| mature miRNA: GATCTTTGGTCCCGGTTCGGG species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|9419483|gb|BE421640.1|BE421640 HWM012cC.03r ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM012cC.0 GATCTTTGGTCCCGGTTCGGG EST sequence (targeted fragment marked with yellow): TGGGGNCCGCGGGTAATGAGCGGCATTACCCTACTAACGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCATCGGCTGCATCTCGAAAAGAATGCATGCCTTCTCTGTAAGTGGTTGTGCGTCAATCACCGTACATCCATGGATGGCTCATCTGTGTTATACGACAGTATATCAAATACAATCACGATCCTAAAAATTAGTACCGCACGGTCTAAACGAGGAAATATAGTTGCTAACCTTTTAGAATAAGTAGAAATAAAGAGGAAGAGGTTTAAGCGTGGCTCAGGCATCTCATATCGTAGTTGTGTTCGGTGAACTGAAGCGGCATCGCTCTAACACACATTTCAACAAACACCTCTAGTGCATCAAAAAAAGTGGAGAGCAAGCACCCACCCACAATCCTCCATCCAAGAAAAATGCAAGGAAGAGGGGAGAGGGGGGCTGTGCTATATATAGGCAGAGGACTTTAGTCCCGGTTTGAGACACGAACTGGGACTAAAGGTGGCGCACATGCGGGCTGCCCACCGCGTAGCCCTTTAGTCCCGGTTTGGGACACGAACCGGGACTAAAGGCTCCTTACGGGCCGGGACTAAAGCCTCGAGGGGGGGCCCGGTACCCAATTCGCCCTATAGTGAGTCGTATTACGCGCGCTCACTGGCCGTCGTTNTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTGNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCANNNNNCNNNCNNATNGNNNNNNNNGNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNAANNNNNNNNNNNNNNNNAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCG | |||||||||
gi|24237153|gb|BU986207.1|BU986207 HF11A03r HF Hordeum vulgare subsp. vulgare cDNA clone HF11A03 5-PRIME, mRNA sequence GATCTTTGGTCCCGGTTCGGG EST sequence (targeted fragment marked with yellow): GGGTCATGGCTCCACCCGGGACTAAAGGGTGTCTTTAGTCCCGGTTCGAGCCCCGAACCGGGACCAAAGATCCTACTATATAAGCGGGAGTTGGAAATTTCCAACCCAAATCGCCATTTCTCTTCTTCCTCGGACTCTCTCCTGCCTGGCGCAGCACAAACTCGCGCAAGGCCGCCAGGCTGCCCGCCGTCCTCCTCGCCGCTGCTTGCCGTCCTCCTCGTCGTCGCCGTCGTCCTCCTCGCTGCCGCCGTCCTCCTTGCCGCCGCCATCCTCCTCGCCGCCGCCTGCCGTCGTCGACGCCCTCCCTTCCCACTCCAGCCGGTAAGCCCCCCGCCCACTCCTCGCCAACGCTCCTGCCGGTAG | |||||||||
gi|166067629|gb|FD520628.1|FD520628 RUS126G08w HA Hordeum vulgare subsp. vulgare cDNA clone HA17J03, mRNA sequence GATCTTTGGTCCCGGTTCGGG EST sequence (targeted fragment marked with yellow): GGGCATCAACCAACACTATATACACACGCATCATCATCGTCGTCGTCGGATCCGGGCCGGGCACTCTGGGTCCGGCGCCATGTACAAACTTACAGCGGCATCATCTACCATCATCATCTGCTTGCAAACAAAAACCCGGCAAAACCACAATACATAGGGGGATAGGGGGGTGGATGGTATCTCTCACGCTAAAACGGGGTAGGGGCAGAGGGAGGGAGGGAACGGGTCCCCTGGCTCCATAAGACTAGCTATAATACTGTTCTTCATGACACGAGCTGGGATCAGAGATCGGCGAGGCGAGCTTGGAGCTGTGCCCGTTGAGCAGCAGGAGAACAAGGCGCATCAGAGCGCGGCAAGCTTGCCCTGCTGAACCGAATGTCTAGCTACTGGATGGATCGTCTATCTACCTGGGGTCTTCTAACAATACAAGAATCTCTTCGTCGTCGATGGTCCCGCTGTCAATGGCGTACTGTAATGATGTTCTACCCTCGCGGTCGGTGGCCTGCGAGTCAGCACCCCTGGAGAGGAGTAGCTTGGCATGCACGCGTCTTCCTTTCAAAATGCTGTGATGAAGCGGTGTTCGGCCTCTAGAATCTGTGCAATTCACACTGGCTCCATACTGCAAGAGTAGTTCAACCATGCCAATATCCGCAACACGGCACGC | |||||||||
gi|16313841|gb|BF616144.3|BF616144 HVSMEc0003G11f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstresse GATCTTTGGTCCCGGTTCGGG EST sequence (targeted fragment marked with yellow): CAGCGACGACTACCGCTACGGCTACGGCCACGGCCGCCGCCTTCCTCTCCGCGGCTCCTGCCTTCTCGTCCTCCACCCACCGCCGGCGTAGCCGTCTCCCTGCTATCTCCGCCTCCCTCCCGTCCGAAGAACCGCTGCTCATACGTGCGGCGAGGGGCGAGGACGGGCTGCCCAGGCCGCCGGCGTGGATGATGCGGCAGGCTGGGCGGTACATGGCGTCGTACCAGGCGCTGTCCAAGCGCCACCCTTCGTTCCGGGAGCGGTCGGAGACCACCGACCGTATCGTCGAAATCACGCTACAGCCGTGGCACGCCTTCGCACCCGACGGCGTCATCCTATTGTCGGACATACTCACGCCGGTGCCGGCCATGGGGGTGCCGGTGATATTCAGGATCCAAGGGGCCGGGATCCAGTAGCCTGGCCGACGGAGGAACAGGACATGGAGCTGGGACCAAAGATCTGGATAGGTCCGATTGCGTGGAGGCGGTAGAGAATCTGGACCGCCGGAATTGATGGGAACGCTGTTTGGATGACATATGGTGGGGGCCAGAGGACAGATGGAATTCG | |||||||||
gi|166072613|gb|FD522424.1|FD522424 RUS56A04w HF Hordeum vulgare subsp. vulgare cDNA clone HF02P09, mRNA sequence GATCTTTGGTCCCGGTTCGGG EST sequence (targeted fragment marked with yellow): AAACCATTCAAATTTAAAAAATAATTGCACAAACAGAAACTAGACAAAATTTTGAATCTAATGCAAAAAAGAATCACTCAAAAAAATTAAATATCCTAAAAGATATAAGCAATTTAAAACAGAAACTACAAACAGAAATAAAATTTAAAAACAGGAAAAAATAAAAATACAAAACCCCTTTAGTCCCGGTTCGTGGTCCCGGTTCAAAACACGAACCAGGACTAAAGCCTCCAAACCATTTAGTTCCGGTTCCAGACACGAACCGGGACTAAAGGTCCCTCTTGAACCGGGACTAATGACCGACCGGCACCCTTGCCGTTCGAACCGGGACTAATGCTAACATTAGTCTCGGTTCGTAATGAAACCGAAACTAATGTGTAAATTGAGCTGGGACGGAAGCCCCTTTTTCTACTAGTGGCACTTCTACAAACACGTGGCTGTGGACCACATGTCATCCTCACACTAGAAATCAGGAAACAAGTACTAACTGCAGACACCGGACATTTGTCGTACAAAATACTTCCTTTGTACCTGAATAATTGCAGTTG | |||||||||
gi|21189799|gb|AJ473843.1|AJ473843 AJ473843 S00008 Hordeum vulgare cDNA clone S0000800103H09F1, mRNA sequence GATCTTTGGTCCCGGTTCGGG EST sequence (targeted fragment marked with yellow): GTAAGGAGCCTTTAGTCCCGGTTCGTGTCCCAAACCGGGACTAAAGGGCTACGCGGTGGGCAGCCCGCATGTGCGCCACCTTTAGTCCCCGCTCGTGTCCCAAATCGGGACTAAAGGTCTGACACGTGGCCTGCCGTAGTGGTGGCAACCGTTGGTATCCCTCTTTAGTCCCGGTTCGTGTCCCAAACCGGGACTAAAGGCCTAACACATGGCCTGCCGTAGTGGTGGCAACCGTTGGTATCCCTCTTTAGTCCCGGTTGGTGGCTCAACCCGGGACTAAAGGCCCAAACGGTTTGCATCCCGCTTCACAAAACCACAACCGAAGCAGAGTCTCTGTCGCGCCGCCCTTTCTCTGTTCTT | |||||||||
gi|60287520|gb|DN185759.1|DN185759 HO31H01w HO Hordeum vulgare cDNA clone HO31H01 3-PRIME, mRNA sequence GATCTTTGGTCCCGGTTCGGG EST sequence (targeted fragment marked with yellow): AACGTTCTAACTCCTCCTTAAATACATGAATTCCTCTATACTCCAGATAATGCAACGATCAATGATACATGACAAGTAAACTATCAAAATACAGTAGGAGAGGAGTGAGGTGCTTAGCCGCCCGAATTGTGACCAAAGAATGCGAGGGGTGCATTCTTGATGGAACCTCAAACTCGGCGGCTCGCCTAGGATCGGGGCTTCGGCGTCTCGCCTAGACTCGGAGCTCAGCGGCTCGCTTGCCGTAAGACTTGGCGTTACGCTCGGACTTGGAATTCAGGATCCTCACCTTTACCAAAAACTCTCAACCGTGCCTTCCTCTCTTGAAGGTATAAACGTATTTCATCTCTGGCAGCCTTTCCAGTTGCAACATTTATGCGTGCATTTTGCACTTTAGGATTGTACAATTTTACGAGGTCTGTTGCAAAAGCGGCTTCTTCAGATGAAGTCAGTTCTCGCACATAGGGGCTTGGTAGTTCTTCGTGTGTTACTCCTAGAGCTAGGAACACGGGGGCGTAACCGGT | |||||||||
gi|94349949|gb|BY861994.1|BY861994 BY861994 Etiolated seedling shoot Hordeum vulgare subsp. vulgare cDNA clone baet40a02 3', mRN GATCTTTGGTCCCGGTTCGGG EST sequence (targeted fragment marked with yellow): GATGGATAGGAGACCACTAGGCATCCTCTTACCTTCTCCTTTCCTCCCTTGTTTCTTCTTTTCCGGTGACTCTCGCCGGAGTTGTTTTCCTTCACTAGTGGGGACGGGGCCTTTAGCCCCGGCCTGTAAGGGGCTTTAGTCCCGGTTCACCAACCGGGACTAAAGGGGCGGGACTAAAGGCCTAACCTTTAGTCCCGGCCCTCTTACAATCCGAGACTAAAGGTGCTTCACGTCGGCGCCTCGTAGCGCCCCAGAGGCAGGCCCTTTAGTCTCGGTTCGTTACACGGACCGGGACAAAAGATTTTCAGATTTTGCTGGTTTTTGGGTTTTTTTTTAATGAAATTATTTTTGGGTTTT | |||||||||