| mature miRNA: CTGACAGAAGAGAGTGAGCAC species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161458290|gb|EX598089.1|EX598089 HDP11D21T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP11D21, mRNA sequence CTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): ACAGCACGCACCAGGTTAACTTCGGCGGCGCCACGTCGTCATACTCCAACGAAGGCCGGCGCTTCCCCTTCCTCCACGAAGGAGACCAGATGAGCTTCAGCACCGGCGCGCCAGCACTCGAGATCCCCGTGTGCCAGCCTCTCCTCAAGGCCGTCGCCCCGCTGCCGCCGCCGCCCGAGAGCAGCAGCAGCAACAAGATGTTCTCCGATGGACAGTTGACGCACGTGCTCGACTCCGACTGTGCTCTCTCTCTTCTGTCATCCCCGGCCAACGACAACGAGATGAACTGCCACGGGATCTTCCACGTCGGCGCCGATGGCTCCTCCGAGGGCACGTCGCCGTCCCTCCCGTTCTCATGGCAGTAGGAGTCTCGAGTGAAGATCAGAGGCTGTTCTTGGGTTCTTTTGGTGATCAGTAGGCAGTAGCTAGCTGTGCCCCTTTTAGTGATCAGGCCTACGTCCCGTTCTTTCTGTGTTTATTCTCTCTCCTTTTCACGTTTCTATGTCTTGGACTTGATCTCTCGCTATCAGAATGAATAACTTTGCATGATTC | |||||||||
gi|9418682|gb|BE420839.1|BE420839 HWM003.A12 ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM003.A12, CTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GTTACGGATTGCCTCGCACGTAGTTCTACATAAAGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGTCATCGACCAACATAGCTCAGTTGCTGCTTTGTTAACGAATGAATGCTTATGGTTTTGTTATTAGTAACAAAAATAAGTTAGTTGCATGAACTGCCTGTCCTGATTTTGCTCTCTTCTGTCAGGATGGGCGCATTGACTATGGAGAATTTGTTGCCATGATGACCAAAGGCAACATGGGGGTCGGGCGAAGAACAATGAGAAACAGCCTGAATATCAGCATGAGAGACGCACCTGGTGCAATCTAGACTTCCACGATGTATATACAGCTTGTGGCTTTAGCTTCTTCCCGTCTTCCCGCTCCATCGAAGCCTTCCTGCAAATTATCGAATCTTGTAAAATGCCTGTGTGGATGTGTGTTTCTGTGGATTCTGATTTAGCTCGTCAATTGATTCGACGGAACGCATGCTAAGCTGGGTTGAAATGATCTCACACGTTGCTGCTGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAACCAANCNAGAGGGAAAACACCACACCCCACAACACCACACAAACACAACCAACCACCCACCAACAACCACCCCCCCCCAAAAAAAAAACCCACAACACCCCCACCCAACCCACAAACAAAACACCACAACCACACCACCACCTTTTCACTTTTATTTTTTCCATATAAATTATTTTTAATATAATACCCCCCCCCC | |||||||||
gi|94359779|gb|BY873618.1|BY873618 BY873618 Germination shoots Hordeum vulgare subsp. vulgare cDNA clone bast72a09 3', mRNA sequ CTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GATCAAGCCCGTCGGCGAGGCCGGCGGCATCGGCGGCGGACGCAAGGAGCTGGACGAGTTCGTGGCCGGCGCCTTCGACGGGCCATTCAGGGAGGCCGTGTCCATGCTCAGCAAGCGCCGCACCCACCTGCTAGAGATGAACGGCTTCTAATCTAGCCAAACCTGAATCTAGCTAGTGTGCGCTATGGCGATGGCAATGGCCACCATCTACGAGCAGAAATGATTGCTCTCTTCTGTCGGTCGGATTCAGCTCTGCTCATTTCTTCGCTGCTGCCTTGGCATCCTTGTAATCGCCACCATCATTTCGTTGCGGTGACCTCATATGATCGATTAATGGATGAATGAAATGAAGTGATACGAGATTACCACATGCCACATTACATCAATAAAGTGCTGTTTATACCATTGTTCTCC | |||||||||
gi|16315827|gb|BF258419.2|BF258419 HVSMEf0015K19f Hordeum vulgare seedling root EST library HVcDNA0007 (Etiolated and unstressed CTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GGCACGAGGGAAATCAAAACACAGCTCCGGGAAAGTCACTTCATCATCATCATCCGTGGTCAAACAACTAGGAGAATCCTTCTTCGGGTGATATTTTCCTTCAAGGTTCACTAGGAGGGACCGGTTTTTCCAGTACCACAACTTCTCAAGGAGAATGGTTCACGGAAGTTAGTGACTCTAGCTGTGCTCTCTCTCTTCTGTCAAATGCAACCATGGGGCTCCAAAAACCGATCTTCGGCTCTTGGTGTTAACGACATGATGAACACCTAACCACTGCCCCATGGCACATTCGTAAACCCATATTTGCAAACCTCGGAGCCTGCTGATGCTCAACATTTCGGCACGCTTGAGTTGCCTCAGCAAAACAGCGTGCTACACATGGAACTTGAGCAGCACTCCAGATCATTTGACACATCGGCACAGTATGTTCACTGGTCACTCTAAGTGCTTACCGTGACTCTTTCCCATCTTGATGTCCTGTTGTCGTGCCAGTTCTTATGTTGTATGCGCACTTTACCGAGCATCAAATTGTATGTGTTAACGGAATAAACCCGAACTATCCACTGTCTTTGCCATTGCTGTTGCCTGAGTCATCAAGTCAGGCATTACTAGACGATGTACTGGTATTTATATATGATCAATGATATTCGTGACTTCATGAGAGAATATAAACTCGAAGTGGTGATGAGCAGTCGAGTCCCATAGGTTCTCACCCGGTGGGGAACAAGAAAGCGTACCAATTCCGCCCTTGGAAAACAGGGTACATTTAATGGCCGTATACACAACGCCGGAATGAGACAACCTGGGTTCCCAACTTATTACCTTGGTGACATGAGGCTTTTGCAATTGTGGAAATACGAAAAGGCCAGACGATGGCCTTCCCAACATTCGCACATGAAGGG | |||||||||
gi|16297473|gb|BI953092.1|BI953092 HVSMEm0009O23f Hordeum vulgare green seedling EST library HVcDNA0014 (Blumeria infected) Hord CTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CCCCATCTTCCTCCCCGCAACTCGCTGCTCCTCCCAAACCCGAAGCTCAGTCCCGTGGCCACGCAGAACAAAATGCANCGAGCAATTCAAGCTATCGGATCACATGGCAGTGTACTCAAATCTGCTGTCCTCCAACACATCAGTGTTGTGAAGCCTGCTATGCTGCCCGCTGTGTTCCCNCNCTTATGTCAGTATCATCTGCTCAAATAGAGGAGAGCGGGTTTGAGAGCAGCACTGTTGCAGATATTTTGAAGTCCAAAGGGAAGAGTGCTGATGGATCATGGCTCTGGTGCACCACAGATGATAGTGTCTATGATGCTGTCAAATCGATGACACAGCACAACGTGGGAGCTTTGGTGGTTGTTAAACCTGNGGAAGATAAATCAATTGCTGGCATCGTCACAGAGAGAGATTATCTCCGGAAAATCATCGTGCAGGGTCGATCCTCCAAGTCAACCAAAGTTGGAGATATCATGACTGAAGAGAACAAGCTGATCACGGTGAAGCCTGACACCAGAGTCCTGCAAGCAATGCAGCTGATGACAGACAAGCGTATCAGGCACATTTCCGTGATCACCGGCGCACANATGATGGGGATGGTCTCGATTGGTGACGTCGTGCGCGCAGTGGTCACCGAGCACAAGGAGGAGCTGAACCGGCTCAACGCCTTCATCCAAGGCGGGTACTAAGGGTTCGCAAGCCCCTCCCGGCTGCGTTTGCAAGACGTCCCTTTGAGTGACCTCTACATTACCAACCAGGGTAATGATGACAAAATAGGCCTGGTTTTTCGTAAACAGTGGCTGGGGACTTGAATTTGCGGGGGTTGATAGTTCCCGGTTTTAGGGTTTTTTCGGTGCGACCGCCAACGGGGCTGTTTGGGGCGTTTAACATTCGGGGGGGGGTGACCGCAAAATCTTGGGTTGGCAGGAAGAATGTTGTTAGCACACGTTTTCTCCGCCGCAGCTAGAAGGGAAGAGGCCCGCAAGATTGTTTGAGCCAAGGAAGAGAAGTCCGCCGCGAGCACGCCCGGTTGGTGGGAACGAAAGAAGCGTGCGTGGGCGGCGCCGCNNCGGNTGGTATGGTGCGTTGGTTGGAAGGGAGAGAGCGAGGGTTGTACGGACGCCGTGATGTTAAGGAACGTAG | |||||||||
gi|161478841|gb|EX579949.1|EX579949 HDP30F14T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP30F14, mRNA sequence CTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): ACCTAAAGGGGTGCAGTATTACTGTATCAAGTCTGCGTATCGTGAATCATCTTCCGCTATACATCAAGAGGCCAATCAATAAAACTGAACCACAAGTCCATGCAAAGCACGACCCGACCCCGAGGTCTAGAAAGCAGAAACTGAAGTTCGTCAGGCAGGATGTATCTGTCTGTGCTGCTCTCTTCTGTAAGTATACTGCTGCTCCTAGCTGCAGCTATCTCAAGCCTGAAGAAACCCTGTATCCTTTTTTTTCGAGGATCAGAAACCCTGACCTAGGTTGCCTCATTGTCCCAGTAGTTCCTCAGCTGCGACATATGGAGGAGCAGCCCGTCCCGGCCTAGTCCTGTGGTGCTGCTCGTCATGATCCATGGAGGAGGCCTTGGATAGAGAGAACCGATGTTTTCCAGGAACTCTTTGATGTTCTCATC | |||||||||
gi|217061961|gb|GH228608.1|GH228608 HVSMEn0021E17f2 Hordeum vulgare rachis cDNA library HVSMEn (HVcDNA0015)2 Hordeum vulgare sub CTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): TTCAAAGTTACACACACAAAAGCTCCTTGGTTAAAGCCAACAACTGCTGCAGGTGTTGATGGGATGCATTTATCTAGTCAGCAGATGTCGGACAATGTTATGCCGCATGGTGCACATCATGGTTTCGATGGGTTCATGGCATTCAAGGGAACTTCTACAAAGTTCCCTAATCAAGGTGTCCAAGCTTCCGCTGTCGCCCCCAACTCCAGTGGCGCCCCGGATCTTCAGCATGCTCTCTCTCTTCTGTCAAGCAACCCAGTGGGTGCTGCCAACCTCCAGCCAACTTCCCAGATGCACTCTGGGGTGGCTGCCATTGCCGGCACCCCCAACCCCGCGATGCACGTGCTGGGATCATCGGCAGGGCTCTGGCTAGACGGCGGGCCACCCCTAGATGATCACCCGCGGTTCCAGGTCTTCGAGCGCTTGGGGGACCACGACAGCGAGCTCCAGCTCCCAAAGCCTTCCTACGACCACGCCTCGCACTTCGACCGGATGCACTGATGACGACGGCGCTCCGATCCGGTCACCCCGCTCGGTGCGTGATTTTATCACGCGATCGACGCCGTTTGTTCGGTCTGAAACCCGGGATCCTGCATTTTCTTTGCTTGGTGCCGTTGCCTGCCTA | |||||||||
gi|161469241|gb|EX576980.1|EX576980 HDP06E24w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP06E24, mRNA sequence CTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GGGGGAAGAGCTCGGCTGAGGCGAACGGCGGCGACGGGTGCCGCCACGCCGACCAGGACGGCCGTAGCCACCCTGGGAACCCGCCGCTGAACCATTTCCAGATCAGATAAACCTACCTAAGCATGCTCCCTCTCTTCTGTCATGCAGCCATGCTACTAGCTACAAATATCTACATATGTATCCACCCACCTACGTAGGTACGTACCTACCTACCCATGTCTCCACTATCCAGTCCCAGTGCACTAAGTGGCAGTATATACTGTCTCCTGTACTGCTATATGCTTGCGTCTGTCCGCCAAAAACCTAAGCTAAGCTAATTGTGACCCGGGAACTAGTCAGGTGTTAGAGTGATTGTCTGTGTGATGTGTAATTGTATGGCCAGTGCAGCCAAGACTTCTACAGGCTGTGTAATATTGCTGCTCTGCTGGGATAATTTGTGGCAATAT | |||||||||
gi|21156840|gb|BJ478354.1|BJ478354 BJ478354 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): TTCGGCACGAGGCGTCCTTCTCGGCTCCAAGGCCGGAGCCAAGCTGGTCCGGGATCATCAAATCCGAGGACAGCAATCCATTCTACAGCACGCACCAGGTTAACTTCGGCGGCGCCACGTCGTCATACTCCAAAGAAGGCCGGCGCTTCCCCTTCCTCCACGAAGGAGACCAGATGAGCTTCAGCACCGGCGCGCCGGCACTCGAGATCCCCGTGTGCCAGCCTCTCCTCAAGGCCGTCGCCCCGCTGCCGCCGCCGCCCGAGAGCAGCAGCAGCAACAAGATGTTCTCCGATGGACAGTTGACGCACGTGCTCGACTCCGACTGTGCTCTCTCTCTTCTGTCATCCCCGGCCAACTCCTCCAGCGTCGACGTCAGCCGGATGGTCCGTNCAAGCGAGCACGTCCCCTCTGTCCCCAG | |||||||||
gi|18206768|gb|AV910992.1|AV910992 AV910992 K. Sato unpublished cDNA library, cv. Akashinriki vegetative stage leaves Hordeum vu CTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): AAAGCCAACAACTGCTGCAGGTGTTGATGGGATGCATTTATCTAGTCAGCAGATGTCGGACAATGTTATGCCGCATGGTGCACATCATGGTTTCGATGGGTTCATGGCATTCAAGGGAACTTCTACAAAGTTCCCTAATCAAGGTGTCCAAGCTTCCGCTGTCGCCCCCAACTCTAGTGGCGCCCCGGATCTTCAGCATGCTCTCTCTCTTCTGTCAAGCAACCCAGTGGGTGCTGCCAACCTCCAGCCAACTTCCCAGATGCACTCTGGGGTGGCTGCCATTGCCGGCACCCCCAACCCCGCGATGCACGTGCTGGGATCATCGGCAGGGCTCTGGCTAGACGGCGGGCCACCCCTAGATGATCACCCGCGGTTCCAGGTCTTCGAGCGCTTGGGGGACCACGACAGCGAGCTCCAGCTCCCAAAGCCTTCCTACGACCACGCCTCGCACTTCGACCGGATGCACTGATGACGACGGCGCTCCGATCCGGTCACCCCGCTCGGTGCGTGATTTTATCACGCGATCGACGCCGTTTGTTCGGTCTGAAACCCGGGATCCTGCATTTTCTTTGCTTGGTGCCGTTGCCTGCCTAGAGGCTTATGGTTTGGCAATGCCTAGAATAAAGGCGCACACGAACAGACTTAGGATCAAATGACCCGGTTGTGTTGCCA | |||||||||
gi|24329126|gb|CA032492.1|CA032492 HX13D15r HX Hordeum vulgare subsp. vulgare cDNA clone HX13D15 5-PRIME, mRNA sequence CTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CGGGCTGAGGGCTCCTGCACTCAAGGCGCCGCTCGTCGTCGTCGCCGGCATCGAGCAGCGCTTCTGCCAGCAGTGCAGCAGGTTCCACCAGCTACCTGAATTTGACCAAGGAAAACGAAGCTGCCGCCGACGCCTCGCGGGTACAATGAGCGCCGGAGGAAGCCGCCGCCCGGACCTATGTCGACACGCTATGGCCGGCTTGCTGCGTCCTTCAACGAAGATCCAGGCAGGTTCAGAAGCTTTCTGCTGGATTTCTCGTACCCGAGGGCCCCGGCCGGCGTGAGGGACCCGTGGCCGGCCGTTCAGCCCGGCGACCACCGCATGCCTGGCACCACCCACTGGCAGGGCCAGGGCAGCCATCATGAACAACACCACGCTCATCGCAGTGCAGTTGCGGGATACGGCGACCACCACGCGTACAACGGCCAGGGCAGCAGCTCGGGGGGAGGCGGGGCGCCGATGATCCCGGCGGGCTTCGAGCTCCCCTGGACAAGATGGCGGGCGTCGCCGCCGACTCCAGCTGTGCTCTCTCTCTTCTGTCAACTCAGCCATGGGATAGTAGTGCCCACAGCTCCAGCCACATCCGGTCCCCGGCAATGTCGACGGCCAGCGCCTTCCAGGGCAGCCCCGGTGGCGCCCTCCGTCAT | |||||||||
gi|161458477|gb|EX590403.1|EX590403 HDP12I21w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP12I21, mRNA sequence CTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GCCAGAGGCGACTGTCTGATCACAATGCTCGGCGCCGGAAGCCACAGCCGGATGCATTCTCCTTTGCACCGGCAAGGCTACCGTCGTCATTGATGTTTGATGATAGACGACAAATAAGTTTTGTCTGGGATAAAGATCCACTTAGCCATGGAAGGCCTTTCCCATGTTCTCCATGGGACAGCCCATCTGACTTCAAGCCCCCACAAGTGAAGGAAATAAGAGAAGTGTCAATCAATGGACAAGTTCATTTTGATAAATCTCATCTACCCAATGCTGTTCCAGCACTGAGTCATGACATAGCTGAGCTGCTACCAATGAAAGGTCCGGGCGCATCTGCAACCGCTTCGAAATTAGGTGGAGCACCGGATCTTCAGCGTGCTCTCCCTCTTCTGTCAGCTAGTTCTTGTGGATTACCTGATCCAGTACAGCAAGCATCTTGTCTCGTCCAATTCACTGGTGCCAGCCAAAACAGCCGGGGTCTGCCTTCACCACATGGAGGGAGCCCTCCGTCGGCATCCTGTGCCGAGGGACAGCCCATGGCTCCATCACCTCAGTTCGTCCGTTTCACGATGGATGGCGCCAGCAGTGGCTATGAATCCACTTTCTTCGGCGTAAACCGGATGAATTGATACGCGAGACGTATGCGCCACTGTATGATTTGGATCTACGGCATGGAAGAGCTTATGCAAGAACTGCTCCC | |||||||||
gi|217050860|gb|GH218557.1|GH218557 HVSMEg0012M18f2 Hordeum vulgare pre-anthesis spike (white to yellow anther) cDNA library HVS CTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): ACCGCAGCCGGATCCGATGAATTCTGCAAGTTTTATGACGAGTCAACAAGGAACAAGGTTTCCATCATTTCCAACTCCAAGACCGGAGCAAAACTGGCCAGGGATCATTAAAACTGAGGAGAACCCCTATTACACACATCAGCTCCCTCTAGGCATCAGTAACAGGCATCATTTTGGTGGCTCTACATCTACTTTCGCGAAAGAAGGACGGAGATTTCCTTTCCTACAGGAGGGCGAAATAAACTTTGCCACCGGTGTGGCACTTGAGCCTGCAGTGTGCCAGCCGCTGCTCAAGACGGTAGCTCCTCCCGAGAGCAGCAGCAGCAGCAGCAAGATGTTCTCCGATGGTCTGACTCCGGTGCTCGACTCGGACTGTGCTCTCTCTCTTCTGTCAGCTCCGGCAAATTCCTCCGGTATCGATGTTGGCCAGATGGTCCAACAGACTGAACACATCCCCATTGCCCAACCTCTGTTCTCCAACCTGCAGCAATTCAGCAGCTCGTCCTGGTTCTCGCGCACCCAGGCTTCCACCGGCACCGTCTCA | |||||||||
gi|161463568|gb|EX597081.1|EX597081 HDP15L02w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP15L02, mRNA sequence CTGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GAAGGAAATAAGAGAAGTGTCAATCAATGGACAAGTTCATTTTGATAAATCTCATCTACCCAATGCTGTTCCAGCACTGAGTCATGACATAGCTGAGCTGCTACCAATGAAAGGTCCGGACGCATCTGCAACCGCTTCGAAATTAGGTGGAGCACCGGATCTTCAGCGTGCTCTCTCTCTTCTGTCAGCTAGTTCTTGTGGATTACCTGATCCAGTACAGCAAGCATCTTGTCTCGTCCAATTCACTGGTGCCAGCCAAAACAGCCGGGGTCTGCCTTCACCACATGGAGGGAGCCCTCCGTCGGCATCCTGTGCCGAGGGACAGCCCATGGCTCCATCACCTCAGTTCGTCCGTTTCACGATGGATGGCGCCAGCAGTGGCTATGAATCCACTTTCTTCGGCGTAAGCCGGATGAATTGATACGCGAGACGTATGCGCCACTGTGTGATTTGGATCTACGGCATGTAAGAGCTTATGCAAGAACTGCTCCCGTCAACTACTAGAGTGGAAAATCTCACTGTTCATGTTACCTACCTACACACTCATTGGTTACCTTGTTGTTTTCCGATGTACAACCCTGCCGCCGATTGTTGGCTCG | |||||||||