| mature miRNA: CGATTCCGTAGTCCATGAGCG species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|217053092|gb|GH219415.1|GH219415 HVSMEh0084N15f2 Hordeum vulgare 5-45 DAP spike cDNA library HVSMEh (HVcDNA0009)2 Hordeum vul CGATTCCGTAGTCCATGAGCG EST sequence (targeted fragment marked with yellow): GCACGCACAAACACACATCAAACATCATGGCGGGTACCGTTGACGTCACGACGGAGCCGGAGCTGCTGCTGGAGCGCAGCCGGGCGATCACCGTGCATGGGGGCGACAAAGCGGGCCGCGCCGTCGTCAGGATCGTCGGCAAGTACTTCCCCGCGCGCGCGCTGGGCGGGCTGGCGGATGATGCTCTGAAGGCGCACCTGCGGAAGCGGGTGCTCCCGGAGGTCGGGGAGCGGGAGTTCGTGGTCGTGTACATGCACTCCCTCGTCGACCGCGGCGACAACTTCCCGGGCCTGGGCGCCATCCGCGCGGCGTACGAGTGCCTGCCGGCCGTGGCCAAGGAGAGGCTGCGCGCCGTCTACTTCGTGCACCCCGGCATCCAGGCCCGGCTCTTCTTCGCGACCTTCGGCCGGTTCCTCTTCAGCTCCGGGTTGTACGAGAAGCTGAGGTACATGAGCAGGCTCGAGTACCTGTGGGCGCACATGGACANAGGGGAGCTCGAGGTCCCGGAGTGCGCACGCCAGCACGACGACGAGCTCGAGCGCCGCCCGCTCATGGACTACGGAATC | |||||||||
gi|94360105|gb|BY843012.1|BY843012 BY843012 Etiolated seedling shoot Hordeum vulgare subsp. vulgare cDNA clone baet76c06 5', mRN CGATTCCGTAGTCCATGAGCG EST sequence (targeted fragment marked with yellow): TGGAAGTCGCGTCGAACCCTTCCTACCCACCCATACCCTCGCCGCAACGCCGACAAGCCCTAGCTAGGGTTTTGCTCTTTCCCTACCCCCGTCCCCGCGGTCGCCGCCTCCCCCGCCGTCGGTGCTGCCACGCTCGGGCTCACGCGCGATGACGTCCTGCGTCTCCTCGACCCGCTGTCCCGCGACCAGCTCGCCGATATCGCCGCCGCCGCGGCGCTCGCCTCCGGGGTTGCGCTCGATGCCGTGCGCGCCGCCGCCGACCGCGACCCGGCCCTGCGCAAGCTCTTCGTCCGGGGCCTCGGCTGGGAGACCAACTCCGACTCGCTCCGCGCCATCTTCTCCGCCTACGGCGACCTCGAGGAGGCCGTGGTCATCAGCGACAAGACCACCGGCCGCTCCAGGGCTACGGATTCGTTACCTTCG | |||||||||
gi|16328424|gb|BG414297.2|BG414297 HVSMEk0002F21f Hordeum vulgare testa/pericarp EST library HVcDNA0013 (normal) Hordeum vulgare CGATTCCGTAGTCCATGAGCG EST sequence (targeted fragment marked with yellow): GCCGTCGTCAGGATCGTCGGCAAGTACTTCCCCGCGCGCGCGCTGGGCGGGCTGGCGGAGGAAGCGCTGAAAGCGCACCTGCGGAAGCGGGTGCTCCCGGGAGTCGGGGAGCGGGAGTTCGTGGTCGTGTACATGCACTCCCTCGTCGACCGCGGCGACAACTTCCCGGGCCTGGGCGCCATCCGCGCGGCGTACGAGTGCCTGCCGGCCGTGGCCAAGGAGAGGCTGCGCGCCGTCTACTTCGTGCACCCCGGCATCCAGGCCCGGCTCTTCTTCGCGACCTTCGGCCGGTTCCTCTTCAGCTCCGGGTTGTACGAGAAGCTGAGGTACATGAGCAGGCTCGAGTACCTGTGGGCGCACATGGACAAGGGGGAGCTCGAGGTCCCGGAGTGCGCACGCCAGCACGACGACGAGCTCGAGCGCCGCCCGCTCATGGACTACGGAATCGAGGCCGCCGACCGCTGTTCCGTGTTCGACCCCGCGTCCATGGACACACCGGCGTCCCTACGCTCGCTGCGGTGCTCCTAGCGTGCGGCACCAAGTGATAGCCCCCAGCTGAGTCCGGTTGTTAATTAGCAGGCCCTTTGATGTTTGATGGAAATCTGTACATATTAGGAATAGTGGAAGTTTTACTGTAAAATACAATTAAATAGTCCGAATAATTCAAAATTAATTGCCGGCCCGGATATAATAAATACACTGGTTACTTGGAAAAGGGAAAAATAACTTTACCCTTTTAGGGGGGTGCCCGGTTCCACAATTTGGCCTTTTAGGGGGGTCGGTTTAAACAATTGACTGGCCGGTTGTTTTACAATTTCTTTTACGGGAAGAACCCTATGTTGTATCCCCACTTTAATTCGGCTTGGATGAACAATTCAACCTTTTGCAAGTATGATTTT | |||||||||
gi|13187209|gb|BE194253.2|BE194253 HVSMEh0084N15f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009 (5 to 45 DAP) Hordeum vu CGATTCCGTAGTCCATGAGCG EST sequence (targeted fragment marked with yellow): GCACGCACAAACACACATCAAACATCATGGCGGGTACCGTTGACGTCACGACGGAGCCGGAGCTGCTGCTGGAGCGCAGCCGGGCGATCACCGTGCATGGGGGCGACAAAGCGGGCCGCGCCGTCGTCAGGATCGTCGGCAAGTACTTCCCCGCGCGCGCGCTGGGCGGGCTGGCGGAGGAGGCGCTGAAGGCGCACCTGCGGAAGCGGGTGCTCCCGGAGGTCGGGGAGCGGGAGTTCGTGGTCGTGTACATGCACTCCCTCGTCGACCGCGGCGACAACTTCCCGGGCCTGTGCGCCATCCGCGCGGCGTACGAGTGCCTGCCGGCCGTGGCCAAAGAGAGGCTGCGCGCCGTCTACTTCGTGCACCCCGGCATCCAGGCCCGGCTCTTCTTCGCGACCTTCGGCCAGTTCCTCTTCAGCTCCGGGTTGTACGAGAAGCTGAAGTACATGAGCAGGCTCGAGTAACTGTGGGCGCACATGGACAAAGGGGAGCTCGAGGTCCCGGAGTGCGCACGCCAGCACGACGACGAGCTCGAGCGCCGCCCGCTCATGGACTACGGAAT | |||||||||