| mature miRNA: GCATAGCATCATGAGCAATCA species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161415341|gb|EX577260.1|EX577260 HDP05O17T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP05O17, mRNA sequence GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): CCCAATTCAAGTATACCCAAGCTAAACTAGTTGCTATGATGCTATGCTTTCTAAGCTGAGCTAATATTTCTTCCCAGGGCTAGTTTGTGCTACCCTATCTACACCGGACTAGCTTGATCATCACCATCATCTTCTGACAGGAAGGACTGGACTAATATTTAGACTGAAATCTGTATCTGTGCACCCTACATGTGATTTCTGTATTACTAGCCCTACTAGTAGAGCTTGATGAGGCCGAAGTTCTGGAACGGACGGTAGAACTTGAAGAGGTTCCCGAAAAGGAATGCCGTCGAGCCGGCGGCGACCTCGGAGGTGGAACCGCCGTCATCGGCCAACGGGTTGTTCTTTACCCGCAGTGTAGCTTCGCCG | |||||||||
gi|161481341|gb|EX590600.1|EX590600 HDP12E06w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP12E06, mRNA sequence GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GGGGGATGTGCCTGGTGCCGGTGTCGTGCATTACCTCGCGTCTGGGCGCCGACAACGCCTCTGATTTCTGGCAGCCGGCGCCGCCGCTCGGCGGCATCATCCTGCGCTAGGATCATCAAATTGTTTACACACCGCGCACGCGCGTAAATATATACCTTAGCGTTCACACATTAATTTTGTTATACATATATATCTGTTGAGATATTCAGCAACACATATCATCAGGAGCAGTCATTCTATGTCCAAGAGTGATTGCTCATGATGCTATGCAATGCATGTATGTATGCACACAATATACACACAAGCCGCTGCTCTCCACCTGTTGTGTGTGCATGTACTATCTTTTTCTACGGAATGTGTACCTGTTTTGCAACGGAAGGTTGACCTATTTTGAGACC | |||||||||
gi|158853751|gb|ES216507.1|ES216507 018 Fusarium induced barley EST SSH library Hordeum vulgare cDNA, mRNA sequence GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): ACCGTGATCCAAAGACGGGATTACCTTATGCAACAATGGCAGCGTTTAAGATCATCCGAGAGAGGTTCCTGAAAGAGGAGCCGGATAAGAAGAGGCCCAACATGTCAAATATGGGAGAACTCTTTGAATCAGTAGCTGGCGAACATTCTACGCCTAAGAAGAAAAGAATCGAGGGAAGATCACCAATATCAGTAGACCTAAGGCACGGTGGACGCTTCAGACGAATACCTGCTCTTGATGTGATGGACGAGGACTGATGTTCTCTGACAGTGTGGTTGCATAGGTTGCCATGTTACCGAGGACAGATCTGATGGCATGGTTGCATATGATGCCATGTTAGCATGACTTGACAGAGATCTCTGGCGGTGTGGTTGCATATGATTAGCATGGGGACTGGCCGGAGATCTCCCAACAGCGTGGTTGCTTAAGATGCCTTGTTAGCATTAGGAGCAGT | |||||||||
gi|16311032|gb|BI959777.1|BI959777 HVSMEn0021G17f Hordeum vulgare rachis EST library HVcDNA0015 (normal) Hordeum vulgare subsp. GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): ATGTGCGGGGGTGATGCTGACCGGAAGCCTTCTTTCCGAAACAAGAAAATGTATTATACGCGGCAAAGGACCCAAAGGAGTACATTTAAGCGAAGGAAGATGTTGGATCGTCATTCAACTCTAATGCCTGAAGAATTTGCAAAATCAAATGCAAAGAGAACGGAGAGGTTAATGCAAGAGAACCACATGCTGCTTCTTTGGAAGCAAACAAGGGCAGCAACTCAACGCCATTCCATGGATCCTGTAAATCGAACGATTGCCATGTGAAACTTAAGATCAAATCTTTCAAGGTGCCTGAACTTCTAATTGAGATCCCAGAAACTGCTTCTGTTGGTTCACTGAAGAAAACTGTTCTGGAGGCAGTAAATGCCATGCTTGGAGGTGGTCTGCGTGTGGGTGTTCTTCACCATGGAAAGAAAATCAGGGATGATAGCAAAACCCTAATACAAGCTGGGATTGGTCATGATGATATGCTGGACAACATAGGCTTTTCACTTGAACCCAACTGTACACGGCATTCATAACAAGTTGCAGCTCCTGAAGATATTGAATTCCTAGAAACTGGTGAAACTACTGAACCCCTAGCCAGGATCCCACCTGCGGACTCGTCTTCCAACCACGGGGAAAGCCGAGGCCTTACAGAAGCTTGCTTTGACCCCCTTGACG | |||||||||
gi|217048471|gb|GH215965.1|GH215965 HVSMEf0016O09f2 Hordeum vulgare seedling root (etiolated unstressed) cDNA library HVSMEf (HV GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): ATACCAACCTGCTACACGATGGTCTTCCGCAAGCGATGATCGATGTACGAATTCCCCACTGTTTTGATGGTCATGTTCCTTTGCTTTGTGTGGTTGGAATGCTAATTATGGAGGTTTGGAATTGGGAATTGGCGAGCTTGGTTCTCATGTCATTCTTCTCCTATCTACATTCGTCTCGATGCATCTACCTATATCATGATGTCATGAGCCTGCTGTCGACATACATCTGAGGTGACTGATGATGATGTTATGCATGACTTTTAAGCGCTACATGTGTGGCTCCCAAATAGGATCATATCTCTCTGCGAGAATCTTCAAGTATATGGCCT | |||||||||
gi|217046850|gb|GH211916.1|GH211916 HVSMEb0003N07r2 Hordeum vulgare seedling shoot (dehydration stress) cDNA library HVSMEb (HVc GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTAACTGAAACTGCGAGGGCTTTTTTGCAAAATGACCTATGTACAAGATGAGTATTTACAGAGATTCTAGTACAACCCAATTCAAGTATACCCAAGCTAAACTAGTTGCTATGATGCTATGCTTTCTAAGCTGAGCTAATATTTCTTCCCAAAGCTAGTTTGTGCTACCCTATCTACACCGGACTAGCTTGATCATCACCATCATCTTCTGACAGGAAGGACTGGACTAATATTTACACTGAAATCTGTATCTGTGCACCCTACATGTGATTTCTGTATTACTAGTCCTACTAGTAGAGCTTGATGAGGCCGAAGTTCTGGAACGGACGGTAAAACTTGAAGAGGTTCCCGAAAAGGAATGCCGTCGAGCCGGCGGCGACCTCGGAGGTGGAACCGCCGTCATCGGCCAACGGGTTGTTCTTTACCCGCAGTGTAACTTCGCCGATCTGCGCGCGGATGGCCTCGATCGTCTTGGCTTCCACTGGGTGGCCCTGCGGGTC | |||||||||
gi|16299825|gb|BI954372.1|BI954372 HVSMEm0017H17f Hordeum vulgare green seedling EST library HVcDNA0014 (Blumeria infected) Hord GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): AAAACAATACAAAGAGGAATTTTGTGTAGGCAACAACCAACAAATTCAATAACTGACTGTTTTATTTCACAATATCATAAGCCACCAAAGCTATATATGAGTGCTAGGCTCGGACAATAAGCCGCCGCGGCGAGGCGACGGTTCTACTTCAGCAATAGCAACCTCCTCCAGGATGGTCTTCGGCAAGCGATGATCGATGTGACTGATGATGATGTTATGCATGACTTTTAAGCGCTACATGTGTGGCTCCCAAATTGGATCATATCTTTCGGCGAGAATCTTCAAGTATATGGCCTTCGCTTTGTGTGGTCCTGTCTGCAATTTAGAGTTCCTTGACTTCGAGGAGGATCATAATATCTTCAAAGGCGCCAACAAGGATAATAAGCCACGACGAGGGTTGGACGAAGTTTGCAGTACTATAAGATATTGGTCTTCAACCAAATGCTTTAACTGCAGTTCTAGCCACAAAGGCATCTACAAAATATTCATGTACACCGTAATTATGCAACAATAAGATCACAACTCCATCACTCTCATCAATTTAGACTAAGTTCTGTAATTAGATTGTTGATTTTTTTTTTATGTTTTGGTAGTAGGTTATGTTCTTCAAGTACTTCTAATTCGAAAAAACTCTANCCTCTGCGATAGCGGGCCCCTGGCCGCCAGTTTGTGGAATGAAGATGTCCCATTGATTTTC | |||||||||
gi|30056852|gb|CB862293.1|CB862293 HH02L13w HH Hordeum vulgare cDNA clone HH02L13 5-PRIME, mRNA sequence GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): CACGCGTCCGGACGAATACCTGCTCTTGATGTGATGGACGAGGACTGATGTTCTCTGACAGTGTGGTTGATAGGTTGCCATGTTACCGAGGACAGATCTGATGGCATGGTTGCATATGATGCCATGTTAGCATGACTTACAGAGATCTCTGGCGGTGTGGTTGCATATGATTAGCATGGGGACTGGCCGGAGATCTCCCAACAGCGTGTTGCTTAAGATGCCTTGTTAGCATTAGGAGCAGTACAGTGACACACTATGTTCTTGATGCCGCTTGTGAGATGGTCGCCAATGGCATGTTGTAAACGAACTGCTATCAGTTCACGGCTTCTTGTGTTAGGTGTGCTTAACCGTAGTCGTAGGGACTGTTCAACATAGCCTCAGCATTGCATCCTGACATCT | |||||||||
gi|60290233|gb|DN188472.1|DN188472 HO22M23w HO Hordeum vulgare cDNA clone HO22M23 3-PRIME, mRNA sequence GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GAACAATATAAAGCTTCCTGGGTCTCAAAATAGGTCAACCTTCCGTTGCAAAACAGATACACATTCCGTAGAAAAAGATAGTACATGCACACACAACAGGTGGAGAGCAGCAGCTTGTGTGTATATTGTGTGCATACATACATGCATTGCATAGCATCATGAGCAATCACTCTTGGACATAGAATGACTGCTCCTGATGATATGTGTTGCTGAATATCTCAACAGATATATATGTATAACAAAATTAATGTGTGAACGCTAAGGTATATATTTACGCGCGTGCGCGGTGTGTAAACAATTTGATGATCCTAGCGCAGGATGATGCCGCCGAGCGGCGGCGCCGGCTGCCAGAAATCAGAGGCGTTGTCGGCGCCCAGACGCGAGGTAATGCACGACACCGGCACCAGGCACATCCCTCTGCTCCTCAGGTCCGACTTCTTGCTCTCGCCATCTTGTGCATCCTGCTCGGTATGGGCTGCTTCGGCTGAGGCATTTATGTGATCACCATGGTTCAGCTGAGCTTGGTGACGTACGGAGGCTCCAGTGCCATGTCCCAAATACGGGTAGCTGAGAGCCTCTATTTGACTC | |||||||||
gi|161477609|gb|EX594672.1|EX594672 HDP32B13w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP32B13, mRNA sequence GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GAGGGAAGATCACCAATATCAGTAGACCTAAGGCACGGTGGACGCTTCAGACGAATACCTGCTCTTGATGTGATGGACGAGGACCGATGTTCTCTGACAGTGTGGTTGCATAGGTTGCCATGTTACTGAGGACAGATCTGATGGCATGGTTGCATATGATGCCATGTTAGCATGACTTGACAGAGATCTCTGGCGGTGTGGTTGCATATGATTAGCATGGGGACTGGCCGGAGATCTCCCAACAGCGTGGTTGCTTAAGATGCCTTGTTAGCATTAGGAACAGTACAGTGACATACTATGTTCTTGATGCCGCTTGTGGAGATGGTCGCCAATGGCATGTTGTAAACGAACTGCTATCAGTTCACGGCTTCTTGTGTTAGGTGTGCTTCAACCGTAGTCGTAGGGACTGTTCAACATAGCCTCAGCATTGCATCCTGACATCTAATCATGGTATTCGTTTCCGTGTCATTTTGAC | |||||||||
gi|217060350|gb|GH226558.1|GH226558 HVSMEm0017H17f2 Hordeum vulgare green seedling (Blumeria infected) cDNA library HVSMEm (HVcD GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): AAACAATACAAAGAGGAATTTTGTGTAGGCAACAACCAACAAATTCAATAACTGACTGTTTTATTTCACAATATCATAAGCCACCAAAGCTATATATGAGTGCTAGGCTCGGACAATAAGCCGCCGCGGCGAGGCGACGGTTCTACTTCAGCAATAGCAACCTCCTCCACGATGGTCTTCGGCAAGCGATGATCGATGTGACTGATGATGATGTTATGCATGACTTTTAAGCGCTACATGTGTGGCTCCCAAATTGGATCATATCTTTCGGCGAGAATCTTCAAGTATATGGCCTTCGCTTTGTGTGGTCCTGTCTGCAATTTAGAGTTCCTTGACTTCGAGGAGGATCATAATATCTTCAAAGGCGCCAACAAGGATAATAAGCCAGGACGAGGGTTGGACGAAGTTTGCAGTACTATAAGATATTGGTCTTCAACCAAATGCTTTAACTGCAGTTCTAGCCACAAAGGCATCTACAAAATATTCATGTACACCGTAATTATGCAACAATAAGATCACAACTCCATCACTCTCATCAATTTAGACTAAGTTCTGTAATTAGATTGTTGATTTTTTTTTT | |||||||||
gi|21181431|gb|AJ465475.1|AJ465475 AJ465475 S00007 Hordeum vulgare cDNA clone S0000700010C05F1, mRNA sequence GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): AGGCAGTTGTCCTTAATCTCCTCAACAGGCGAGCAGGGGCTGGCATGGACCTCTTGCTGCTCCTCTTTTAGTTTGCTGGGGAGAGAGCGACTATGCCAGCCCGACGTAGATGAAGTTGCTCCCTGTGCCAGGTTTGATTTTTTATGCTAATTTGTTAAGGGTGGTATTGAGTGTTCATGATGCCATGATTTTTTTATTCGCATTGTTGCCTGACTATAGTGATCCGATTGAGAACCCAGTGAATTTCAGCACCGTCAAGAGGAGGCTTGCCAGGGATGTGACAAATCCTATCCAATTTGGTCTTGTCCCATAGCTCAGACTTGGAAAATCTTTCATTTGAGTAGTTCGAGATCAGTACCT | |||||||||
gi|24302047|gb|CA024673.1|CA024673 HZ49P16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49P16 5-PRIME, mRNA sequence GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): AAACAATACAAAGAGGAATTTTGTGTAGGAAACAACCAACAAATTCAATAACTGACTGTTTGATTTCCCAATATCATGAGCCACCAAAGCTATATATGAGTGCTAGGCTCGGACAATAAGCCGCCGCGGCGAGGCAACGGTTCTACTTCAGCAATAGCAACCTCCTCCACGATGGTCTTCGGCAAGCGATGATCGATCTACCTATATCATGATGTCATGAGCCTGCTGTAGACATAGATCTGAGGTGACTGATGATGATGTTATGCATGACTTTTAAACGCTACATGTGTGGCTCCCAAATTGGATCATATCTTTCGGCAAGAATCTTCAAGTATACGGCCTTCGCTTTGTGTGGTCCTGTCTGCTATTTAGAGTTCCTTGACTTTGAGGAGGATCATAATATCTTCAAAGGCGCCAACAAGGAGAATAAGCCAGGACGAGGGTTGGACAAAGAACTTTCTTGTCATGCCGTGTTTTCCATTTGCATGCATTTGCATTTTCGAAAATATGAAGTTTGCAGTACTATAAGATATGAAGCTATGTATGTATGGATGCTATGGAACTATATGTATATATGGATGCTATGGAATTTTGGATGTATGGATGCTATGG | |||||||||
gi|217058371|gb|GH225828.1|GH225828 HVSMEm0006K03f2 Hordeum vulgare green seedling (Blumeria infected) cDNA library HVSMEm (HVcD GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): ATCTGGTCTCTTTATCCCAGTTATCCTTGCTGGAGCCACATACGGTCGAATAGTGGGTACGCTTTTGGGATCCATATCAAATCTTGACCCTGGACTTTTTGCACTTCTTGGTGCGGCCTCTTTTCTCGGTGGGACAATGAGAATGACGGTGTCAGTCTGCGTGATCCTTCTAGAACTCACCAATGATCTGCAAATGCTCCCTTTGGTCATGCTTGTTCTTCTAATATCGAAGACCATCGCGGACAGCTTTAACAAGGGGGTTTATGACCAGATAGTGGTAATGAAAGGTTTGCCGTACATGGAGGCTCATGCTGAACCGTACATGAGACATTTGGTTGCTGGTGATGTTGTGTCGGGCCCACTAATCACATTTTCAGGTATCGAGAAGGTAGCGGACATTGTTACTGCGTTGAGGATCACTGGCCACAATGGATTTCCAGTGGTTGATGAGCCACCTCTAACAGAAGTGCCTGAGTTGGTTGGGCTTGTGATCAGGTCTCATCTATTGG | |||||||||
gi|217058530|gb|GH225168.1|GH225168 HVSMEl0021F13r2 Hordeum vulgare spike (Fusarium infected) cDNA library HVSMEl (HVcDNA0012)2 GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTAACTGAAACTGCGAGGGCTTTTTTGCAAAATGACCTATGTACAAGATGAGTATTTACAGAGATTCTAGTACAACCCAATTCAAGTATACCCAAGCTAAACTAGTTGCTATGATGCTATGCTTTCTAAGCTGAGCTAATATTTCTTCCCAGAGCTAGTTTGTGCTACCCTATCTACACCGGACTAGCTTGATCATCACCATCATCTTCTGACAGGAAGGACTGGACTAATATTTACACTGAAATCTGTATCTGTGCACCCTACATGTGATTTCTGTATTACTAGTCCTACTAGTAGAGCTTGATGAGGCCGAAGTTCTGGAACGGACGGTAGAACTTGAAGAGGTTCCCGAAGAGGAATGCCGTCGAGCCGGCGGCGACCTCGGAGGTGGAACCGCCGTCATCGGCCAACGGGTTGTTCTTTACCCGCAGTGTAGCTTCGCCGATCTGCGCGCGGATGGCCTCGATCGTCTTGGCTTCCACTGGGTGGCCCTGCGGGTCCGACAGG | |||||||||
gi|16315910|gb|BF258869.3|BF258869 HVSMEf0016O09f Hordeum vulgare seedling root EST library HVcDNA0007 (Etiolated and unstressed GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): CGGACAATAAGCCGCCGCGGCGAGGCGACGGTTCTACTTCAGCAATAGCAACCTCCTGCGCGATGGTCTTCGGCAAGCGATGATCGATGTACGAATTCCCCACTGTTTTGATGGTCATGTTCCTTTGCTTTGTGTGGCTTGAATGCTAATTTTGGAGGTTGGGAATTGGGAATTGGCGAGCTTGGTTCTCATATCATTCTTCTCCTATCTACATTTGTCTCGATGCATCTACCTATATCATGATGTCATGAGCCTGCTGGAGACATAGATCTGAGGTGACTGATGATGATGTTATGCATGACTTTTAAGCGCTACATGTGTGGCTCCCAAATTGGATCATATCTTTCGGCGAGAATCTTCAAGGATATGGCCTTCGCTTTGGGTGGGCCTGTCTGGCATTTAGAGTTCCTTGCCTTCGAGGAGGAATCATATATCTTCAAAGGCGCCAACAAGGATAATAAGCCCAGACGAAGGGTGGACGAAGTTTGCAGTACCTATAAGATATTGGATGTTAAACCAAATGCTTTAACTTGAGGTTCTAGCCCACAAGGGCATCTACAAAATAATTCATGGTCACCCTAAATTATGCGACAACT | |||||||||
gi|59945723|gb|DN159829.1|DN159829 GPN003J09u GPN Hordeum vulgare cDNA clone GPN003J09 3-PRIME, mRNA sequence GCATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): AAATGCTCGAGCGGCCGCTAATGTACCGATACATGCCTAGGCTTATTGGTGAAAAAAAATCAGCTAGCAAGTGCACGATACAGCCAGACTAAAAAAAAGTTCACTCTATAAATTGCTAGATTTATACAACAAGGCCATAAATTTTGCAAGGACTGAAGGACCACGACCAGCTACAAAAGAAATAGACCGACCATGCATCTTCCTTCATTAAAAGCCTCTTTGCAGAAATAATGCAGATACAGAAGGCTTAATCGCTTTCACCCCCATGATATGATTACACTACACTCGCATAGCATAGCATCAAGAGCAATCAGCCTTAGTAGAATGACTGCTCATGATGGTATGTACTCCTGCACCACCCCATGCACAACACGTATACTTGCTGCAAGACCAGTCTTCTCTTTTACCGGAGGATCCCGCCAAGCGGTGCCGGGGCCCAGTAGTCAGCGGCGTTGTCCAGCGGCCGCTGGACGTTCTACAAGCTTTCCATTCTACATGATCCAACCTTCAAAGGAAGTTGTCAAAAATGAAAAATTGTACCACCACTGCCTGCTGATCACTTCTAATACCTGTAACTTGGACCCGGCAAGAGTGAAAACTGAACTAAACAAGTTCTGGGAGCTGACTGATGACTGGGATATAAGGAGAGAAGGTAGACAGAATTTCGTAGCATCCTTCAACTCAGAGGATGACCTGCTAA | |||||||||