTCCCGGCCCTCTTACAATCCGAGACTAAAGGTGCTTCACGTCGGCGCCTCGTAGCGCCCCAGAGGCAGGCCCTTTAGTCTCGGTTCGTTACACGGACCGGGACAAAAGATTTTCAGATTTTGCTGGTTTTTGGGTTTTTTTTTAATGAAATTATTTTTGGGTTTT | |||||||||
gi|30053580|gb|CB859022.1|CB859022 HI09A16w HI Hordeum vulgare subsp. vulgare cDNA clone HI09A16 3-PRIME, mRNA sequence CCTTTAGTCCCGGTTGGAGCG EST sequence (targeted fragment marked with yellow): ACACCAACACCAAGAAGAAGAAGAGCAAGCAGAGCATCACGTAGCCACAGCGACACCGAGAGGTCGAGACCCATTGAAGCGCCTTCCGCCACCTAGCACAGCACACCACCACCATCACATGGCGCGCTGGGCCATTGCCATCCACGGCGGCGCGGGCGTGGACCCGAACCTGCCGGAGCACAGGCAGGAGGAGGCCAAGCGGGTGCTTGCCCGGTGCCTGCAGGTCGGCGTCGACCTGCTGCGGTCCGGCGCCACCGCGCTGGACGTGGTGGAGGCCGTGGTGCGGGAGCTGGAGACGGACCCCTGCTTCAACTCTGGCCGCGGCTCCGCGCTGACCCGCGCCGGCACCGTCGAGATGGAGGCCAGCATCATGGACGGCCGCGGCCGCCGCTGCGGCGCCGTCTCCGGCGTCTCCACCGTCCGCAACCCCGTCTCCCTCGCCCGCCGCGTCATGGACAAGTCCCCGCACTCCTACCTCGCCTTCCAGGGCGCCGAGGATTTCGCGCGCCAGCAGGGACTGGAGGTGGTGGACAACAGCTACTTCATCACGGAGGAGAACATCGGCATGCTCAAGCTCGCCAAGGAGGGCAACAGCATCCTCTTCGACTACCGCATCCCGCTGGTCGGGGCCG | |||||||||
gi|161476416|gb|EX584278.1|EX584278 HDP04O20T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP04O20, mRNA sequence CCTTTAGTCCCGGTTGGAGCG EST sequence (targeted fragment marked with yellow): ACTTACAACTAATTTTTTGTTTTTTGGCACCAACCGGGACCAAAGGCCGTGTGCTGGCTCGGTGCGGTGCTATGTTTAATTATTTTTTCTAGTTTCTTTGCTTTATTTTTTGTTTCTAATTACTTATTTATTTTCTTTTATGATAATTCTTTTAGTCCGGACTTCTTGTTTTATTAAAGTTTATTTTATTTTATTTTATTTCTACTTACATCATTAATTTTCATCCCTTTGTGACTTCATATGTTATTTTTCATGCATTTACTGATTATTTTGAGCTATAAGACCCTGAAATTGAAAAGCATTTCAAATGAACTCTAAAAAGGTTGGAATTTGGCATGGTATCATCATTTCATCCACATAGCATATGCAAGAAAGTTGAGAGGGTTACGACAAAAACTGGATGCACTTCGTGTACAAAACGGACAATCTCTTTCGAAGTATCAGGATTTCATACGGAAACTTTTCTGTTACAACAGGCATTTCAAATGAACTACGAAAAGGTTGAAAGTTGGCATGGTATCATCAATAATAG | |||||||||